AT5G24450

Transcription factor

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
8348160 .. 8353303
5144 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G24450.2

Sequence Viewer

Length: 1665 bp
ATGGGAATCATTGAAAACGGAACTATCTCGGGTAACTTGCCTAGCAAGGAGGCGTTTGTGGTTCACTATCCTGGCTATCCATCATCTATTTCCCGAGCCGTGGAGACTCTCGGGGGAATCCAAGGAATCACAACCGCAAGAGAATCAACGTCAAACAAGCTTGAGCTGCATTTCCGCCCTGAAGACCCTTCTGCACATCCTGCCTATGGAGAACGACGTCATTGTAATGGTTTTCTGTTAAAAATTTCGAAGGAGGATGTTAAGAAAGATTCTCTGCCTGAAAGTCAACCTGTTATTTCCACTAGCGATGCATGCTTACCAGAAGTGCGCCCAGCTCTATGTGCTGATATTGTAGCTCGTGTGTCTGAATCGTATTGCTTTGATGGCATGGTCGACTACCAGCATGTAATTCCTATTCACGCTGATATTGCACAGCAGAAGAAGAGAAAATGGATGGAGGTGAAGTCGCTTGCAGGAAAAAATGATCTAATGGACATGGCTGATGAAGATGTAATGATGTTATTGCCACAGTTCTTTTCACCCAAAGATAGGCCAGACAACCTGGTGCTGAGACTTCCAGTAACATCAAGCCCAAAAAAGAAAGATGAGGAACTAACTCAGAATCTTTATGAGATAGATATTGGCCCAGTATTTGCAATTGATTTTAGTGTCAAAGAGATCCCAAAGATATTAAAATGGGAAGACTATATCGTTCCCACCTCCAACCAATGGAAATGGCAGGTAGCAGTGTCTGCATTGTTTGAAGAGCGACCTGTGTGGACAAGAGATTCCATAGTCCAACGACTACTCGATAAAGGTCTTACATGCACACATCATATGTTAAACAGGTTTCTTCTTAGGGCTGCATATTATTTCTCGGGTGGTCCATTTCTTAGGTTCTGGATTAAAAGAGGCTATGATCCACGGAAAGATCCTGAATCTCGTGTATTCCAGAGAATGGAATTCAGGGTTCCACCTGAATTAAAGGGTTATTGTGATTCCAATGCAACTAACAAGTCAAAGCCAAGCTGGGATGACATTTGTGCGTTTAAAGTATTTCCTTTCAAATGCCAAACATTTCTACAGTTATTTGAACTTGACGATGAGTACATTCAACAAGAGATAAGAAAGCCTCCCAAGCAGACTACTTGTAATTATAAAACAGGATGGTTCTCTGAAGCGCTGCTTGACAATTTGAGACTCCGTGTAGCTGTGAGGTTTGTATCTGTGTTTCCTGAGCCAGGTTTCGAAGACGTTTTTAAATCTATTCAAGAAGAGTTTGAGAGGTCTGAAAAGACACGTATTCAGAAAGATGCACTGCAACCAAGTCAACGGAATCACCAGGAAACAACTAAAGATATGAAAAAGTGTAAAAACACAAACAAGGAGAAAGATGATGATGTTAATGCGGATGAGGATTCTGAAGACTTGGATGATGAATACGAGGAGGCTGCAAATGATGATGACATATCAATAAGTTCTCATGGATATGGTGACATGGAGAACAACTCCAGAACCTATCTGCAAGGTTTGTTCAATAGGTTTCCAAGCAGCGCATCAGCTTTGTATGGTAGTGCCAATGATGATAATGATAGCGATGGAGAGTATCCGATTTACGAGCAAGAATCCAACGCTCTCGACGATGACGAGGAGGATGATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

554

Amino Acids

63.64

Weight (kDa)

4.86

Isoelectric Point (pI)

