Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0008217

Physical Location & Seq

Genomic Coordinates Forward (+)

31149029 .. 31153265

Gene Structure 4237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1219100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGGCTGCTATTGTTCAAAGGAAGCTAAAACGCCTGGCTATGAGGACCCTGCGGTTCTTGCTGCTGCGACACCTTTTACTGTGAACGAAGTAGAAGCCTTGTATGAGCTTTTTAAGAAATTGAGCAGTTCGATATTTGATGATGGACTGATCCACAAGGAAGAATTTCAGCTCGCGCTCTTCAGGAACAGAAATCGGAGGAATCTTTTTGCAGACAGGATTTTTGACTTATTTGATATCAAGCGCAATGGGGTTATCGAGTTTGGAGAATTTGTTCGATCATTAGGTGTCTTTCCACCCCAAAGACACCTTCGAAGACAAATTCATGAAGTACGACATTTATCCTCTTCTCTGTATATCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

122

Amino Acids

14.07

Weight (kDa)

7.82

Isoelectric Point (pI)

57.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24270 AT5G24270 AT5G24270 AT5G24270 AT5G24270
fragaria_vesca	FvH4_7g31620
malus_domestica	MD01G1219100.v1.1 MD07G1288800.v1.1
prunus_persica	Prupe.2G310300_v2.0.a1 Prupe.2G310300_v2.0.a1 Prupe.2G310300_v2.0.a1
pyrus_communis	pycom01g22890 pycom07g26140
rosa_chinensis	RchiOBHm_Chr1g0380691
rosa_multiflora	Rmu_sc0001637.1_g000008
rosa_rugosa	Rorug01G0423500 Rorug01G0423600
rosa_samantha	Rh1AG447800 Rh1BG403200 Rh1DG433500 Rh7CG247200
rosa_wichuraiana	Rw0G005850 Rw1G038970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	176
AciI	CCGC	1 cut(s)	53
AclWI	GGATC	1 cut(s)	145
AcsI	RAATTY	3 cut(s)	164, 269, 321
AcuI	CTGAAG	1 cut(s)	166
AfaI	GTAC	1 cut(s)	333
AgsI	TTSAA	1 cut(s)	18
AjnI	CCWGG	1 cut(s)	34
AjuI	GAANNNNNNNTTGG	2 cut(s)	294, 326
AloI	GAACNNNNNNTCC	2 cut(s)	258, 290
AluBI	AGCT	3 cut(s)	26, 109, 172
AluI	AGCT	3 cut(s)	26, 109, 172
AlwI	GGATC	1 cut(s)	145
ApeKI	GCWGC	3 cut(s)	6, 62, 65
ApoI	RAATTY	3 cut(s)	164, 269, 321
ArsI	GACNNNNNNTTYG	2 cut(s)	206, 238
Asp700I	GAANNNNTTC	2 cut(s)	165, 273
AspLEI	GCGC	2 cut(s)	178, 246
AspS9I	GGNCC	1 cut(s)	46
AsuII	TTCGAA	1 cut(s)	313
AvaII	GGWCC	1 cut(s)	46
BbsI	GAAGAC	1 cut(s)	322
BbvI	GCAGC	2 cut(s)	49, 52
BccI	CCATC	1 cut(s)	137
BciT130I	CCWGG	1 cut(s)	36
BisI	GCNGC	3 cut(s)	7, 63, 66
BlsI	GCNGC	3 cut(s)	8, 64, 67
Bme1390I	CCNGG	1 cut(s)	36
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	46
BmiI	GGNNCC	1 cut(s)	48
BmrFI	CCNGG	1 cut(s)	36
BpiI	GAAGAC	1 cut(s)	322
Bpu14I	TTCGAA	1 cut(s)	313
BsaXI	ACNNNNNCTCC	2 cut(s)	258, 288
Bse3DI	GCAATG	1 cut(s)	253
BseBI	CCWGG	1 cut(s)	36
BseMI	GCAATG	1 cut(s)	253
BseXI	GCAGC	2 cut(s)	49, 52
Bsh1236I	CGCG	1 cut(s)	176
Bsp119I	TTCGAA	1 cut(s)	313
Bsp143I	GATC	2 cut(s)	150, 278
BspACI	CCGC	1 cut(s)	53
BspFNI	CGCG	1 cut(s)	176
BspHI	TCATGA	1 cut(s)	325
BspLI	GGNNCC	1 cut(s)	48
BspPI	GGATC	1 cut(s)	145
BspQI	GCTCTTC	1 cut(s)	185
BspT104I	TTCGAA	1 cut(s)	313
BsrDI	GCAATG	1 cut(s)	253
BssMI	GATC	2 cut(s)	150, 278
Bst2UI	CCWGG	1 cut(s)	36
Bst4CI	ACNGT	1 cut(s)	82
Bst6I	CTCTTC	2 cut(s)	185, 352
BstBI	TTCGAA	1 cut(s)	313
BstC8I	GCNNGC	1 cut(s)	174
BstFNI	CGCG	1 cut(s)	176
BstHHI	GCGC	2 cut(s)	178, 246
BstKTI	GATC	2 cut(s)	153, 281
BstMBI	GATC	2 cut(s)	150, 278
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstNI	CCWGG	1 cut(s)	36
