Prupe.7G062100_v2.0.a1

General transcription factor 3C polypeptide

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Forward (+)
10104656 .. 10113040
8385 bp
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UTR
Exon/CDS
Intron
Prupe.7G062100.3

Sequence Viewer

Length: 1677 bp
ATGGGAGTCGTAAAAGATGGCAGCACCACCACCGGGTTTCTCCCTAGCAGTGAAGTTTTTGCCATCCACTATCCTGGTTATCCTTCATCCATGTCCCGTGCCATTGAGACACTTGGTGGGACCCAAGGAATTCGTAAGGCTCATAGTTCACAGTCAAACAGGCTGGAGCTTCATTTCCGGCACCAAGAACCATATTCACATCCTGCCTTTGGAGACCTTCGTCCTTGCAACAACTTGTTGCTTAAAATATCCAAAACCAAGTCTAATGCTGGACAAACTCAACCCCAAAGTGAATTACTTGCCAGCAAACAAGATGAAGTGCAGATACCTGAAAATGATCGAGTACATTTTGATATTGTTGCTCGTGTACCAGAGGCTTATCACTTTGATGGAATGGTTGACTACCAGCATGTTGTTCCTGTTCATGCTGATGTTGCACGGAAGAAAAAGAGAAATTGGATCGAAATTAAGGATCCACACTCTGATAAGGGTGGTCTTATGGATATTGATCAGGAGGATGCGATGATTCTGCTACCCCAACTCTTTGCACCTAAGGATGTGCCCGATAATTTAGTGTTGAAACCATCAGTGACATTGAGTGCAAAAAAGAATCAAGAAGAACCTGTGCAACACCAATGGGAGATGGATATGGAGCCAGTTCTTGCAATTGACTTTGGAATCAGTGAGATTCCTAAGAGAACGAATTGGGAGGAATATATACCCCAAGGCTCAGATCAGTGGGAGTCACAGATGGCCGTATCTCATCTGTTTGATGAGCGGCCTGTATGGCCAAAGGATTCGCTACTTGAACGCTTGGTTGATAAGGGCTTCAACTTTTCAGATCATCTACTCAGAAGGCTTCTTTCTAGAGTCGCATACTACTTTTCACGTGGACCATTTCTCAGGTTCTGGATAAAAAAAGGATATGATCCTCGCAAGGATCCTGAATCTCGAATATTTCAGAAAATTGATTTTCGAGTCAGACCACCATTACAGAGTTACTGTGATGCTAATTCAGCCAATCAACCAAAGCATAGGTGGGAGGATATTTGTGCATTTCGAGTGTTTCCTTACAAGTGCCATACAACATTGCAACTATTTGAACTTGGTGATGATTACATTCAAGAACAGATAAGAAAACCTCCAGCCCAGACAACTTGCTCTTCTGAGACAGGATGGTTTTCATATAACATGCTTGAAAACTTGAAAGATTGTGTTAAAGTGAGGTTCCTATCTGTATTCCCAGAACCTGGTGCAGAGCCCTTGCTAAAAGCTGCTACTGAAAGCTTCAAAAAGTCCAAGAAGATGAGTAGTAATGACAAATTAATGCGTGATGAAGTGGTACACCCACAGGCCAAAGCAGGATATGAAGATGTTGAGGAACCCAACAATGTTGAGGAAGAGGAGAAAGATGAAATTGGGGTTAATAATTGTGAAGAGGCATTAGATACAGATGATGGACTTGATGTGGCTGAGGATGGTGAAATTTCTCTACAGTCACATTCATATCTTAACATGGAGAATATCTCAAGAACCCATTTACAGGAGCTTTTTGGTAGTTTTCCATCTCCTGAAGCAGGGGGTGATAGAATACAAGCTGCATATACGAGTGATGAGGAATACCAGATTTATGAGCAAGATAGTGATGACAACTTCTCTGATGAAAATGATTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

559

Amino Acids

63.96

Weight (kDa)

4.99

Isoelectric Point (pI)

