Rorug01G0454700

General transcription factor 3C polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0006712
Physical Location & Seq
Reverse (-)
54944054 .. 54945757
1704 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0454700.1

Sequence Viewer

Length: 987 bp
ATGGGGGAGGCTTCGCTAGAGCAGATGATAGAGATCACAACAAGGCATTCATGTTTCCTCAATAACCCATCACTGGATGTCCAAAAGCATGTTGACCATCTCAGAAACATTCAGGACAGTGTTCTCAAGGCTGCCTTCAACTTACAAACAGAACATAACAAAGAGATTAAGGCCTACGTGACTGGCCAAAATGGAAATGAAGGCACATTAGCACAAACATGTGCCTCAGGGAACTACAAGTTTGTAAACATAGCTTTCCTTTCATCATTTGGCAATGGCCGAACCCCTACCATAAACCTTGCGGGTCACTGTGACCCGTACAGCAATGGATGCACCAAGTTCAGCTCGCAAATAAAGTCGTGCCAAGCCAAAGGCATCAAGGTCATACTATCTATTGGAGGTGGTGCTGGAGGCTACTCTCTAGCTTCACCCAGAGATGCCCGCCAATTTGGTGCTTACTTGTGGAACAACTTCTTGGGAGGACGCTCCTCTTCAAGGCCGTTGGGAGATGCTGTTTTGGATGGAGTTGACTTCGACATTGAAGGAGGGAATGACCAGTACTATGATGACCTTGCTAGATACCTTTCGGCGCAGAGCAAGAAGGGCAGCAAGAAAGTTTACTTGACTGCCGCTCCACAGTGTCCCTTTCCTGATGCTTATGTTGGAAATGCACTTGAGACAGGCCTATTTGACTATGTTTGGGTTCAATTTTACAACAACCCTCCTTGTCAGTACACTTCTGGTGATGTCACCAATCTCGAAAACGCTTGGAAGCAATGGACTTCAGCCATTCCTGCACAAAAGATCTTTTTAGGACTCCCTGCTGCACCTCAAGCTGCTGGTAGTGGATTCATTCCTGCTGCTGCTCTCACTTCAAAAGTCCTTCCGGGTATCAAAAATTCGGCTAAATATGGTGGTGTCATGCTTTGGTCCAAGTATTATGATGATCTTGATGGATACAGCTCCTCCATCAAGAATCATGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tau95

Protein Analysis

328

Amino Acids

35.49

Weight (kDa)

7.56

Isoelectric Point (pI)

