Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0008217

Physical Location & Seq

Genomic Coordinates Forward (+)

20344567 .. 20346221

Gene Structure 1655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g22890.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGGCTGCTATTGTTCAAAGGAAGCTAAAACGCCTGGCTACGAGGACCCTAAGATTCTTGCTGCCGCGACACCTTTTACTGTGAACGAAGTAGAAGCCTTGTATGAGCTTTTTAAGAAATTGAGCAGTTCGATATTTGATGATGGACTTATCCACAAGGAAGAATTTCAGCTCGCGCTCTTCAGGAACAGAAATCGGAGCAATCTTTTTGCAGACAGGATTTTTGACTTATTTGACATCAAGCGCAATGGGGTTATCGAGTTTGGAGAATTTGTTCGATCATTAGGTGTCTTTCACCCCAATGCACCTGTCGAAGACAAAATTTCATTTGCTTTTAGACTGTATAATCTGAGACAGACAGGGTACATTGAGCGAGAGGAGTTGAAGGAGATGGTACTGGCACTTCTGCACGAATCTGATCTGGTACTCTCGGATGATGTCATCGAAGTGATTGTGGATAGGACATACAGTGACGCAGATAAGAAAGGCGATGGGCGGATTGATGAAGAAGAGTGGAAGGAATTTGTGATGAAGCATCCGTCTATGATCAAGAATATGACTCTCCCGTATTTAAAGGATATATCAGTAGCGTTTCCGAGCTTTGTGATGACTTCTGAAGTTGAAGATTCAGAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

213

Amino Acids

24.47

Weight (kDa)

4.77

Isoelectric Point (pI)

