Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0008217

Physical Location & Seq

Genomic Coordinates Forward (+)

66772640 .. 66777871

Gene Structure 5232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG447800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGGATTCTTACACCACAGCTCTCATTCACAGGATTTCTTTCTTGCTGCTGAAACACCTTTTACAGTAAGTGAAGTAGAAGCCTTGTATGAGCTTTTTAAGAAATTGAGCAGTTCTATATATGATGATGGGCTTATCCACAAGGAAGAATTTCAACTAGCGCTCTTCAGGAACCAGAATAAGAGGAATCTTTTTGCAGACAGGATTTTCGACTTATTTGATATCAAGCGCAATGGGGTTATTGAGTTTGGAGAATTTGTTCGATCATTGGGTGTCTTTCACCCCAATGCACCTGTAGAAAACAAAATTGCATTTGCGTTTAGACTGTATGATCTGAGACAAACAGGGTTCATTGAACGAGAGGAGTTGAAGGAGATGGTGCTGGCACTTTTGCATGAATCAGATCTGTTACTTTCAAATGATGTCGTTGAAGCCATTGTGGATAAGACGTTTAAAGATGCAGATAAGAAAGGTGATGGAAGGATTGATCAGCAAGAGTGGAAGGAATTTGTTTTGAAGCATCCAACTTTGATCCTAAAGAATATGACTCTACCGTATCTAAAGGACATAACACTAGCTTTCCCTAGCTTTGTAATGAGTTCTGAAGTTGAAGATTCAGATATAACCCATGAATTGCAGCTCAGAGATAAGTCACTCCCCATCCACAAGCTTTCATGGCCGATCATTTTCACCTCTTTCCCAGTTCGTTTGATTGGATCCAGTGGATTATACTCTGGTAAAAGATCGAAAAAAGGATTGATTTCTCACCTGGTTGGATTGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

261

Amino Acids

30.01

Weight (kDa)

5.94

Isoelectric Point (pI)

