Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0008217

Physical Location & Seq

Genomic Coordinates Forward (+)

64566388 .. 64568498

Gene Structure 2111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG433500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGGCTGCTATTCTTCAAAGCCAGAAAAAACTCCGGGCTATGAGGACCCTACAGTTCTTGCTGCTGAAACACCTTTTACAGTAAGTGAAGTAGAAGCCTTGTATGAGCTTTTTAAGAAATTGAGCAGTTCTATATATGATGATGGGCTTATCCACAAGGAAGAATTTCAACTAGCGCTCTTCAGGAACCAGAATAAGAGGAATCTTTTTGCAGACAGGTTGAAGGAGATGGTGCTGGCACTTTTGCATGAATCAGATCTGTTACTTTCAAATGATGTCGTTGAGGCCATTGTGGATAAGACGTTTAAAGATGCAGATAAGAAAGGTGATGGAAGGATTGATCAGCAAGAGTGGAAGGAATTTGTTTTGAAGAATCCAACTTTGATCCTAAAAAATATGACTCTACCGTATCTAAAGGACATAACACTAGCTTTCCCTAGCTTTGTAATGAGTTCTGAAGTTGATGATTCAACAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

159

Amino Acids

18.15

Weight (kDa)

4.75

Isoelectric Point (pI)