47.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tau95_N PF17682 20 - 135 6.1e-24 Tau95 Triple barrel domain
Tau95 PF09734 173 - 323 2.2e-26 RNA polymerase III transcription factor (TF)IIIC subunit HTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1158
AatII GACGTC 1 cut(s) 220
Acc36I ACCTGC 1 cut(s) 730
AccB7I CCANNNNNTGG 2 cut(s) 729, 958
AccI GTMKAC 1 cut(s) 393
AciI CCGC 3 cut(s) 135, 175, 1409
AclWI GGATC 3 cut(s) 673, 914, 926
AcsI RAATTY 2 cut(s) 243, 962
AcuI CTGAAG 3 cut(s) 201, 1197, 1443
AcyI GRCGYC 1 cut(s) 217
AfaI GTAC 1 cut(s) 1109
AfeI AGCGCT 1 cut(s) 1182
AfiI CCNNNNNNNGG 6 cut(s) 100, 206, 549, 729, 958, 1241
AflIII ACRYGT 1 cut(s) 1298
AgsI TTSAA 7 cut(s) 14, 764, 1066, 1094, 1115, 1271, 1537
AjnI CCWGG 4 cut(s) 70, 561, 1240, 1341
AluBI AGCT 7 cut(s) 160, 166, 335, 356, 1029, 1211, 1562
AluI AGCT 7 cut(s) 160, 166, 335, 356, 1029, 1211, 1562
Alw26I GTCTC 3 cut(s) 98, 565, 1192
AlwI GGATC 3 cut(s) 673, 914, 926
AlwNI CAGNNNCTG 1 cut(s) 752
Ama87I CYCGRG 4 cut(s) 28, 93, 110, 877
Aor51HI AGCGCT 1 cut(s) 1182
AoxI GGCC 2 cut(s) 551, 643
ApeKI GCWGC 5 cut(s) 166, 863, 1183, 1451, 1551
ApoI RAATTY 2 cut(s) 243, 962
AspLEI GCGC 3 cut(s) 330, 1183, 1556
AspS9I GGNCC 2 cut(s) 644, 884
AsuHPI GGTGA 4 cut(s) 472, 531, 1331, 1505
AsuII TTCGAA 2 cut(s) 248, 1248
AvaI CYCGRG 4 cut(s) 28, 93, 110, 877
AvaII GGWCC 1 cut(s) 884
BauI CACGAG 2 cut(s) 357, 942
BbsI GAAGAC 4 cut(s) 189, 708, 1257, 1431
BbvI GCAGC 5 cut(s) 153, 850, 1170, 1438, 1563
BccI CCATC 5 cut(s) 88, 377, 448, 1161, 1592
BceAI ACGGC 1 cut(s) 83
BcgI CGANNNNNNTGC 2 cut(s) 1433, 1467
BciT130I CCWGG 4 cut(s) 72, 563, 1242, 1343
BciVI GTATCC 1 cut(s) 1617
BcoDI GTCTC 3 cut(s) 98, 565, 1192
BfaI CTAG 2 cut(s) 42, 303
BfmI CTRYAG 1 cut(s) 1082
BfoI RGCGCY 1 cut(s) 1184
BfuAI ACCTGC 1 cut(s) 730
BfuI GTATCC 1 cut(s) 1617
BisI GCNGC 5 cut(s) 167, 864, 1184, 1452, 1552
BlsI GCNGC 5 cut(s) 168, 865, 1185, 1453, 1553
Bme1390I CCNGG 4 cut(s) 72, 563, 1242, 1343
Bme18I GGWCC 1 cut(s) 884
BmeT110I CYCGRG 4 cut(s) 28, 93, 110, 877
BmgT120I GGNCC 2 cut(s) 644, 884
BmiI GGNNCC 1 cut(s) 972
BmrFI CCNGG 4 cut(s) 72, 563, 1242, 1343
BmrI ACTGGG 1 cut(s) 641
