Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0008217

Physical Location & Seq

Genomic Coordinates Reverse (-)

23239641 .. 23244278

Gene Structure 4638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG247200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGGTTGCTATTCTTCAAAGCCAGAAAAAACTCCGGGCTATGAGGATCCTACAGTTCTTGCTGCTGAAACACCTTTTACAGTAAGTGAAGTAGAAGCCTTGTATGAGCTTTTTAAGAAATTGAGCAGTTCTATATATGATGATGGGCTTATCCACAAGGAAGAATTTCAACTAGCGCTCTTCAGGAACCAGAATAAGAGGAATCTTTTTGCAGACAGGTGTAGTCAACTTCAAAGTTTGGCTCTGTCACTTGGATCTTGTGGTCGCCTCCGCTTTGTAGTTGTGCCCTTAAATTTGAAATGTTTGGCGTCGGTGGCCTGTGATGGTTGGAACTTGGAAGAAGTAGCTCCAGCATTAAACTGTATACAAGTAGAACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

126

Amino Acids

14.02

Weight (kDa)

4.97

Isoelectric Point (pI)

55.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24270 AT5G24270 AT5G24270 AT5G24270 AT5G24270
fragaria_vesca	FvH4_7g31620
malus_domestica	MD01G1219100.v1.1 MD07G1288800.v1.1
prunus_persica	Prupe.2G310300_v2.0.a1 Prupe.2G310300_v2.0.a1 Prupe.2G310300_v2.0.a1
pyrus_communis	pycom01g22890 pycom07g26140
rosa_chinensis	RchiOBHm_Chr1g0380691
rosa_multiflora	Rmu_sc0001637.1_g000008
rosa_rugosa	Rorug01G0423500 Rorug01G0423600
rosa_samantha	Rh1AG447800 Rh1BG403200 Rh1DG433500 Rh7CG247200
rosa_wichuraiana	Rw0G005850 Rw1G038970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	364
AciI	CCGC	1 cut(s)	271
AclWI	GGATC	3 cut(s)	41, 54, 262
AcsI	RAATTY	2 cut(s)	164, 292
AcuI	CTGAAG	1 cut(s)	166
AcyI	GRCGYC	1 cut(s)	308
AfeI	AGCGCT	1 cut(s)	177
AgsI	TTSAA	4 cut(s)	18, 170, 233, 298
AluBI	AGCT	2 cut(s)	109, 347
AluI	AGCT	2 cut(s)	109, 347
AlwI	GGATC	3 cut(s)	41, 54, 262
Aor51HI	AGCGCT	1 cut(s)	177
AoxI	GGCC	1 cut(s)	315
ApeKI	GCWGC	1 cut(s)	62
ApoI	RAATTY	2 cut(s)	164, 292
Asp700I	GAANNNNTTC	1 cut(s)	165
AspLEI	GCGC	1 cut(s)	178
AsuC2I	CCSGG	1 cut(s)	36
BaeGI	GKGCMC	1 cut(s)	288
BamHI	GGATCC	1 cut(s)	46
BbvI	GCAGC	1 cut(s)	49
BccI	CCATC	2 cut(s)	137, 317
BcnI	CCSGG	1 cut(s)	36
BfaI	CTAG	1 cut(s)	173
BfmI	CTRYAG	1 cut(s)	51
BfoI	RGCGCY	1 cut(s)	179
BisI	GCNGC	1 cut(s)	63
BlsI	GCNGC	1 cut(s)	64
Bme1390I	CCNGG	1 cut(s)	36
BmiI	GGNNCC	2 cut(s)	48, 188
BmrFI	CCNGG	1 cut(s)	36
BpmI	CTGGAG	1 cut(s)	333
BpuMI	CCSGG	1 cut(s)	36
BsaHI	GRCGYC	1 cut(s)	308
BseSI	GKGCMC	1 cut(s)	288
BseXI	GCAGC	1 cut(s)	49
BshFI	GGCC	1 cut(s)	317
BsiSI	CCGG	1 cut(s)	35
BsnI	GGCC	1 cut(s)	317
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp143I	GATC	2 cut(s)	46, 254
BspACI	CCGC	1 cut(s)	271
BspANI	GGCC	1 cut(s)	317
BspLI	GGNNCC	2 cut(s)	48, 188
BspPI	GGATC	3 cut(s)	41, 54, 262
BspQI	GCTCTTC	1 cut(s)	185
BssMI	GATC	2 cut(s)	46, 254
BssNAI	GTATAC	1 cut(s)	365
BssNI	GRCGYC	1 cut(s)	308
Bst1107I	GTATAC	1 cut(s)	365
Bst4CI	ACNGT	4 cut(s)	55, 82, 362, 378
Bst6I	CTCTTC	1 cut(s)	185
BstACI	GRCGYC	1 cut(s)	308
BstH2I	RGCGCY	1 cut(s)	179
BstHHI	GCGC	1 cut(s)	178
BstKTI	GATC	2 cut(s)	49, 257
BstMBI	GATC	2 cut(s)	46, 254
BstMWI	GCNNNNNNNGC	1 cut(s)	314