44.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	100 - 170	1.1e-11	EF-hand domain pair
EF-hand_5	PF13202	147 - 171	2.7e-06	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24270 AT5G24270 AT5G24270 AT5G24270 AT5G24270
fragaria_vesca	FvH4_7g31620
malus_domestica	MD01G1219100.v1.1 MD07G1288800.v1.1
prunus_persica	Prupe.2G310300_v2.0.a1 Prupe.2G310300_v2.0.a1 Prupe.2G310300_v2.0.a1
pyrus_communis	pycom01g22890 pycom07g26140
rosa_chinensis	RchiOBHm_Chr1g0380691
rosa_multiflora	Rmu_sc0001637.1_g000008
rosa_rugosa	Rorug01G0423500 Rorug01G0423600
rosa_samantha	Rh1AG447800 Rh1BG403200 Rh1DG433500 Rh7CG247200
rosa_wichuraiana	Rw0G005850 Rw1G038970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	526, 711, 724
AcoI	YGGCCR	1 cut(s)	677
AcsI	RAATTY	3 cut(s)	149, 254, 506
AcuI	CTGAAG	2 cut(s)	151, 624
AfeI	AGCGCT	1 cut(s)	162
AgsI	TTSAA	7 cut(s)	155, 356, 370, 417, 431, 517, 611
AjnI	CCWGG	1 cut(s)	768
AloI	GAACNNNNNNTCC	2 cut(s)	243, 275
AluBI	AGCT	6 cut(s)	21, 94, 578, 588, 640, 670
AluI	AGCT	6 cut(s)	21, 94, 578, 588, 640, 670
Alw26I	GTCTC	1 cut(s)	331
AlwI	GGATC	3 cut(s)	526, 711, 724
Aor51HI	AGCGCT	1 cut(s)	162
AoxI	GGCC	1 cut(s)	677
ApeKI	GCWGC	2 cut(s)	47, 637
ApoI	RAATTY	3 cut(s)	149, 254, 506
ArsI	GACNNNNNNTTYG	2 cut(s)	191, 223
Asp700I	GAANNNNTTC	2 cut(s)	150, 258
AspLEI	GCGC	2 cut(s)	163, 231
AsuHPI	GGTGA	4 cut(s)	272, 485, 682, 758
BamHI	GGATCC	1 cut(s)	716
BbvI	GCAGC	2 cut(s)	34, 649
BccI	CCATC	4 cut(s)	122, 370, 470, 668
BciT130I	CCWGG	1 cut(s)	770
BclI	TGATCA	1 cut(s)	487
BcoDI	GTCTC	1 cut(s)	331
BfaI	CTAG	3 cut(s)	158, 575, 585
BfmI	CTRYAG	1 cut(s)	294
BfoI	RGCGCY	1 cut(s)	164
BglII	AGATCT	1 cut(s)	403
BisI	GCNGC	2 cut(s)	48, 638
BlsI	GCNGC	2 cut(s)	49, 639
Bme1390I	CCNGG	1 cut(s)	770
BmiI	GGNNCC	2 cut(s)	173, 718
BmrFI	CCNGG	1 cut(s)	770
BmrI	ACTGGG	1 cut(s)	695
BmsI	GCATC	2 cut(s)	448, 529
BmuI	ACTGGG	1 cut(s)	695
BsaXI	ACNNNNNCTCC	2 cut(s)	243, 273
Bse1I	ACTGG	2 cut(s)	701, 720
Bse3DI	GCAATG	1 cut(s)	238
BseBI	CCWGG	1 cut(s)	770
BseGI	GGATG	2 cut(s)	520, 660
BseMI	GCAATG	1 cut(s)	238
BseMII	CTCAG	2 cut(s)	326, 655
BseNI	ACTGG	2 cut(s)	701, 720
BseRI	GAGGAG	1 cut(s)	377
BseXI	GCAGC	2 cut(s)	34, 649
BshFI	GGCC	1 cut(s)	679
BsmAI	GTCTC	1 cut(s)	331
BsnI	GGCC	1 cut(s)	679
Bsp143I	GATC	8 cut(s)	263, 331, 403, 487, 531, 681, 716, 743
BspANI	GGCC	1 cut(s)	679
BspCNI	CTCAG	2 cut(s)	327, 654
BspLI	GGNNCC	2 cut(s)	173, 718
BspPI	GGATC	3 cut(s)	526, 711, 724
BspQI	GCTCTTC	1 cut(s)	170
BsrDI	GCAATG	1 cut(s)	238
BsrI	ACTGG	2 cut(s)	701, 720
BssMI	GATC	8 cut(s)	263, 331, 403, 487, 531, 681, 716, 743
Bst2UI	CCWGG	1 cut(s)	770
Bst4CI	ACNGT	3 cut(s)	67, 327, 555
Bst6I	CTCTTC	1 cut(s)	170
BstC8I	GCNNGC	1 cut(s)	384
BstDEI	CTNAG	2 cut(s)	335, 641
BstF5I	GGATG	2 cut(s)	520, 660
BstH2I	RGCGCY	1 cut(s)	164
BstHHI	GCGC	2 cut(s)	163, 231
BstKTI	GATC	8 cut(s)	266, 334, 406, 490, 534, 684, 719, 746
BstMAI	GTCTC	1 cut(s)	331
BstMBI	GATC	8 cut(s)	263, 331, 403, 487, 531, 681, 716, 743
BstMWI	GCNNNNNNNGC	1 cut(s)	676
BstNI	CCWGG	1 cut(s)	770
BstSCI	CCNGG	1 cut(s)	768
BstSFI	CTRYAG	1 cut(s)	294
BstV1I	GCAGC	2 cut(s)	34, 649
BstX2I	RGATCY	2 cut(s)	403, 716
BstYI	RGATCY	2 cut(s)	403, 716
BsuRI	GGCC	1 cut(s)	679
BtsCI	GGATG	2 cut(s)	520, 660
BtsIMutI	CAGTG	1 cut(s)	727
Cac8I	GCNNGC	1 cut(s)	384
CfoI	GCGC	2 cut(s)	163, 231
CsiI	ACCWGGT	1 cut(s)	768
CviAII	CATG	3 cut(s)	395, 629, 675
DdeI	CTNAG	2 cut(s)	335, 641
DpnI	GATC	8 cut(s)	265, 333, 405, 489, 533, 683, 718, 745