BmsI GCATC 3 cut(s) 298, 1303, 1565
BmuI ACTGGG 1 cut(s) 641
BpiI GAAGAC 4 cut(s) 189, 708, 1257, 1431
BplI GAGNNNNNCTC 2 cut(s) 1493, 1525
BpmI CTGGAG 1 cut(s) 1495
Bpu10I CCTNAGC 1 cut(s) 1236
Bpu14I TTCGAA 2 cut(s) 248, 1248
BpuEI CTTGAG 1 cut(s) 182
BsaAI YACGTR 1 cut(s) 1301
BsaHI GRCGYC 1 cut(s) 217
BsaJI CCNNGG 3 cut(s) 99, 121, 923
BsaXI ACNNNNNCTCC 2 cut(s) 449, 479
Bsc4I CCNNNNNNNGG 6 cut(s) 100, 206, 549, 729, 958, 1241
Bse1I ACTGG 2 cut(s) 578, 647
BseBI CCWGG 4 cut(s) 72, 563, 1242, 1343
BseDI CCNNGG 3 cut(s) 99, 121, 923
BseGI GGATG 8 cut(s) 196, 262, 459, 1039, 1172, 1417, 1438, 1660
BseLI CCNNNNNNNGG 6 cut(s) 100, 206, 549, 729, 958, 1241
BseMII CTCAG 3 cut(s) 560, 632, 1227
BseNI ACTGG 2 cut(s) 578, 647
BseRI GAGGAG 2 cut(s) 1460, 1664
BseXI GCAGC 5 cut(s) 153, 850, 1170, 1438, 1563
BseYI CCCAGC 2 cut(s) 331, 1029
BsgI GTGCAG 1 cut(s) 177
BshFI GGCC 2 cut(s) 553, 645
BsiHKCI CYCGRG 4 cut(s) 28, 93, 110, 877
BslI CCNNNNNNNGG 6 cut(s) 100, 206, 549, 729, 958, 1241
BsmAI GTCTC 3 cut(s) 98, 565, 1192
BsnI GGCC 2 cut(s) 553, 645
BsoBI CYCGRG 4 cut(s) 28, 93, 110, 877
Bsp119I TTCGAA 2 cut(s) 248, 1248
Bsp143I GATC 4 cut(s) 484, 678, 919, 931
BspACI CCGC 3 cut(s) 135, 175, 1409
BspANI GGCC 2 cut(s) 553, 645
BspCNI CTCAG 3 cut(s) 561, 631, 1228
BspLI GGNNCC 1 cut(s) 972
BspMI ACCTGC 1 cut(s) 730
BspPI GGATC 3 cut(s) 673, 914, 926
BspQI GCTCTTC 1 cut(s) 759
BspT104I TTCGAA 2 cut(s) 248, 1248
BsrI ACTGG 2 cut(s) 578, 647
BssECI CCNNGG 3 cut(s) 99, 121, 923
BssMI GATC 4 cut(s) 484, 678, 919, 931
BssNI GRCGYC 1 cut(s) 217
BssSI CACGAG 2 cut(s) 357, 942
BssT1I CCWWGG 1 cut(s) 121
Bst2BI CACGAG 2 cut(s) 357, 942
Bst2UI CCWGG 4 cut(s) 72, 563, 1242, 1343
Bst4CI ACNGT 2 cut(s) 531, 1086
Bst6I CTCTTC 3 cut(s) 437, 759, 1269
BstACI GRCGYC 1 cut(s) 217
BstAPI GCANNNNNTGC 2 cut(s) 200, 752
BstBAI YACGTR 1 cut(s) 1301
BstBI TTCGAA 2 cut(s) 248, 1248
BstC8I GCNNGC 2 cut(s) 313, 471
BstDEI CTNAG 5 cut(s) 569, 618, 857, 893, 1236
BstDSI CCRYGG 2 cut(s) 99, 923
BstENI CCTNNNNNAGG 1 cut(s) 1239
BstF5I GGATG 8 cut(s) 196, 262, 459, 1039, 1172, 1417, 1438, 1660
BstH2I RGCGCY 1 cut(s) 1184
BstHHI GCGC 3 cut(s) 330, 1183, 1556