53.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 180
AccB7I CCANNNNNTGG 1 cut(s) 1250
AccBSI CCGCTC 1 cut(s) 778
AciI CCGC 1 cut(s) 778
AclWI GGATC 6 cut(s) 467, 467, 480, 923, 935, 948
AcoI YGGCCR 2 cut(s) 753, 788
AcsI RAATTY 2 cut(s) 129, 1485
AcuI CTGAAG 1 cut(s) 1593
AcvI CACGTG 1 cut(s) 890
AdeI CACNNNGTG 1 cut(s) 116
AfaI GTAC 3 cut(s) 345, 369, 1344
AfiI CCNNNNNNNGG 5 cut(s) 33, 209, 1250, 1543, 1577
AgsI TTSAA 8 cut(s) 580, 809, 832, 1103, 1124, 1199, 1207, 1291
AjnI CCWGG 2 cut(s) 73, 1249
AluBI AGCT 5 cut(s) 169, 1274, 1287, 1549, 1598
AluI AGCT 5 cut(s) 169, 1274, 1287, 1549, 1598
Alw26I GTCTC 3 cut(s) 101, 207, 1163
AlwI GGATC 6 cut(s) 467, 467, 480, 923, 935, 948
AlwNI CAGNNNCTG 2 cut(s) 909, 1250
AoxI GGCC 4 cut(s) 753, 779, 788, 1353
ApeKI GCWGC 3 cut(s) 21, 1274, 1598
ApoI RAATTY 2 cut(s) 129, 1485
AseI ATTAAT 1 cut(s) 1325
AspS9I GGNCC 2 cut(s) 120, 893
AsuC2I CCSGG 1 cut(s) 34
AsuHPI GGTGA 3 cut(s) 1121, 1493, 1595
AvaII GGWCC 2 cut(s) 120, 893
AxyI CCTNAGG 1 cut(s) 552
BaeGI GKGCMC 1 cut(s) 564
BalI TGGCCA 1 cut(s) 790
BamHI GGATCC 2 cut(s) 472, 940
BanI GGYRCC 1 cut(s) 180
BanII GRGCYC 1 cut(s) 1263
BarI GAAGNNNNNNTAC 2 cut(s) 309, 341
BauI CACGAG 1 cut(s) 363
BbrPI CACGTG 1 cut(s) 890
BbvCI CCTCAGC 1 cut(s) 1473
BbvI GCAGC 3 cut(s) 33, 1261, 1585
BceAI ACGGC 1 cut(s) 740
BcgI CGANNNNNNTGC 2 cut(s) 511, 545
BciT130I CCWGG 2 cut(s) 75, 1251
BclI TGATCA 1 cut(s) 508
BcnI CCSGG 1 cut(s) 34
BcoDI GTCTC 3 cut(s) 101, 207, 1163
BfaI CTAG 2 cut(s) 45, 867
BfmI CTRYAG 1 cut(s) 1493
BglI GCCNNNNNGGC 1 cut(s) 787
BisI GCNGC 4 cut(s) 22, 779, 1275, 1599
BlsI GCNGC 4 cut(s) 23, 780, 1276, 1600
Bme1390I CCNGG 3 cut(s) 34, 75, 1251
Bme18I GGWCC 2 cut(s) 120, 893
BmgT120I GGNCC 2 cut(s) 120, 893
BmiI GGNNCC 8 cut(s) 121, 122, 182, 474, 654, 942, 1229, 1383
BmrFI CCNGG 3 cut(s) 34, 75, 1251
BmsI GCATC 2 cut(s) 508, 997
BoxI GACNNNNGTC 1 cut(s) 219
BplI GAGNNNNNCTC 2 cut(s) 1511, 1543
BpmI CTGGAG 2 cut(s) 185, 1128
Bpu10I CCTNAGC 1 cut(s) 1473
BpuEI CTTGAG 1 cut(s) 1513
BpuMI CCSGG 1 cut(s) 34
BsaAI YACGTR 1 cut(s) 890
BsaBI GATNNNNATC 1 cut(s) 507