39.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24270 AT5G24270 AT5G24270 AT5G24270 AT5G24270
fragaria_vesca	FvH4_7g31620
malus_domestica	MD01G1219100.v1.1 MD07G1288800.v1.1
prunus_persica	Prupe.2G310300_v2.0.a1 Prupe.2G310300_v2.0.a1 Prupe.2G310300_v2.0.a1
pyrus_communis	pycom01g22890 pycom07g26140
rosa_chinensis	RchiOBHm_Chr1g0380691
rosa_multiflora	Rmu_sc0001637.1_g000008
rosa_rugosa	Rorug01G0423500 Rorug01G0423600
rosa_samantha	Rh1AG447800 Rh1BG403200 Rh1DG433500 Rh7CG247200
rosa_wichuraiana	Rw0G005850 Rw1G038970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	68, 176
AciI	CCGC	2 cut(s)	66, 496
AcsI	RAATTY	4 cut(s)	164, 269, 321, 521
AcuI	CTGAAG	2 cut(s)	166, 636
AfaI	GTAC	3 cut(s)	365, 396, 426
AgsI	TTSAA	3 cut(s)	18, 385, 623
AjnI	CCWGG	1 cut(s)	34
AloI	GAACNNNNNNTCC	2 cut(s)	258, 290
AluBI	AGCT	4 cut(s)	26, 109, 172, 600
AluI	AGCT	4 cut(s)	26, 109, 172, 600
Alw26I	GTCTC	1 cut(s)	346
ApeKI	GCWGC	2 cut(s)	6, 62
ApoI	RAATTY	4 cut(s)	164, 269, 321, 521
ArsI	GACNNNNNNTTYG	2 cut(s)	206, 238
Asp700I	GAANNNNTTC	2 cut(s)	165, 273
AspLEI	GCGC	2 cut(s)	178, 246
AspS9I	GGNCC	1 cut(s)	46
AsuHPI	GGTGA	1 cut(s)	287
AvaII	GGWCC	1 cut(s)	46
BarI	GAAGNNNNNNTAC	2 cut(s)	387, 419
BbsI	GAAGAC	1 cut(s)	321
BbvI	GCAGC	1 cut(s)	49
BccI	CCATC	3 cut(s)	137, 385, 485
BciT130I	CCWGG	1 cut(s)	36
BclI	TGATCA	1 cut(s)	546
BcoDI	GTCTC	1 cut(s)	346
BisI	GCNGC	3 cut(s)	7, 63, 66
BlsI	GCNGC	3 cut(s)	8, 64, 67
Bme1390I	CCNGG	1 cut(s)	36
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	46
BmiI	GGNNCC	1 cut(s)	48
BmrFI	CCNGG	1 cut(s)	36
BmsI	GCATC	1 cut(s)	544
BpiI	GAAGAC	1 cut(s)	321
BsaXI	ACNNNNNCTCC	2 cut(s)	258, 288
Bse1I	ACTGG	1 cut(s)	402
Bse3DI	GCAATG	1 cut(s)	253
BseBI	CCWGG	1 cut(s)	36
BseGI	GGATG	2 cut(s)	439, 535
BseMI	GCAATG	1 cut(s)	253
BseMII	CTCAG	1 cut(s)	341
BseNI	ACTGG	1 cut(s)	402
BseRI	GAGGAG	1 cut(s)	392
BseXI	GCAGC	1 cut(s)	49
BsgI	GTGCAG	1 cut(s)	392
Bsh1236I	CGCG	2 cut(s)	68, 176
BsmAI	GTCTC	1 cut(s)	346
Bsp143I	GATC	3 cut(s)	278, 418, 546
BspACI	CCGC	2 cut(s)	66, 496
BspCNI	CTCAG	1 cut(s)	342
BspFNI	CGCG	2 cut(s)	68, 176
BspLI	GGNNCC	1 cut(s)	48
BspQI	GCTCTTC	1 cut(s)	185
BsrDI	GCAATG	1 cut(s)	253
BsrI	ACTGG	1 cut(s)	402
BssMI	GATC	3 cut(s)	278, 418, 546
Bst2UI	CCWGG	1 cut(s)	36
Bst4CI	ACNGT	3 cut(s)	82, 342, 470
Bst6I	CTCTTC	2 cut(s)	185, 504
BstC8I	GCNNGC	1 cut(s)	174
BstDEI	CTNAG	2 cut(s)	51, 350
BstF5I	GGATG	2 cut(s)	439, 535
BstFNI	CGCG	2 cut(s)	68, 176
BstHHI	GCGC	2 cut(s)	178, 246
BstKTI	GATC	3 cut(s)	281, 421, 549
BstMAI	GTCTC	1 cut(s)	346
BstMBI	GATC	3 cut(s)	278, 418, 546
BstNI	CCWGG	1 cut(s)	36
BstSCI	CCNGG	1 cut(s)	34
BstUI	CGCG	2 cut(s)	68, 176
BstV1I	GCAGC	1 cut(s)	49
BstV2I	GAAGAC	1 cut(s)	321
BtgZI	GCGATG	1 cut(s)	504
BtsCI	GGATG	2 cut(s)	439, 535
BtsIMutI	CAGTG	1 cut(s)	475
Cac8I	GCNNGC	1 cut(s)	174
CfoI	GCGC	2 cut(s)	178, 246
Cfr13I	GGNCC	1 cut(s)	46
CseI	GACGC	1 cut(s)	482
Csp6I	GTAC	3 cut(s)	364, 395, 425
CviJI	RGCY	7 cut(s)	6, 26, 39, 98, 109, 172, 600
CviKI_1	RGCY	7 cut(s)	6, 26, 39, 98, 109, 172, 600
CviQI	GTAC	3 cut(s)	364, 395, 425
DdeI	CTNAG	2 cut(s)	51, 350
DpnI	GATC	3 cut(s)	280, 420, 548
DpnII	GATC	3 cut(s)	278, 418, 546
DraI	TTTAAA	1 cut(s)	573