BstKTI GATC 4 cut(s) 487, 681, 922, 934
BstMAI GTCTC 3 cut(s) 98, 565, 1192
BstMBI GATC 4 cut(s) 484, 678, 919, 931
BstMWI GCNNNNNNNGC 8 cut(s) 166, 200, 312, 341, 384, 428, 752, 1138
BstNI CCWGG 4 cut(s) 72, 563, 1242, 1343
BstNSI RCATGY 3 cut(s) 315, 407, 828
BstSCI CCNGG 4 cut(s) 70, 561, 1240, 1341
BstSFI CTRYAG 1 cut(s) 1082
BstV1I GCAGC 5 cut(s) 153, 850, 1170, 1438, 1563
BstV2I GAAGAC 4 cut(s) 189, 708, 1257, 1431
BstX2I RGATCY 2 cut(s) 678, 931
BstYI RGATCY 2 cut(s) 678, 931
BsuI GTATCC 1 cut(s) 1617
BsuRI GGCC 2 cut(s) 553, 645
BtgI CCRYGG 2 cut(s) 99, 923
BtgZI GCGATG 2 cut(s) 321, 1611
BtsCI GGATG 8 cut(s) 196, 262, 459, 1039, 1172, 1417, 1438, 1660
BtsI GCAGTG 2 cut(s) 753, 1316
BtsIMutI CAGTG 2 cut(s) 753, 1316
BveI ACCTGC 1 cut(s) 730
Cac8I GCNNGC 2 cut(s) 313, 471
CaiI CAGNNNCTG 1 cut(s) 752
CfoI GCGC 3 cut(s) 330, 1183, 1556
Cfr13I GGNCC 2 cut(s) 644, 884
CsiI ACCWGGT 1 cut(s) 561
Csp6I GTAC 1 cut(s) 1108
CviAII CATG 7 cut(s) 312, 388, 404, 496, 825, 1484, 1498
CviQI GTAC 1 cut(s) 1108
DdeI CTNAG 5 cut(s) 569, 618, 857, 893, 1236
DpnI GATC 4 cut(s) 486, 680, 921, 933
DpnII GATC 4 cut(s) 484, 678, 919, 931
DraI TTTAAA 2 cut(s) 1051, 1261
Eam1104I CTCTTC 3 cut(s) 437, 759, 1269
EarI CTCTTC 3 cut(s) 437, 759, 1269
EciI GGCGGA 1 cut(s) 164
Eco130I CCWWGG 1 cut(s) 121
Eco47I GGWCC 1 cut(s) 884
Eco47III AGCGCT 1 cut(s) 1182
Eco57I CTGAAG 3 cut(s) 201, 1197, 1443
Eco88I CYCGRG 4 cut(s) 28, 93, 110, 877
EcoNI CCTNNNNNAGG 1 cut(s) 1239
EcoRI GAATTC 1 cut(s) 962
EcoRII CCWGG 4 cut(s) 70, 561, 1240, 1341
EcoT14I CCWWGG 1 cut(s) 121
EcoT22I ATGCAT 1 cut(s) 313
ErhI CCWWGG 1 cut(s) 121
FaeI CATG 7 cut(s) 315, 391, 407, 499, 828, 1487, 1501
FalI AAGNNNNNCTT 2 cut(s) 1170, 1202
FatI CATG 7 cut(s) 311, 387, 403, 495, 824, 1483, 1497
FauNDI CATATG 1 cut(s) 837
FblI GTMKAC 1 cut(s) 393
Fnu4HI GCNGC 5 cut(s) 167, 864, 1184, 1452, 1552
FokI GGATG 7 cut(s) 183, 269, 466, 1046, 1179, 1424, 1445
Fsp4HI GCNGC 5 cut(s) 167, 864, 1184, 1452, 1552
FspBI CTAG 2 cut(s) 42, 303
GlaI GCGC 3 cut(s) 329, 1182, 1555
GluI GCNGC 5 cut(s) 167, 864, 1184, 1452, 1552
GsaI CCCAGC 2 cut(s) 335, 1033
GsuI CTGGAG 1 cut(s) 1495
HaeII RGCGCY 1 cut(s) 1184
HaeIII GGCC 2 cut(s) 553, 645