BstSCI	CCNGG	1 cut(s)	34
BstUI	CGCG	1 cut(s)	176
BstV1I	GCAGC	2 cut(s)	49, 52
BstV2I	GAAGAC	1 cut(s)	322
Cac8I	GCNNGC	1 cut(s)	174
CciI	TCATGA	1 cut(s)	325
CfoI	GCGC	2 cut(s)	178, 246
Cfr13I	GGNCC	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	332
CviAII	CATG	1 cut(s)	326
CviJI	RGCY	6 cut(s)	6, 26, 39, 98, 109, 172
CviKI_1	RGCY	6 cut(s)	6, 26, 39, 98, 109, 172
CviQI	GTAC	1 cut(s)	332
DpnI	GATC	2 cut(s)	152, 280
DpnII	GATC	2 cut(s)	150, 278
Eam1104I	CTCTTC	2 cut(s)	185, 352
EarI	CTCTTC	2 cut(s)	185, 352
Eco32I	GATATC	1 cut(s)	238
Eco47I	GGWCC	1 cut(s)	46
Eco57I	CTGAAG	1 cut(s)	166
EcoO109I	RGGNCCY	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	34
EcoRV	GATATC	1 cut(s)	238
FaeI	CATG	1 cut(s)	329
FaiI	YATR	4 cut(s)	42, 105, 327, 357
FatI	CATG	1 cut(s)	325
Fnu4HI	GCNGC	3 cut(s)	7, 63, 66
Fsp4HI	GCNGC	3 cut(s)	7, 63, 66
GlaI	GCGC	2 cut(s)	177, 245
GluI	GCNGC	3 cut(s)	7, 63, 66
HhaI	GCGC	2 cut(s)	178, 246
Hin1II	CATG	1 cut(s)	329
Hin6I	GCGC	2 cut(s)	176, 244
HinP1I	GCGC	2 cut(s)	176, 244
HinfI	GANTC	1 cut(s)	202
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	1 cut(s)	198
Hpy188III	TCNNGA	2 cut(s)	184, 326
Hpy8I	GTNNAC	1 cut(s)	85
HpyAV	CCTTC	1 cut(s)	320
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4V	TGCA	1 cut(s)	212
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
Hsp92II	CATG	1 cut(s)	329
HspAI	GCGC	2 cut(s)	176, 244
Kzo9I	GATC	2 cut(s)	150, 278
LguI	GCTCTTC	1 cut(s)	185
LpnPI	CCDG	5 cut(s)	21, 48, 63, 169, 202
Lsp1109I	GCAGC	2 cut(s)	49, 52
MalI	GATC	2 cut(s)	152, 280
MboI	GATC	2 cut(s)	150, 278
MboII	GAAGA	4 cut(s)	172, 173, 327, 339
MluCI	AATT	4 cut(s)	119, 164, 269, 321
MnlI	CCTC	3 cut(s)	37, 192, 355
MroXI	GAANNNNTTC	2 cut(s)	165, 273
MseI	TTAA	1 cut(s)	114
MspR9I	CCNGG	1 cut(s)	36
MvaI	CCWGG	1 cut(s)	36
MvnI	CGCG	1 cut(s)	176
MwoI	GCNNNNNNNGC	1 cut(s)	59
NdeII	GATC	2 cut(s)	150, 278
NlaIII	CATG	1 cut(s)	329
NlaIV	GGNNCC	1 cut(s)	48
NspV	TTCGAA	1 cut(s)	313
PagI	TCATGA	1 cut(s)	325
PciSI	GCTCTTC	1 cut(s)	185
PdmI	GAANNNNTTC	2 cut(s)	165, 273
PfeI	GAWTC	1 cut(s)	202
PkrI	GCNGC	3 cut(s)	8, 64, 67
PpuMI	RGGWCCY	1 cut(s)	46
Psp5II	RGGWCCY	1 cut(s)	46
Psp6I	CCWGG	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	34
PspN4I	GGNNCC	1 cut(s)	48
PspPI	GGNCC	1 cut(s)	46
PspPPI	RGGWCCY	1 cut(s)	46
RsaI	GTAC	1 cut(s)	333
RsaNI	GTAC	1 cut(s)	332
SapI	GCTCTTC	1 cut(s)	185
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	3 cut(s)	7, 63, 66
Sau3AI	GATC	2 cut(s)	150, 278
Sau96I	GGNCC	1 cut(s)	46
ScrFI	CCNGG	1 cut(s)	36
SetI	ASST	6 cut(s)	28, 76, 111, 174, 289, 312
SfuI	TTCGAA	1 cut(s)	313
SinI	GGWCC	1 cut(s)	46
Sse9I	AATT	4 cut(s)	119, 164, 269, 321
SsiI	CCGC	1 cut(s)	53
StyD4I	CCNGG	1 cut(s)	34
TaaI	ACNGT	1 cut(s)	82
TaqI	TCGA	4 cut(s)	131, 258, 277, 313
TasI	AATT	4 cut(s)	119, 164, 269, 321
TfiI	GAWTC	1 cut(s)	202
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TseI	GCWGC	3 cut(s)	6, 62, 65
TspDTI	ATGAA	2 cut(s)	314, 342
VpaK11BI	GGWCC	1 cut(s)	46
XapI	RAATTY	3 cut(s)	164, 269, 321
XmnI	GAANNNNTTC	2 cut(s)	165, 273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.