38.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 59 - 276 1.2e-22 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 632
AciI CCGC 3 cut(s) 302, 442, 630
AcoI YGGCCR 2 cut(s) 184, 277
AcsI RAATTY 1 cut(s) 898
AcuI CTGAAG 1 cut(s) 768
AfaI GTAC 3 cut(s) 320, 560, 734
AfiI CCNNNNNNNGG 2 cut(s) 73, 495
AflIII ACRYGT 1 cut(s) 218
AgsI TTSAA 5 cut(s) 139, 495, 542, 707, 876
AjuI GAANNNNNNNTTGG 2 cut(s) 458, 490
AluBI AGCT 5 cut(s) 254, 345, 425, 836, 963
AluI AGCT 5 cut(s) 254, 345, 425, 836, 963
Alw26I GTCTC 1 cut(s) 671
AoxI GGCC 5 cut(s) 171, 184, 277, 497, 682
ApeKI GCWGC 6 cut(s) 131, 606, 824, 836, 860, 863
ApoI RAATTY 1 cut(s) 898
Asp700I GAANNNNTTC 1 cut(s) 470
AspLEI GCGC 1 cut(s) 592
AspS9I GGNCC 1 cut(s) 930
AsuC2I CCSGG 1 cut(s) 888
AsuHPI GGTGA 3 cut(s) 420, 742, 755
AvaII GGWCC 1 cut(s) 930
AxyI CCTNAGG 1 cut(s) 226
BalI TGGCCA 1 cut(s) 186
BbvI GCAGC 6 cut(s) 118, 618, 811, 823, 847, 850
BccI CCATC 5 cut(s) 76, 105, 515, 947, 977
BceAI ACGGC 1 cut(s) 484
BciVI GTATCC 1 cut(s) 950
BcnI CCSGG 1 cut(s) 888
BcoDI GTCTC 1 cut(s) 671
BfaI CTAG 4 cut(s) 17, 422, 576, 985
BfuI GTATCC 1 cut(s) 950
BglII AGATCT 1 cut(s) 804
BisI GCNGC 7 cut(s) 132, 607, 630, 825, 837, 861, 864
BlsI GCNGC 7 cut(s) 133, 608, 631, 826, 838, 862, 865
BmcAI AGTACT 1 cut(s) 560
Bme1390I CCNGG 1 cut(s) 888
Bme18I GGWCC 1 cut(s) 930
BmgT120I GGNCC 1 cut(s) 930
BmrFI CCNGG 1 cut(s) 888
BmsI GCATC 5 cut(s) 320, 384, 427, 499, 643
BpmI CTGGAG 1 cut(s) 429
BpuEI CTTGAG 3 cut(s) 110, 695, 816
BpuMI CCSGG 1 cut(s) 888
BsaAI YACGTR 1 cut(s) 178
BsaBI GATNNNNATC 1 cut(s) 32
BsaXI ACNNNNNCTCC 6 cut(s) 498, 528, 616, 646, 950, 980
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 495
Bse1I ACTGG 3 cut(s) 78, 187, 556
Bse21I CCTNAGG 1 cut(s) 226
Bse3DI GCAATG 3 cut(s) 280, 331, 782
Bse8I GATNNNNATC 1 cut(s) 32
BseGI GGATG 3 cut(s) 82, 335, 526
BseJI GATNNNNATC 1 cut(s) 32
BseLI CCNNNNNNNGG 2 cut(s) 73, 495
BseMI GCAATG 3 cut(s) 280, 331, 782
BseMII CTCAG 2 cut(s) 115, 240
BseNI ACTGG 3 cut(s) 78, 187, 556
BseRI GAGGAG 2 cut(s) 478, 955
BseXI GCAGC 6 cut(s) 118, 618, 811, 823, 847, 850
BsgI GTGCAG 2 cut(s) 780, 810
BshFI GGCC 5 cut(s) 173, 186, 279, 499, 684
BsiSI CCGG 1 cut(s) 887
BslFI GGGAC 1 cut(s) 627
BslI CCNNNNNNNGG 2 cut(s) 73, 495
BsmAI GTCTC 1 cut(s) 671
BsmFI GGGAC 1 cut(s) 627
BsmI GAATGC 1 cut(s) 46
BsnI GGCC 5 cut(s) 173, 186, 279, 499, 684
Bsp143I GATC 3 cut(s) 33, 804, 946
BspACI CCGC 3 cut(s) 302, 442, 630
BspANI GGCC 5 cut(s) 173, 186, 279, 499, 684
BspCNI CTCAG 2 cut(s) 114, 239
BsrBI CCGCTC 1 cut(s) 632
BsrDI GCAATG 3 cut(s) 280, 331, 782
BsrI ACTGG 3 cut(s) 78, 187, 556
BssMI GATC 3 cut(s) 33, 804, 946
Bst4CI ACNGT 3 cut(s) 119, 311, 639