HhaI GCGC 3 cut(s) 330, 1183, 1556
Hin1I GRCGYC 1 cut(s) 217
Hin1II CATG 7 cut(s) 315, 391, 407, 499, 828, 1487, 1501
Hin6I GCGC 3 cut(s) 328, 1181, 1554
HinP1I GCGC 3 cut(s) 328, 1181, 1554
HincII GTYRAC 3 cut(s) 287, 394, 1331
HindII GTYRAC 3 cut(s) 287, 394, 1331
HindIII AAGCTT 1 cut(s) 158
HphI GGTGA 4 cut(s) 472, 531, 1331, 1505
Hpy166II GTNNAC 5 cut(s) 64, 287, 394, 780, 1331
Hpy188I TCNGA 7 cut(s) 367, 621, 1177, 1291, 1308, 1423, 1611
Hpy188III TCNNGA 8 cut(s) 93, 901, 935, 952, 1235, 1271, 1512, 1637
Hpy8I GTNNAC 5 cut(s) 64, 287, 394, 780, 1331
Hpy99I CGWCG 2 cut(s) 219, 1643
HpyAV CCTTC 2 cut(s) 198, 244
HpyCH4III ACNGT 2 cut(s) 531, 1086
HpyCH4IV ACGT 4 cut(s) 149, 217, 1254, 1300
HpyF10VI GCNNNNNNNGC 8 cut(s) 166, 200, 312, 341, 384, 428, 752, 1138
HpyF3I CTNAG 5 cut(s) 569, 618, 857, 893, 1236
HpySE526I ACGT 4 cut(s) 149, 217, 1254, 1300
Hsp92I GRCGYC 1 cut(s) 217
Hsp92II CATG 7 cut(s) 315, 391, 407, 499, 828, 1487, 1501
HspAI GCGC 3 cut(s) 328, 1181, 1554
Kzo9I GATC 4 cut(s) 484, 678, 919, 931
LguI GCTCTTC 1 cut(s) 759
Lsp1109I GCAGC 5 cut(s) 153, 850, 1170, 1438, 1563
LweI GCATC 3 cut(s) 298, 1303, 1565
MabI ACCWGGT 1 cut(s) 561
MaeI CTAG 2 cut(s) 42, 303
MaeII ACGT 4 cut(s) 149, 217, 1254, 1300
MaeIII GTNAC 3 cut(s) 32, 580, 1493
MalI GATC 4 cut(s) 486, 680, 921, 933
MboI GATC 4 cut(s) 484, 678, 919, 931
MfeI CAATTG 1 cut(s) 657
MflI RGATCY 2 cut(s) 678, 931
MluCI AATT 7 cut(s) 243, 408, 657, 962, 980, 1153, 1192
MlyI GAGTC 2 cut(s) 100, 1194
MmeI TCCRAC 3 cut(s) 747, 823, 1653
Mph1103I ATGCAT 1 cut(s) 313
MseI TTAA 9 cut(s) 239, 261, 692, 842, 906, 983, 1050, 1260, 1404
MslI CAYNNNNRTG 2 cut(s) 225, 1488
MspR9I CCNGG 4 cut(s) 72, 563, 1242, 1343
MunI CAATTG 1 cut(s) 657
MvaI CCWGG 4 cut(s) 72, 563, 1242, 1343
MwoI GCNNNNNNNGC 8 cut(s) 166, 200, 312, 341, 384, 428, 752, 1138
NdeI CATATG 1 cut(s) 837
NdeII GATC 4 cut(s) 484, 678, 919, 931
NlaIII CATG 7 cut(s) 315, 391, 407, 499, 828, 1487, 1501
NlaIV GGNNCC 1 cut(s) 972
NmuCI GTSAC 1 cut(s) 1493
NsiI ATGCAT 1 cut(s) 313
NspI RCATGY 3 cut(s) 315, 407, 828
NspV TTCGAA 2 cut(s) 248, 1248
PaeI GCATGC 1 cut(s) 315
PciSI GCTCTTC 1 cut(s) 759