BsaI GGTCTC 1 cut(s) 207
BsaJI CCNNGG 2 cut(s) 124, 724
Bsc4I CCNNNNNNNGG 5 cut(s) 33, 209, 1250, 1543, 1577
Bse1I ACTGG 1 cut(s) 656
Bse21I CCTNAGG 1 cut(s) 552
Bse3DI GCAATG 1 cut(s) 1088
Bse8I GATNNNNATC 1 cut(s) 507
BseBI CCWGG 2 cut(s) 75, 1251
BseDI CCNNGG 2 cut(s) 124, 724
BseGI GGATG 7 cut(s) 63, 86, 199, 523, 562, 1181, 1483
BseJI GATNNNNATC 1 cut(s) 507
BseLI CCNNNNNNNGG 5 cut(s) 33, 209, 1250, 1543, 1577
BseMI GCAATG 1 cut(s) 1088
BseMII CTCAG 5 cut(s) 744, 865, 916, 1158, 1464
BseNI ACTGG 1 cut(s) 656
BseRI GAGGAG 1 cut(s) 1418
BseSI GKGCMC 1 cut(s) 564
BseXI GCAGC 3 cut(s) 33, 1261, 1585
BsgI GTGCAG 2 cut(s) 341, 1275
BshFI GGCC 4 cut(s) 755, 781, 790, 1355
BshNI GGYRCC 1 cut(s) 180
BsiSI CCGG 2 cut(s) 33, 178
BslFI GGGAC 2 cut(s) 79, 133
BslI CCNNNNNNNGG 5 cut(s) 33, 209, 1250, 1543, 1577
BsmAI GTCTC 3 cut(s) 101, 207, 1163
BsmFI GGGAC 2 cut(s) 79, 133
BsnI GGCC 4 cut(s) 755, 781, 790, 1355
Bso31I GGTCTC 1 cut(s) 207
Bsp1286I GDGCHC 2 cut(s) 564, 1263
Bsp143I GATC 8 cut(s) 337, 459, 472, 508, 733, 841, 928, 940
BspACI CCGC 1 cut(s) 778
BspANI GGCC 4 cut(s) 755, 781, 790, 1355
BspCNI CTCAG 5 cut(s) 743, 864, 915, 1159, 1465
BspLI GGNNCC 8 cut(s) 121, 122, 182, 474, 654, 942, 1229, 1383
BspPI GGATC 6 cut(s) 467, 467, 480, 923, 935, 948
BspQI GCTCTTC 1 cut(s) 1168
BspT107I GGYRCC 1 cut(s) 180
BspTNI GGTCTC 1 cut(s) 207
BsrBI CCGCTC 1 cut(s) 778
BsrDI GCAATG 1 cut(s) 1088
BsrI ACTGG 1 cut(s) 656
BssECI CCNNGG 2 cut(s) 124, 724
BssMI GATC 8 cut(s) 337, 459, 472, 508, 733, 841, 928, 940
BssSI CACGAG 1 cut(s) 363
BssT1I CCWWGG 2 cut(s) 124, 724
Bst2BI CACGAG 1 cut(s) 363
Bst2UI CCWGG 2 cut(s) 75, 1251
Bst4CI ACNGT 3 cut(s) 153, 1004, 1497
Bst6I CTCTTC 3 cut(s) 1168, 1395, 1431
BstBAI YACGTR 1 cut(s) 890
BstC8I GCNNGC 1 cut(s) 304
BstDEI CTNAG 7 cut(s) 552, 693, 730, 851, 902, 1167, 1473
BstENI CCTNNNNNAGG 1 cut(s) 1575
BstF5I GGATG 7 cut(s) 63, 86, 199, 523, 562, 1181, 1483
BstKTI GATC 8 cut(s) 340, 462, 475, 511, 736, 844, 931, 943
BstMAI GTCTC 3 cut(s) 101, 207, 1163
BstMBI GATC 8 cut(s) 337, 459, 472, 508, 733, 841, 928, 940
BstMWI GCNNNNNNNGC 3 cut(s) 434, 787, 1016