BstSCI	CCNGG	1 cut(s)	34
BstSFI	CTRYAG	1 cut(s)	51
BstSLI	GKGCMC	1 cut(s)	288
BstV1I	GCAGC	1 cut(s)	49
BstX2I	RGATCY	2 cut(s)	46, 254
BstYI	RGATCY	2 cut(s)	46, 254
BstZ17I	GTATAC	1 cut(s)	365
BsuRI	GGCC	1 cut(s)	317
CfoI	GCGC	1 cut(s)	178
CseI	GACGC	1 cut(s)	297
CviJI	RGCY	8 cut(s)	22, 39, 98, 109, 148, 242, 317, 347
CviKI_1	RGCY	8 cut(s)	22, 39, 98, 109, 148, 242, 317, 347
DpnI	GATC	2 cut(s)	48, 256
DpnII	GATC	2 cut(s)	46, 254
Eam1104I	CTCTTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	185
Eco47III	AGCGCT	1 cut(s)	177
Eco57I	CTGAAG	1 cut(s)	166
FaiI	YATR	6 cut(s)	42, 105, 134, 136, 138, 365
FblI	GTMKAC	1 cut(s)	364
Fnu4HI	GCNGC	1 cut(s)	63
Fsp4HI	GCNGC	1 cut(s)	63
FspBI	CTAG	1 cut(s)	173
GlaI	GCGC	1 cut(s)	177
GluI	GCNGC	1 cut(s)	63
GsuI	CTGGAG	1 cut(s)	333
HaeII	RGCGCY	1 cut(s)	179
HaeIII	GGCC	1 cut(s)	317
HapII	CCGG	1 cut(s)	35
HgaI	GACGC	1 cut(s)	297
HhaI	GCGC	1 cut(s)	178
Hin1I	GRCGYC	1 cut(s)	308
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HincII	GTYRAC	1 cut(s)	227
HindII	GTYRAC	1 cut(s)	227
HinfI	GANTC	1 cut(s)	202
HpaII	CCGG	1 cut(s)	35
Hpy166II	GTNNAC	2 cut(s)	227, 365
Hpy188III	TCNNGA	1 cut(s)	184
Hpy8I	GTNNAC	2 cut(s)	227, 365
Hpy99I	CGWCG	1 cut(s)	313
HpyCH4III	ACNGT	4 cut(s)	55, 82, 362, 378
HpyCH4V	TGCA	1 cut(s)	212
HpyF10VI	GCNNNNNNNGC	1 cut(s)	314
Hsp92I	GRCGYC	1 cut(s)	308
HspAI	GCGC	1 cut(s)	176
Kzo9I	GATC	2 cut(s)	46, 254
LguI	GCTCTTC	1 cut(s)	185
LmnI	GCTCC	1 cut(s)	352
LpnPI	CCDG	7 cut(s)	36, 48, 169, 202, 203, 331, 363
Lsp1109I	GCAGC	1 cut(s)	49
MaeI	CTAG	1 cut(s)	173
MaeIII	GTNAC	1 cut(s)	246
MalI	GATC	2 cut(s)	48, 256
MboI	GATC	2 cut(s)	46, 254
MboII	GAAGA	4 cut(s)	6, 172, 173, 350
MflI	RGATCY	2 cut(s)	46, 254
MhlI	GDGCHC	1 cut(s)	288
MluCI	AATT	3 cut(s)	119, 164, 292
MmeI	TCCRAC	1 cut(s)	308
MnlI	CCTC	3 cut(s)	37, 192, 278
MroXI	GAANNNNTTC	1 cut(s)	165
MseI	TTAA	3 cut(s)	114, 290, 356
MspI	CCGG	1 cut(s)	35
MspR9I	CCNGG	1 cut(s)	36
MwoI	GCNNNNNNNGC	1 cut(s)	314
NciI	CCSGG	1 cut(s)	36
NdeII	GATC	2 cut(s)	46, 254
NlaIV	GGNNCC	2 cut(s)	48, 188
NmuCI	GTSAC	1 cut(s)	246
PciSI	GCTCTTC	1 cut(s)	185
PdmI	GAANNNNTTC	1 cut(s)	165
PfeI	GAWTC	1 cut(s)	202
PkrI	GCNGC	1 cut(s)	64
PspN4I	GGNNCC	2 cut(s)	48, 188
PsuI	RGATCY	2 cut(s)	46, 254
SapI	GCTCTTC	1 cut(s)	185
SaqAI	TTAA	3 cut(s)	114, 290, 356
SatI	GCNGC	1 cut(s)	63
Sau3AI	GATC	2 cut(s)	46, 254
ScrFI	CCNGG	1 cut(s)	36
SduI	GDGCHC	1 cut(s)	288
SetI	ASST	4 cut(s)	76, 111, 221, 349
SfcI	CTRYAG	1 cut(s)	51
Sse9I	AATT	3 cut(s)	119, 164, 292
SsiI	CCGC	1 cut(s)	271
SspMI	CTAG	1 cut(s)	173
StyD4I	CCNGG	1 cut(s)	34
TaaI	ACNGT	4 cut(s)	55, 82, 362, 378
TasI	AATT	3 cut(s)	119, 164, 292
TfiI	GAWTC	1 cut(s)	202
Tru1I	TTAA	3 cut(s)	114, 290, 356
Tru9I	TTAA	3 cut(s)	114, 290, 356
TseFI	GTSAC	1 cut(s)	246
TseI	GCWGC	1 cut(s)	62
Tsp45I	GTSAC	1 cut(s)	246
XapI	RAATTY	2 cut(s)	164, 292
XmiI	GTMKAC	1 cut(s)	364
XmnI	GAANNNNTTC	1 cut(s)	165
XspI	CTAG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.