DpnII	GATC	8 cut(s)	263, 331, 403, 487, 531, 681, 716, 743
DraI	TTTAAA	1 cut(s)	454
EaeI	YGGCCR	1 cut(s)	677
Eam1104I	CTCTTC	1 cut(s)	170
EarI	CTCTTC	1 cut(s)	170
Eco32I	GATATC	1 cut(s)	223
Eco47III	AGCGCT	1 cut(s)	162
Eco57I	CTGAAG	2 cut(s)	151, 624
EcoRII	CCWGG	1 cut(s)	768
EcoRV	GATATC	1 cut(s)	223
FaeI	CATG	3 cut(s)	398, 632, 678
FatI	CATG	3 cut(s)	394, 628, 674
FbaI	TGATCA	1 cut(s)	487
Fnu4HI	GCNGC	2 cut(s)	48, 638
FokI	GGATG	2 cut(s)	507, 647
Fsp4HI	GCNGC	2 cut(s)	48, 638
FspBI	CTAG	3 cut(s)	158, 575, 585
GlaI	GCGC	2 cut(s)	162, 230
GluI	GCNGC	2 cut(s)	48, 638
HaeII	RGCGCY	1 cut(s)	164
HaeIII	GGCC	1 cut(s)	679
HhaI	GCGC	2 cut(s)	163, 231
Hin1II	CATG	3 cut(s)	398, 632, 678
Hin6I	GCGC	2 cut(s)	161, 229
HinP1I	GCGC	2 cut(s)	161, 229
HindIII	AAGCTT	1 cut(s)	668
HinfI	GANTC	5 cut(s)	6, 187, 398, 547, 614
HphI	GGTGA	4 cut(s)	272, 485, 682, 758
Hpy188I	TCNGA	5 cut(s)	336, 403, 604, 619, 644
Hpy188III	TCNNGA	1 cut(s)	169
HpyAV	CCTTC	3 cut(s)	364, 474, 496
HpyCH4III	ACNGT	3 cut(s)	67, 327, 555
HpyCH4IV	ACGT	1 cut(s)	449
HpyCH4V	TGCA	6 cut(s)	197, 290, 311, 394, 461, 637
HpyF10VI	GCNNNNNNNGC	1 cut(s)	676
HpyF3I	CTNAG	2 cut(s)	335, 641
HpySE526I	ACGT	1 cut(s)	449
Hsp92II	CATG	3 cut(s)	398, 632, 678
HspAI	GCGC	2 cut(s)	161, 229
Ksp22I	TGATCA	1 cut(s)	487
Kzo9I	GATC	8 cut(s)	263, 331, 403, 487, 531, 681, 716, 743
LguI	GCTCTTC	1 cut(s)	170
Lsp1109I	GCAGC	2 cut(s)	34, 649
LweI	GCATC	2 cut(s)	448, 529
MabI	ACCWGGT	1 cut(s)	768
MaeI	CTAG	3 cut(s)	158, 575, 585
MaeII	ACGT	1 cut(s)	449
MaeIII	GTNAC	2 cut(s)	408, 651
MalI	GATC	8 cut(s)	265, 333, 405, 489, 533, 683, 718, 745
MboI	GATC	8 cut(s)	263, 331, 403, 487, 531, 681, 716, 743
MboII	GAAGA	3 cut(s)	157, 158, 623
MflI	RGATCY	2 cut(s)	403, 716
MluCI	AATT	6 cut(s)	104, 149, 254, 306, 506, 632
MlyI	GAGTC	1 cut(s)	541
MmeI	TCCRAC	2 cut(s)	548, 754
MnlI	CCTC	3 cut(s)	177, 355, 703
MroXI	GAANNNNTTC	2 cut(s)	150, 258
MseI	TTAA	2 cut(s)	99, 453
MslI	CAYNNNNRTG	1 cut(s)	285
MspR9I	CCNGG	1 cut(s)	770
MvaI	CCWGG	1 cut(s)	770
MwoI	GCNNNNNNNGC	1 cut(s)	676
NdeII	GATC	8 cut(s)	263, 331, 403, 487, 531, 681, 716, 743
NlaIII	CATG	3 cut(s)	398, 632, 678
NlaIV	GGNNCC	2 cut(s)	173, 718
NmuCI	GTSAC	1 cut(s)	651
PciSI	GCTCTTC	1 cut(s)	170
PdmI	GAANNNNTTC	2 cut(s)	150, 258
PfeI	GAWTC	4 cut(s)	6, 187, 398, 614
PkrI	GCNGC	2 cut(s)	49, 639
PleI	GAGTC	1 cut(s)	541
PpsI	GAGTC	1 cut(s)	541
Psp6I	CCWGG	1 cut(s)	768
PspGI	CCWGG	1 cut(s)	768
PspN4I	GGNNCC	2 cut(s)	173, 718
PsuI	RGATCY	2 cut(s)	403, 716
RseI	CAYNNNNRTG	1 cut(s)	285
SapI	GCTCTTC	1 cut(s)	170
SaqAI	TTAA	2 cut(s)	99, 453
SatI	GCNGC	2 cut(s)	48, 638
Sau3AI	GATC	8 cut(s)	263, 331, 403, 487, 531, 681, 716, 743
SchI	GAGTC	1 cut(s)	541
ScrFI	CCNGG	1 cut(s)	770
SexAI	ACCWGGT	1 cut(s)	768
SfaNI	GCATC	2 cut(s)	448, 529
SfcI	CTRYAG	1 cut(s)	294
SmiMI	CAYNNNNRTG	1 cut(s)	285
Sse9I	AATT	6 cut(s)	104, 149, 254, 306, 506, 632
SspMI	CTAG	3 cut(s)	158, 575, 585
StyD4I	CCNGG	1 cut(s)	768
TaaI	ACNGT	3 cut(s)	67, 327, 555
TaiI	ACGT	1 cut(s)	452
TaqI	TCGA	3 cut(s)	210, 262, 746
TasI	AATT	6 cut(s)	104, 149, 254, 306, 506, 632
TfiI	GAWTC	4 cut(s)	6, 187, 398, 614
Tru1I	TTAA	2 cut(s)	99, 453
Tru9I	TTAA	2 cut(s)	99, 453
TscAI	CASTG	1 cut(s)	727
TseFI	GTSAC	1 cut(s)	651
TseI	GCWGC	2 cut(s)	47, 637
Tsp45I	GTSAC	1 cut(s)	651
TspDTI	ATGAA	4 cut(s)	340, 411, 645, 663
TspRI	CASTG	1 cut(s)	727
XapI	RAATTY	3 cut(s)	149, 254, 506
XmnI	GAANNNNTTC	2 cut(s)	150, 258
XspI	CTAG	3 cut(s)	158, 575, 585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.