BstNI CCWGG 2 cut(s) 75, 1251
BstNSI RCATGY 2 cut(s) 413, 1195
BstPAI GACNNNNGTC 1 cut(s) 219
BstSCI CCNGG 3 cut(s) 32, 73, 1249
BstSFI CTRYAG 1 cut(s) 1493
BstSLI GKGCMC 1 cut(s) 564
BstV1I GCAGC 3 cut(s) 33, 1261, 1585
BstX2I RGATCY 2 cut(s) 472, 940
BstXI CCANNNNNNTGG 1 cut(s) 74
BstYI RGATCY 2 cut(s) 472, 940
Bsu36I CCTNAGG 1 cut(s) 552
BsuRI GGCC 4 cut(s) 755, 781, 790, 1355
BtgZI GCGATG 1 cut(s) 536
BtsCI GGATG 7 cut(s) 63, 86, 199, 523, 562, 1181, 1483
BtsI GCAGTG 1 cut(s) 55
BtsIMutI CAGTG 4 cut(s) 55, 594, 688, 743
Cac8I GCNNGC 1 cut(s) 304
CaiI CAGNNNCTG 2 cut(s) 909, 1250
Cfr13I GGNCC 2 cut(s) 120, 893
CsiI ACCWGGT 1 cut(s) 1249
Csp6I GTAC 3 cut(s) 344, 368, 1343
CviAII CATG 5 cut(s) 91, 410, 425, 1192, 1516
CviQI GTAC 3 cut(s) 344, 368, 1343
DdeI CTNAG 7 cut(s) 552, 693, 730, 851, 902, 1167, 1473
DpnI GATC 8 cut(s) 339, 461, 474, 510, 735, 843, 930, 942
DpnII GATC 8 cut(s) 337, 459, 472, 508, 733, 841, 928, 940
DraIII CACNNNGTG 1 cut(s) 116
EaeI YGGCCR 2 cut(s) 753, 788
Eam1104I CTCTTC 3 cut(s) 1168, 1395, 1431
EarI CTCTTC 3 cut(s) 1168, 1395, 1431
Eco130I CCWWGG 2 cut(s) 124, 724
Eco24I GRGCYC 1 cut(s) 1263
Eco31I GGTCTC 1 cut(s) 207
Eco47I GGWCC 2 cut(s) 120, 893
Eco57I CTGAAG 1 cut(s) 1593
Eco72I CACGTG 1 cut(s) 890
Eco81I CCTNAGG 1 cut(s) 552
EcoNI CCTNNNNNAGG 1 cut(s) 1575
EcoO109I RGGNCCY 1 cut(s) 120
EcoRI GAATTC 1 cut(s) 129
EcoRII CCWGG 2 cut(s) 73, 1249
EcoT14I CCWWGG 2 cut(s) 124, 724
EcoT38I GRGCYC 1 cut(s) 1263
ErhI CCWWGG 2 cut(s) 124, 724
FaeI CATG 5 cut(s) 94, 413, 428, 1195, 1519
FaqI GGGAC 2 cut(s) 79, 133
FatI CATG 5 cut(s) 90, 409, 424, 1191, 1515
FbaI TGATCA 1 cut(s) 508
Fnu4HI GCNGC 4 cut(s) 22, 779, 1275, 1599
FokI GGATG 7 cut(s) 50, 73, 186, 530, 569, 1188, 1490
FriOI GRGCYC 1 cut(s) 1263
Fsp4HI GCNGC 4 cut(s) 22, 779, 1275, 1599
FspBI CTAG 2 cut(s) 45, 867
GluI GCNGC 4 cut(s) 22, 779, 1275, 1599
GsuI CTGGAG 2 cut(s) 185, 1128
HaeIII GGCC 4 cut(s) 755, 781, 790, 1355
HapII CCGG 2 cut(s) 33, 178
Hin1II CATG 5 cut(s) 94, 413, 428, 1195, 1519
HincII GTYRAC 1 cut(s) 400
HindII GTYRAC 1 cut(s) 400
HindIII AAGCTT 1 cut(s) 1285