Bst6I CTCTTC 1 cut(s) 496
BstAPI GCANNNNNTGC 1 cut(s) 330
BstBAI YACGTR 1 cut(s) 178
BstC8I GCNNGC 2 cut(s) 347, 442
BstDEI CTNAG 2 cut(s) 101, 226
BstENI CCTNNNNNAGG 1 cut(s) 493
BstF5I GGATG 3 cut(s) 82, 335, 526
BstHHI GCGC 1 cut(s) 592
BstKTI GATC 3 cut(s) 36, 807, 949
BstMAI GTCTC 1 cut(s) 671
BstMBI GATC 3 cut(s) 33, 804, 946
BstMWI GCNNNNNNNGC 4 cut(s) 330, 603, 794, 833
BstNSI RCATGY 2 cut(s) 92, 222
BstSCI CCNGG 1 cut(s) 886
BstV1I GCAGC 6 cut(s) 118, 618, 811, 823, 847, 850
BstX2I RGATCY 1 cut(s) 804
BstYI RGATCY 1 cut(s) 804
Bsu36I CCTNAGG 1 cut(s) 226
BsuI GTATCC 1 cut(s) 950
BsuRI GGCC 5 cut(s) 173, 186, 279, 499, 684
BtsCI GGATG 3 cut(s) 82, 335, 526
BtsIMutI CAGTG 4 cut(s) 71, 124, 307, 644
Cac8I GCNNGC 2 cut(s) 347, 442
CfoI GCGC 1 cut(s) 592
Cfr13I GGNCC 1 cut(s) 930
CseI GACGC 1 cut(s) 492
Csp6I GTAC 3 cut(s) 319, 559, 733
CviAII CATG 5 cut(s) 51, 89, 219, 922, 980
CviQI GTAC 3 cut(s) 319, 559, 733
DdeI CTNAG 2 cut(s) 101, 226
DpnI GATC 3 cut(s) 35, 806, 948
DpnII GATC 3 cut(s) 33, 804, 946
EaeI YGGCCR 2 cut(s) 184, 277
Eam1104I CTCTTC 1 cut(s) 496
EarI CTCTTC 1 cut(s) 496
Eco147I AGGCCT 2 cut(s) 173, 684
Eco47I GGWCC 1 cut(s) 930
Eco57I CTGAAG 1 cut(s) 768
Eco81I CCTNAGG 1 cut(s) 226
EcoNI CCTNNNNNAGG 1 cut(s) 493
FaeI CATG 5 cut(s) 54, 92, 222, 925, 983
FalI AAGNNNNNCTT 2 cut(s) 119, 151
FaqI GGGAC 1 cut(s) 627
FatI CATG 5 cut(s) 50, 88, 218, 921, 979
FauI CCCGC 2 cut(s) 295, 449
Fnu4HI GCNGC 7 cut(s) 132, 607, 630, 825, 837, 861, 864
FokI GGATG 3 cut(s) 89, 342, 533
Fsp4HI GCNGC 7 cut(s) 132, 607, 630, 825, 837, 861, 864
FspBI CTAG 4 cut(s) 17, 422, 576, 985
GlaI GCGC 1 cut(s) 591
GluI GCNGC 7 cut(s) 132, 607, 630, 825, 837, 861, 864
GsuI CTGGAG 1 cut(s) 429
HaeIII GGCC 5 cut(s) 173, 186, 279, 499, 684
HapII CCGG 1 cut(s) 887
HgaI GACGC 1 cut(s) 492
HhaI GCGC 1 cut(s) 592
Hin1II CATG 5 cut(s) 54, 92, 222, 925, 983
Hin6I GCGC 1 cut(s) 590
HinP1I GCGC 1 cut(s) 590
HincII GTYRAC 2 cut(s) 94, 529
HindII GTYRAC 2 cut(s) 94, 529
HinfI GANTC 3 cut(s) 816, 849, 976
HpaII CCGG 1 cut(s) 887
HphI GGTGA 3 cut(s) 420, 742, 755
Hpy166II GTNNAC 5 cut(s) 94, 247, 529, 619, 735
Hpy188I TCNGA 1 cut(s) 104
Hpy188III TCNNGA 5 cut(s) 113, 650, 758, 950, 973
Hpy8I GTNNAC 5 cut(s) 94, 247, 529, 619, 735
HpyAV CCTTC 5 cut(s) 145, 194, 536, 595, 893
HpyCH4III ACNGT 3 cut(s) 119, 311, 639
HpyCH4IV ACGT 1 cut(s) 177
HpyCH4V TGCA 4 cut(s) 333, 671, 797, 827
HpyF10VI GCNNNNNNNGC 4 cut(s) 330, 603, 794, 833
HpyF3I CTNAG 2 cut(s) 101, 226
HpySE526I ACGT 1 cut(s) 177
Hsp92II CATG 5 cut(s) 54, 92, 222, 925, 983
HspAI GCGC 1 cut(s) 590
Kzo9I GATC 3 cut(s) 33, 804, 946
LmnI GCTCC 3 cut(s) 491, 637, 968