PcsI WCGNNNNNNNCGW 2 cut(s) 1638, 1644
PflMI CCANNNNNTGG 2 cut(s) 729, 958
PkrI GCNGC 5 cut(s) 168, 865, 1185, 1453, 1553
PleI GAGTC 2 cut(s) 100, 1194
PpsI GAGTC 2 cut(s) 100, 1194
Ppu21I YACGTR 1 cut(s) 1301
PsiI TTATAA 1 cut(s) 1158
Psp6I CCWGG 4 cut(s) 70, 561, 1240, 1341
PspFI CCCAGC 2 cut(s) 331, 1029
PspGI CCWGG 4 cut(s) 70, 561, 1240, 1341
PspN4I GGNNCC 1 cut(s) 972
PspPI GGNCC 2 cut(s) 644, 884
PstNI CAGNNNCTG 1 cut(s) 752
PsuI RGATCY 2 cut(s) 678, 931
RsaI GTAC 1 cut(s) 1109
RsaNI GTAC 1 cut(s) 1108
RseI CAYNNNNRTG 2 cut(s) 225, 1488
SalI GTCGAC 1 cut(s) 392
SapI GCTCTTC 1 cut(s) 759
SaqAI TTAA 9 cut(s) 239, 261, 692, 842, 906, 983, 1050, 1260, 1404
SatI GCNGC 5 cut(s) 167, 864, 1184, 1452, 1552
Sau3AI GATC 4 cut(s) 484, 678, 919, 931
Sau96I GGNCC 2 cut(s) 644, 884
SchI GAGTC 2 cut(s) 100, 1194
ScrFI CCNGG 4 cut(s) 72, 563, 1242, 1343
SexAI ACCWGGT 1 cut(s) 561
SfaNI GCATC 3 cut(s) 298, 1303, 1565
SfcI CTRYAG 1 cut(s) 1082
SfuI TTCGAA 2 cut(s) 248, 1248
SinI GGWCC 1 cut(s) 884
SmiMI CAYNNNNRTG 2 cut(s) 225, 1488
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
SphI GCATGC 1 cut(s) 315
Sse9I AATT 7 cut(s) 243, 408, 657, 962, 980, 1153, 1192
SsiI CCGC 3 cut(s) 135, 175, 1409
SspMI CTAG 2 cut(s) 42, 303
StyD4I CCNGG 4 cut(s) 70, 561, 1240, 1341
StyI CCWWGG 1 cut(s) 121
TaaI ACNGT 2 cut(s) 531, 1086
TaiI ACGT 4 cut(s) 152, 220, 1257, 1303
TaqI TCGA 5 cut(s) 248, 393, 810, 1248, 1638
TasI AATT 7 cut(s) 243, 408, 657, 962, 980, 1153, 1192
TatI WGTACW 1 cut(s) 1107
Tru1I TTAA 9 cut(s) 239, 261, 692, 842, 906, 983, 1050, 1260, 1404
Tru9I TTAA 9 cut(s) 239, 261, 692, 842, 906, 983, 1050, 1260, 1404
TscAI CASTG 2 cut(s) 753, 1323
TseFI GTSAC 1 cut(s) 1493
TseI GCWGC 5 cut(s) 166, 863, 1183, 1451, 1551
Tsp45I GTSAC 1 cut(s) 1493
TspDTI ATGAA 3 cut(s) 519, 1376, 1452
TspGWI ACGGA 4 cut(s) 33, 940, 1193, 1348
TspRI CASTG 2 cut(s) 753, 1323
Van91I CCANNNNNTGG 2 cut(s) 729, 958
VpaK11BI GGWCC 1 cut(s) 884
XagI CCTNNNNNAGG 1 cut(s) 1239
XapI RAATTY 2 cut(s) 243, 962
XceI RCATGY 3 cut(s) 315, 407, 828
XmiI GTMKAC 1 cut(s) 393
XspI CTAG 2 cut(s) 42, 303
ZraI GACGTC 1 cut(s) 218
Zsp2I ATGCAT 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.