HpaII CCGG 2 cut(s) 33, 178
HphI GGTGA 3 cut(s) 1121, 1493, 1595
Hpy166II GTNNAC 5 cut(s) 149, 368, 400, 893, 1345
Hpy188I TCNGA 8 cut(s) 484, 733, 841, 854, 963, 983, 1168, 1660
Hpy188III TCNNGA 9 cut(s) 512, 614, 867, 910, 944, 951, 1124, 1530, 1571
Hpy8I GTNNAC 5 cut(s) 149, 368, 400, 893, 1345
HpyAV CCTTC 3 cut(s) 93, 227, 849
HpyCH4III ACNGT 3 cut(s) 153, 1004, 1497
HpyCH4IV ACGT 1 cut(s) 889
HpyF10VI GCNNNNNNNGC 3 cut(s) 434, 787, 1016
HpyF3I CTNAG 7 cut(s) 552, 693, 730, 851, 902, 1167, 1473
HpySE526I ACGT 1 cut(s) 889
Hsp92II CATG 5 cut(s) 94, 413, 428, 1195, 1519
KflI GGGWCCC 1 cut(s) 120
Ksp22I TGATCA 1 cut(s) 508
Kzo9I GATC 8 cut(s) 337, 459, 472, 508, 733, 841, 928, 940
LguI GCTCTTC 1 cut(s) 1168
LmnI GCTCC 3 cut(s) 166, 652, 1546
Lsp1109I GCAGC 3 cut(s) 33, 1261, 1585
LweI GCATC 2 cut(s) 508, 997
MabI ACCWGGT 1 cut(s) 1249
MaeI CTAG 2 cut(s) 45, 867
MaeII ACGT 1 cut(s) 889
MaeIII GTNAC 4 cut(s) 589, 744, 998, 1497
MalI GATC 8 cut(s) 339, 461, 474, 510, 735, 843, 930, 942
MbiI CCGCTC 1 cut(s) 778
MboI GATC 8 cut(s) 337, 459, 472, 508, 733, 841, 928, 940
MboII GAAGA 7 cut(s) 454, 629, 1155, 1315, 1382, 1412, 1448
MfeI CAATTG 1 cut(s) 666
MflI RGATCY 2 cut(s) 472, 940
MhlI GDGCHC 2 cut(s) 564, 1263
MlsI TGGCCA 1 cut(s) 790
MluNI TGGCCA 1 cut(s) 790
MlyI GAGTC 4 cut(s) 15, 752, 879, 987
Mox20I TGGCCA 1 cut(s) 790
MscI TGGCCA 1 cut(s) 790
MseI TTAA 6 cut(s) 243, 468, 1218, 1325, 1425, 1512
MslI CAYNNNNRTG 2 cut(s) 387, 429
Msp20I TGGCCA 1 cut(s) 790
MspI CCGG 2 cut(s) 33, 178
MspR9I CCNGG 3 cut(s) 34, 75, 1251
MunI CAATTG 1 cut(s) 666
MvaI CCWGG 2 cut(s) 75, 1251
MwoI GCNNNNNNNGC 3 cut(s) 434, 787, 1016
NciI CCSGG 1 cut(s) 34
NdeII GATC 8 cut(s) 337, 459, 472, 508, 733, 841, 928, 940
NlaIII CATG 5 cut(s) 94, 413, 428, 1195, 1519
NlaIV GGNNCC 8 cut(s) 121, 122, 182, 474, 654, 942, 1229, 1383
NmuCI GTSAC 3 cut(s) 589, 744, 1497
NspI RCATGY 2 cut(s) 413, 1195
PciSI GCTCTTC 1 cut(s) 1168
PfeI GAWTC 6 cut(s) 526, 610, 678, 688, 797, 947
PflMI CCANNNNNTGG 1 cut(s) 1250
PkrI GCNGC 4 cut(s) 23, 780, 1276, 1600
PleI GAGTC 4 cut(s) 14, 751, 878, 986
PmaCI CACGTG 1 cut(s) 890