Lsp1109I GCAGC 6 cut(s) 118, 618, 811, 823, 847, 850
LweI GCATC 5 cut(s) 320, 384, 427, 499, 643
MaeI CTAG 4 cut(s) 17, 422, 576, 985
MaeII ACGT 1 cut(s) 177
MaeIII GTNAC 4 cut(s) 178, 305, 311, 748
MalI GATC 3 cut(s) 35, 806, 948
MbiI CCGCTC 1 cut(s) 632
MboI GATC 3 cut(s) 33, 804, 946
MboII GAAGA 1 cut(s) 483
MflI RGATCY 1 cut(s) 804
MlsI TGGCCA 1 cut(s) 186
MluCI AATT 3 cut(s) 446, 707, 898
MluNI TGGCCA 1 cut(s) 186
MlyI GAGTC 1 cut(s) 810
MmeI TCCRAC 1 cut(s) 643
Mox20I TGGCCA 1 cut(s) 186
MroXI GAANNNNTTC 1 cut(s) 470
MscI TGGCCA 1 cut(s) 186
MseI TTAA 1 cut(s) 168
MslI CAYNNNNRTG 1 cut(s) 217
Msp20I TGGCCA 1 cut(s) 186
MspI CCGG 1 cut(s) 887
MspR9I CCNGG 1 cut(s) 888
Mva1269I GAATGC 1 cut(s) 46
MwoI GCNNNNNNNGC 4 cut(s) 330, 603, 794, 833
NciI CCSGG 1 cut(s) 888
NdeII GATC 3 cut(s) 33, 804, 946
NlaIII CATG 5 cut(s) 54, 92, 222, 925, 983
NmuCI GTSAC 4 cut(s) 178, 305, 311, 748
NspI RCATGY 2 cut(s) 92, 222
PceI AGGCCT 2 cut(s) 173, 684
PciI ACATGT 1 cut(s) 218
PctI GAATGC 1 cut(s) 46
PdmI GAANNNNTTC 1 cut(s) 470
PfeI GAWTC 2 cut(s) 849, 976
PkrI GCNGC 7 cut(s) 133, 608, 631, 826, 838, 862, 865
PleI GAGTC 1 cut(s) 810
PpsI GAGTC 1 cut(s) 810
Ppu21I YACGTR 1 cut(s) 178
PscI ACATGT 1 cut(s) 218
PspPI GGNCC 1 cut(s) 930
PsuI RGATCY 1 cut(s) 804
RsaI GTAC 3 cut(s) 320, 560, 734
RsaNI GTAC 3 cut(s) 319, 559, 733
RseI CAYNNNNRTG 1 cut(s) 217
SaqAI TTAA 1 cut(s) 168
SatI GCNGC 7 cut(s) 132, 607, 630, 825, 837, 861, 864
Sau3AI GATC 3 cut(s) 33, 804, 946
Sau96I GGNCC 1 cut(s) 930
ScaI AGTACT 1 cut(s) 560
SchI GAGTC 1 cut(s) 810
ScrFI CCNGG 1 cut(s) 888
SfaNI GCATC 5 cut(s) 320, 384, 427, 499, 643
SinI GGWCC 1 cut(s) 930
SmiMI CAYNNNNRTG 1 cut(s) 217
SmlI CTYRAG 3 cut(s) 125, 674, 831
SmoI CTYRAG 3 cut(s) 125, 674, 831
Sse9I AATT 3 cut(s) 446, 707, 898
SseBI AGGCCT 2 cut(s) 173, 684
SsiI CCGC 3 cut(s) 302, 442, 630
SspMI CTAG 4 cut(s) 17, 422, 576, 985
StuI AGGCCT 2 cut(s) 173, 684
StyD4I CCNGG 1 cut(s) 886
TaaI ACNGT 3 cut(s) 119, 311, 639
TaiI ACGT 1 cut(s) 180
TaqI TCGA 2 cut(s) 534, 759
TasI AATT 3 cut(s) 446, 707, 898
TatI WGTACW 2 cut(s) 558, 732
TauI GCSGC 1 cut(s) 632
TfiI GAWTC 2 cut(s) 849, 976
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TscAI CASTG 4 cut(s) 78, 124, 314, 644
TseFI GTSAC 4 cut(s) 178, 305, 311, 748
TseI GCWGC 6 cut(s) 131, 606, 824, 836, 860, 863
Tsp45I GTSAC 4 cut(s) 178, 305, 311, 748
TspDTI ATGAA 4 cut(s) 39, 213, 252, 841
TspRI CASTG 4 cut(s) 78, 124, 314, 644
VpaK11BI GGWCC 1 cut(s) 930
XagI CCTNNNNNAGG 1 cut(s) 493
XapI RAATTY 1 cut(s) 898
XceI RCATGY 2 cut(s) 92, 222
XmnI GAANNNNTTC 1 cut(s) 470
XspI CTAG 4 cut(s) 17, 422, 576, 985
ZrmI AGTACT 1 cut(s) 560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.