30.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_5	PF13202	98 - 122	1.3e-06	EF hand
EF-hand_1	PF00036	98 - 122	9.5e-06	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24270 AT5G24270 AT5G24270 AT5G24270 AT5G24270
fragaria_vesca	FvH4_7g31620
malus_domestica	MD01G1219100.v1.1 MD07G1288800.v1.1
prunus_persica	Prupe.2G310300_v2.0.a1 Prupe.2G310300_v2.0.a1 Prupe.2G310300_v2.0.a1
pyrus_communis	pycom01g22890 pycom07g26140
rosa_chinensis	RchiOBHm_Chr1g0380691
rosa_multiflora	Rmu_sc0001637.1_g000008
rosa_rugosa	Rorug01G0423500 Rorug01G0423600
rosa_samantha	Rh1AG447800 Rh1BG403200 Rh1DG433500 Rh7CG247200
rosa_wichuraiana	Rw0G005850 Rw1G038970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	379
AcsI	RAATTY	2 cut(s)	164, 359
AcuI	CTGAAG	2 cut(s)	166, 477
AfeI	AGCGCT	1 cut(s)	177
AgsI	TTSAA	6 cut(s)	18, 170, 223, 270, 370, 471
AluBI	AGCT	3 cut(s)	109, 431, 441
AluI	AGCT	3 cut(s)	109, 431, 441
AlwI	GGATC	1 cut(s)	379
Aor51HI	AGCGCT	1 cut(s)	177
AoxI	GGCC	1 cut(s)	285
ApeKI	GCWGC	2 cut(s)	6, 62
ApoI	RAATTY	2 cut(s)	164, 359
Asp700I	GAANNNNTTC	1 cut(s)	165
AspLEI	GCGC	1 cut(s)	178
AspS9I	GGNCC	1 cut(s)	46
AsuC2I	CCSGG	1 cut(s)	36
AsuHPI	GGTGA	1 cut(s)	338
AvaII	GGWCC	1 cut(s)	46
BbvI	GCAGC	1 cut(s)	49
BccI	CCATC	3 cut(s)	137, 223, 323
BclI	TGATCA	1 cut(s)	340
BcnI	CCSGG	1 cut(s)	36
BfaI	CTAG	3 cut(s)	173, 428, 438
BfmI	CTRYAG	1 cut(s)	51
BfoI	RGCGCY	1 cut(s)	179
BglII	AGATCT	1 cut(s)	256
BisI	GCNGC	2 cut(s)	7, 63
BlsI	GCNGC	2 cut(s)	8, 64
Bme1390I	CCNGG	1 cut(s)	36
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	46
BmiI	GGNNCC	2 cut(s)	48, 188
BmrFI	CCNGG	1 cut(s)	36
BmsI	GCATC	1 cut(s)	301
BpuMI	CCSGG	1 cut(s)	36
BseXI	GCAGC	1 cut(s)	49
BshFI	GGCC	1 cut(s)	287
BsiSI	CCGG	1 cut(s)	35
BsnI	GGCC	1 cut(s)	287
Bsp143I	GATC	3 cut(s)	256, 340, 384
BspANI	GGCC	1 cut(s)	287
BspLI	GGNNCC	2 cut(s)	48, 188
BspPI	GGATC	1 cut(s)	379
BspQI	GCTCTTC	1 cut(s)	185
BssMI	GATC	3 cut(s)	256, 340, 384
Bst4CI	ACNGT	3 cut(s)	55, 82, 408
Bst6I	CTCTTC	1 cut(s)	185
BstC8I	GCNNGC	1 cut(s)	237
BstH2I	RGCGCY	1 cut(s)	179
BstHHI	GCGC	1 cut(s)	178
BstKTI	GATC	3 cut(s)	259, 343, 387
BstMBI	GATC	3 cut(s)	256, 340, 384
BstSCI	CCNGG	1 cut(s)	34
BstSFI	CTRYAG	1 cut(s)	51
BstV1I	GCAGC	1 cut(s)	49
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
BsuRI	GGCC	1 cut(s)	287
Cac8I	GCNNGC	1 cut(s)	237
CfoI	GCGC	1 cut(s)	178
Cfr13I	GGNCC	1 cut(s)	46
CviAII	CATG	1 cut(s)	248
CviJI	RGCY	9 cut(s)	6, 22, 39, 98, 109, 148, 287, 431, 441
CviKI_1	RGCY	9 cut(s)	6, 22, 39, 98, 109, 148, 287, 431, 441
DpnI	GATC	3 cut(s)	258, 342, 386
DpnII	GATC	3 cut(s)	256, 340, 384
DraI	TTTAAA	1 cut(s)	307
Eam1104I	CTCTTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	185
Eco47I	GGWCC	1 cut(s)	46
Eco47III	AGCGCT	1 cut(s)	177
Eco57I	CTGAAG	2 cut(s)	166, 477
EcoO109I	RGGNCCY	1 cut(s)	46
FaeI	CATG	1 cut(s)	251
FaiI	YATR	8 cut(s)	42, 105, 134, 136, 138, 249, 398, 422
FatI	CATG	1 cut(s)	247
FbaI	TGATCA	1 cut(s)	340
Fnu4HI	GCNGC	2 cut(s)	7, 63
Fsp4HI	GCNGC	2 cut(s)	7, 63
FspBI	CTAG	3 cut(s)	173, 428, 438
GlaI	GCGC	1 cut(s)	177
GluI	GCNGC	2 cut(s)	7, 63
HaeII	RGCGCY	1 cut(s)	179
HaeIII	GGCC	1 cut(s)	287
HapII	CCGG	1 cut(s)	35
HhaI	GCGC	1 cut(s)	178
Hin1II	CATG	1 cut(s)	251
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HinfI	GANTC	5 cut(s)	202, 251, 373, 400, 467
HpaII	CCGG	1 cut(s)	35
HphI	GGTGA	1 cut(s)	338
Hpy188I	TCNGA	2 cut(s)	256, 457
Hpy188III	TCNNGA	1 cut(s)	184
HpyAV	CCTTC	3 cut(s)	217, 327, 349
HpyCH4III	ACNGT	3 cut(s)	55, 82, 408
HpyCH4IV	ACGT	1 cut(s)	302
HpyCH4V	TGCA	3 cut(s)	212, 247, 314
HpySE526I	ACGT	1 cut(s)	302
Hsp92II	CATG	1 cut(s)	251
HspAI	GCGC	1 cut(s)	176
Ksp22I	TGATCA	1 cut(s)	340
Kzo9I	GATC	3 cut(s)	256, 340, 384
LguI	GCTCTTC	1 cut(s)	185
LpnPI	CCDG	6 cut(s)	36, 48, 169, 202, 203, 221
Lsp1109I	GCAGC	1 cut(s)	49
LweI	GCATC	1 cut(s)	301
MaeI	CTAG	3 cut(s)	173, 428, 438
MaeII	ACGT	1 cut(s)	302
MaeIII	GTNAC	1 cut(s)	261
MalI	GATC	3 cut(s)	258, 342, 386
MboI	GATC	3 cut(s)	256, 340, 384
MboII	GAAGA	4 cut(s)	6, 172, 173, 382
MflI	RGATCY	1 cut(s)	256
MluCI	AATT	3 cut(s)	119, 164, 359
MlyI	GAGTC	1 cut(s)	394
MmeI	TCCRAC	1 cut(s)	401
MnlI	CCTC	3 cut(s)	37, 192, 277
MroXI	GAANNNNTTC	1 cut(s)	165
MseI	TTAA	2 cut(s)	114, 306
MspI	CCGG	1 cut(s)	35
MspR9I	CCNGG	1 cut(s)	36
NciI	CCSGG	1 cut(s)	36
NdeII	GATC	3 cut(s)	256, 340, 384
NlaIII	CATG	1 cut(s)	251
NlaIV	GGNNCC	2 cut(s)	48, 188
PciSI	GCTCTTC	1 cut(s)	185
PdmI	GAANNNNTTC	1 cut(s)	165
PfeI	GAWTC	4 cut(s)	202, 251, 373, 467
PkrI	GCNGC	2 cut(s)	8, 64
PleI	GAGTC	1 cut(s)	394
PpsI	GAGTC	1 cut(s)	394
PpuMI	RGGWCCY	1 cut(s)	46
Psp5II	RGGWCCY	1 cut(s)	46
PspN4I	GGNNCC	2 cut(s)	48, 188
PspPI	GGNCC	1 cut(s)	46
PspPPI	RGGWCCY	1 cut(s)	46
PsuI	RGATCY	1 cut(s)	256
SapI	GCTCTTC	1 cut(s)	185
SaqAI	TTAA	2 cut(s)	114, 306
SatI	GCNGC	2 cut(s)	7, 63
Sau3AI	GATC	3 cut(s)	256, 340, 384
Sau96I	GGNCC	1 cut(s)	46
SchI	GAGTC	1 cut(s)	394
ScrFI	CCNGG	1 cut(s)	36
SetI	ASST	7 cut(s)	76, 111, 221, 305, 328, 433, 443
SfaNI	GCATC	1 cut(s)	301
SfcI	CTRYAG	1 cut(s)	51
SinI	GGWCC	1 cut(s)	46
Sse9I	AATT	3 cut(s)	119, 164, 359
SspMI	CTAG	3 cut(s)	173, 428, 438
StyD4I	CCNGG	1 cut(s)	34
TaaI	ACNGT	3 cut(s)	55, 82, 408
TaiI	ACGT	1 cut(s)	305
TasI	AATT	3 cut(s)	119, 164, 359
TfiI	GAWTC	4 cut(s)	202, 251, 373, 467
Tru1I	TTAA	2 cut(s)	114, 306
Tru9I	TTAA	2 cut(s)	114, 306
TseI	GCWGC	2 cut(s)	6, 62
TspDTI	ATGAA	1 cut(s)	264
VpaK11BI	GGWCC	1 cut(s)	46
XapI	RAATTY	2 cut(s)	164, 359
XmnI	GAANNNNTTC	1 cut(s)	165
XspI	CTAG	3 cut(s)	173, 428, 438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.