Eam1104I	CTCTTC	2 cut(s)	185, 504
EarI	CTCTTC	2 cut(s)	185, 504
EciI	GGCGGA	1 cut(s)	511
Eco47I	GGWCC	1 cut(s)	46
Eco57I	CTGAAG	2 cut(s)	166, 636
EcoO109I	RGGNCCY	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	34
FaiI	YATR	7 cut(s)	105, 345, 466, 545, 557, 581, 637
FbaI	TGATCA	1 cut(s)	546
Fnu4HI	GCNGC	3 cut(s)	7, 63, 66
FokI	GGATG	2 cut(s)	446, 522
Fsp4HI	GCNGC	3 cut(s)	7, 63, 66
GlaI	GCGC	2 cut(s)	177, 245
GluI	GCNGC	3 cut(s)	7, 63, 66
HgaI	GACGC	1 cut(s)	482
HhaI	GCGC	2 cut(s)	178, 246
Hin6I	GCGC	2 cut(s)	176, 244
HinP1I	GCGC	2 cut(s)	176, 244
HinfI	GANTC	4 cut(s)	55, 413, 559, 626
HphI	GGTGA	1 cut(s)	287
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	7 cut(s)	198, 351, 418, 433, 597, 616, 631
Hpy188III	TCNNGA	2 cut(s)	184, 550
Hpy8I	GTNNAC	1 cut(s)	85
HpyAV	CCTTC	2 cut(s)	379, 511
HpyCH4III	ACNGT	3 cut(s)	82, 342, 470
HpyCH4V	TGCA	3 cut(s)	212, 305, 409
HpyF3I	CTNAG	2 cut(s)	51, 350
HspAI	GCGC	2 cut(s)	176, 244
Ksp22I	TGATCA	1 cut(s)	546
Kzo9I	GATC	3 cut(s)	278, 418, 546
LguI	GCTCTTC	1 cut(s)	185
LmnI	GCTCC	1 cut(s)	198
LpnPI	CCDG	8 cut(s)	21, 48, 169, 202, 321, 345, 383, 407
Lsp1109I	GCAGC	1 cut(s)	49
LweI	GCATC	1 cut(s)	544
MaeIII	GTNAC	1 cut(s)	470
MalI	GATC	3 cut(s)	280, 420, 548
MboI	GATC	3 cut(s)	278, 418, 546
MboII	GAAGA	6 cut(s)	172, 173, 326, 518, 521, 635
MluCI	AATT	5 cut(s)	119, 164, 269, 321, 521
MlyI	GAGTC	1 cut(s)	553
MnlI	CCTC	2 cut(s)	37, 370
MroXI	GAANNNNTTC	2 cut(s)	165, 273
MseI	TTAA	2 cut(s)	114, 572
MslI	CAYNNNNRTG	2 cut(s)	300, 446
MspR9I	CCNGG	1 cut(s)	36
MvaI	CCWGG	1 cut(s)	36
MvnI	CGCG	2 cut(s)	68, 176
NdeII	GATC	3 cut(s)	278, 418, 546
NlaIV	GGNNCC	1 cut(s)	48
NmuCI	GTSAC	1 cut(s)	470
PciSI	GCTCTTC	1 cut(s)	185
PdmI	GAANNNNTTC	2 cut(s)	165, 273
PfeI	GAWTC	3 cut(s)	55, 413, 626
PkrI	GCNGC	3 cut(s)	8, 64, 67
PleI	GAGTC	1 cut(s)	553
PpsI	GAGTC	1 cut(s)	553
PpuMI	RGGWCCY	1 cut(s)	46
Psp5II	RGGWCCY	1 cut(s)	46
Psp6I	CCWGG	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	34
PspN4I	GGNNCC	1 cut(s)	48
PspPI	GGNCC	1 cut(s)	46
PspPPI	RGGWCCY	1 cut(s)	46
RsaI	GTAC	3 cut(s)	365, 396, 426
RsaNI	GTAC	3 cut(s)	364, 395, 425
RseI	CAYNNNNRTG	2 cut(s)	300, 446
SapI	GCTCTTC	1 cut(s)	185
SaqAI	TTAA	2 cut(s)	114, 572
SatI	GCNGC	3 cut(s)	7, 63, 66
Sau3AI	GATC	3 cut(s)	278, 418, 546
Sau96I	GGNCC	1 cut(s)	46
SchI	GAGTC	1 cut(s)	553
ScrFI	CCNGG	1 cut(s)	36
SetI	ASST	7 cut(s)	28, 76, 111, 174, 289, 310, 602
SfaNI	GCATC	1 cut(s)	544
SinI	GGWCC	1 cut(s)	46
SmiMI	CAYNNNNRTG	2 cut(s)	300, 446
Sse9I	AATT	5 cut(s)	119, 164, 269, 321, 521
SsiI	CCGC	2 cut(s)	66, 496
StyD4I	CCNGG	1 cut(s)	34
TaaI	ACNGT	3 cut(s)	82, 342, 470
TaqI	TCGA	5 cut(s)	131, 258, 277, 312, 444
TasI	AATT	5 cut(s)	119, 164, 269, 321, 521
TauI	GCSGC	1 cut(s)	68
TfiI	GAWTC	3 cut(s)	55, 413, 626
Tru1I	TTAA	2 cut(s)	114, 572
Tru9I	TTAA	2 cut(s)	114, 572
TscAI	CASTG	1 cut(s)	475
TseFI	GTSAC	1 cut(s)	470
TseI	GCWGC	2 cut(s)	6, 62
Tsp45I	GTSAC	1 cut(s)	470
TspDTI	ATGAA	3 cut(s)	315, 519, 545
TspGWI	ACGGA	1 cut(s)	528
TspRI	CASTG	1 cut(s)	475
VpaK11BI	GGWCC	1 cut(s)	46
XapI	RAATTY	4 cut(s)	164, 269, 321, 521
XmnI	GAANNNNTTC	2 cut(s)	165, 273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.