PmlI CACGTG 1 cut(s) 890
PpsI GAGTC 4 cut(s) 14, 751, 878, 986
Ppu21I YACGTR 1 cut(s) 890
PpuMI RGGWCCY 1 cut(s) 120
PshAI GACNNNNGTC 1 cut(s) 219
PshBI ATTAAT 1 cut(s) 1325
Psp5II RGGWCCY 1 cut(s) 120
Psp6I CCWGG 2 cut(s) 73, 1249
PspCI CACGTG 1 cut(s) 890
PspGI CCWGG 2 cut(s) 73, 1249
PspN4I GGNNCC 8 cut(s) 121, 122, 182, 474, 654, 942, 1229, 1383
PspPI GGNCC 2 cut(s) 120, 893
PspPPI RGGWCCY 1 cut(s) 120
PstNI CAGNNNCTG 2 cut(s) 909, 1250
PsuI RGATCY 2 cut(s) 472, 940
RsaI GTAC 3 cut(s) 345, 369, 1344
RsaNI GTAC 3 cut(s) 344, 368, 1343
RseI CAYNNNNRTG 2 cut(s) 387, 429
SapI GCTCTTC 1 cut(s) 1168
SaqAI TTAA 6 cut(s) 243, 468, 1218, 1325, 1425, 1512
SatI GCNGC 4 cut(s) 22, 779, 1275, 1599
Sau3AI GATC 8 cut(s) 337, 459, 472, 508, 733, 841, 928, 940
Sau96I GGNCC 2 cut(s) 120, 893
SchI GAGTC 4 cut(s) 15, 752, 879, 987
ScrFI CCNGG 3 cut(s) 34, 75, 1251
SduI GDGCHC 2 cut(s) 564, 1263
SexAI ACCWGGT 1 cut(s) 1249
SfaNI GCATC 2 cut(s) 508, 997
SfcI CTRYAG 1 cut(s) 1493
SfiI GGCCNNNNNGGCC 1 cut(s) 787
SinI GGWCC 2 cut(s) 120, 893
SmiMI CAYNNNNRTG 2 cut(s) 387, 429
SmlI CTYRAG 1 cut(s) 1528
SmoI CTYRAG 1 cut(s) 1528
SsiI CCGC 1 cut(s) 778
SspI AATATT 1 cut(s) 957
SspMI CTAG 2 cut(s) 45, 867
StyD4I CCNGG 3 cut(s) 32, 73, 1249
StyI CCWWGG 2 cut(s) 124, 724
TaaI ACNGT 3 cut(s) 153, 1004, 1497
TaiI ACGT 1 cut(s) 892
TaqI TCGA 5 cut(s) 340, 462, 952, 976, 1060
TatI WGTACW 1 cut(s) 343
TauI GCSGC 1 cut(s) 781
TfiI GAWTC 6 cut(s) 526, 610, 678, 688, 797, 947
Tru1I TTAA 6 cut(s) 243, 468, 1218, 1325, 1425, 1512
Tru9I TTAA 6 cut(s) 243, 468, 1218, 1325, 1425, 1512
TscAI CASTG 4 cut(s) 55, 594, 688, 743
TseFI GTSAC 3 cut(s) 589, 744, 1497
TseI GCWGC 3 cut(s) 21, 1274, 1598
Tsp45I GTSAC 3 cut(s) 589, 744, 1497
TspGWI ACGGA 1 cut(s) 454
TspRI CASTG 4 cut(s) 55, 594, 688, 743
Van91I CCANNNNNTGG 1 cut(s) 1250
VpaK11BI GGWCC 2 cut(s) 120, 893
VspI ATTAAT 1 cut(s) 1325
XagI CCTNNNNNAGG 1 cut(s) 1575
XapI RAATTY 2 cut(s) 129, 1485
XbaI TCTAGA 1 cut(s) 866
XceI RCATGY 2 cut(s) 413, 1195
XcmI CCANNNNNNNNNTGG 1 cut(s) 1035
XspI CTAG 2 cut(s) 45, 867
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.