Rh2DG002900

General transcription factor 3C polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0006712
Physical Location & Seq
Reverse (-)
191422 .. 195026
3605 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG002900.1

Sequence Viewer

Length: 921 bp
ATGGCCGTTTCTAGCCTGTTTGATGAGAGGCCTGTATGGCCAAAGGATTCAGTAACTGAACGCTTGCTTGATAAGGGCTTCAGTTTTTCAGATCATATGCTGAGAAGGCTTCTTTCTAGAGTTGCATACTACTTTTCTCGTGGACCATTTCTCAGGTTCTGGATAAAAAAAGGATTTGATCCTCGGAAAGATCCTGATTCTCGCATATATCAGAAAATTGATTTTCGAGTAAAACCACCATTACAAGGTTATTGTGAGGCTAATTCAGCCAATCAACTAAAGCATAAATGGGGGGATTTATGTGCATTTCGAGTGTTTCCTTACAAGTGCCATACAACATTGCAACTCTTTGAACTTGATGATGATTACATTCAAGAACAGATAAGAAAGGCTCCAGCTCAGACAACGTGCTCTCCGGAGACGGGATGGTTTTCATATAACTTGCTTGAGAACTTGAAACATCGCGTTCAGGTCAGGTTCCTATCCGTATACCCAAGACCGGGTGCAGTGCACTTGCTCAAAGCTGCTACTGAAAGCTTTAAAAAGTCAAAGAGGATATGCAATAAAGACAACTTAGTGCGTGATGAAATTGTCCAGCAACAAGCCAATGCAGGTGATGTAGATGCGGAGGAACCCAACAATGTTGAGGATGATGAGGAAGATGATATTGAGGTTGATAATGGTGAAGAAACATTAGATACATATGATGGACATGATCTGGCTGAGGATGGTGAAATTTCTTTGCAGCCACATTCATATCTTAACATGGAGAACATGTCAAGAACTCATTTACAGGAGCTTTTTGGTAGTTTTCCATCCCCTGAAGCAGGGGGCAATAGAATACAAGATGCATATACCAGTGATGAAGAATACCAGATTTATGAGCAAGATAGTGATGGCAACTTCTCTGATGAAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tau95

Protein Analysis

306

Amino Acids

35.49

Weight (kDa)

4.8

Isoelectric Point (pI)

47.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tau95 PF09734 3 - 76 9.4e-23 RNA polymerase III transcription factor (TF)IIIC subunit HTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 602
Acc36I ACCTGC 1 cut(s) 602
AccI GTMKAC 1 cut(s) 489
AccII CGCG 1 cut(s) 465
AccIII TCCGGA 1 cut(s) 415
AciI CCGC 1 cut(s) 626
AclWI GGATC 2 cut(s) 173, 185
AcoI YGGCCR 2 cut(s) 3, 38
AcsI RAATTY 1 cut(s) 735
AcuI CTGAAG 2 cut(s) 64, 843
AfiI CCNNNNNNNGG 5 cut(s) 245, 422, 499, 500, 827
AflIII ACRYGT 1 cut(s) 774
AgsI TTSAA 3 cut(s) 353, 374, 457
AluBI AGCT 4 cut(s) 398, 524, 537, 799
AluI AGCT 4 cut(s) 398, 524, 537, 799
Alw21I GWGCWC 2 cut(s) 413, 513
Alw26I GTCTC 1 cut(s) 413
Alw44I GTGCAC 1 cut(s) 509
AlwI GGATC 2 cut(s) 173, 185
AlwNI CAGNNNCTG 2 cut(s) 56, 159
Aor13HI TCCGGA 1 cut(s) 415
AoxI GGCC 3 cut(s) 3, 29, 38
ApaLI GTGCAC 1 cut(s) 509
ApeKI GCWGC 2 cut(s) 524, 745
ApoI RAATTY 1 cut(s) 735
AspS9I GGNCC 1 cut(s) 143
AsuC2I CCSGG 1 cut(s) 501
AsuHPI GGTGA 3 cut(s) 626, 695, 743
AvaII GGWCC 1 cut(s) 143
BaeGI GKGCMC 1 cut(s) 513
BalI TGGCCA 1 cut(s) 40
BauI CACGAG 1 cut(s) 138
Bbv12I GWGCWC 2 cut(s) 413, 513
BbvCI CCTCAGC 1 cut(s) 723
BbvI GCAGC 2 cut(s) 511, 757
BccI CCATC 5 cut(s) 420, 701, 722, 823, 890
BcnI CCSGG 1 cut(s) 501
BcoDI GTCTC 1 cut(s) 413
BfaI CTAG 2 cut(s) 12, 117
BfuAI ACCTGC 1 cut(s) 602
BglI GCCNNNNNGGC 1 cut(s) 37
BisI GCNGC 2 cut(s) 525, 746
BlsI GCNGC 2 cut(s) 526, 747
Bme1390I CCNGG 1 cut(s) 501
Bme18I GGWCC 1 cut(s) 143
BmgT120I GGNCC 1 cut(s) 143
BmiI GGNNCC 3 cut(s) 393, 479, 633
BmrFI CCNGG 1 cut(s) 501
BmsI GCATC 2 cut(s) 613, 838
BpmI CTGGAG 1 cut(s) 378
Bpu10I CCTNAGC 1 cut(s) 723
BpuEI CTTGAG 1 cut(s) 467
BpuMI CCSGG 1 cut(s) 501
BsaJI CCNNGG 1 cut(s) 182
BsaWI WCCGGW 1 cut(s) 415
BsaXI ACNNNNNCTCC 4 cut(s) 397, 427, 761, 791
Bsc4I CCNNNNNNNGG 5 cut(s) 245, 422, 499, 500, 827
Bse1I ACTGG 1 cut(s) 858
Bse3DI GCAATG 1 cut(s) 338
BseAI TCCGGA 1 cut(s) 415
BseDI CCNNGG 1 cut(s) 182
BseGI GGATG 4 cut(s) 431, 655, 733, 815
BseLI CCNNNNNNNGG 5 cut(s) 245, 422, 499, 500, 827
BseMI GCAATG 1 cut(s) 338
BseMII CTCAG 4 cut(s) 92, 166, 413, 714
BseNI ACTGG 1 cut(s) 858
BseSI GKGCMC 1 cut(s) 513
BseXI GCAGC 2 cut(s) 511, 757
BsgI GTGCAG 1 cut(s) 525
Bsh1236I CGCG 1 cut(s) 465
BshFI GGCC 3 cut(s) 5, 31, 40
BsiHKAI GWGCWC 2 cut(s) 413, 513
BsiSI CCGG 2 cut(s) 416, 500
BslI CCNNNNNNNGG 5 cut(s) 245, 422, 499, 500, 827
BsmAI GTCTC 1 cut(s) 413
BsmBI CGTCTC 1 cut(s) 413
BsnI GGCC 3 cut(s) 5, 31, 40
Bsp1286I GDGCHC 2 cut(s) 413, 513
Bsp13I TCCGGA 1 cut(s) 415
Bsp143I GATC 4 cut(s) 91, 178, 190, 715
BspACI CCGC 1 cut(s) 626
BspANI GGCC 3 cut(s) 5, 31, 40
BspCNI CTCAG 4 cut(s) 93, 165, 412, 715
BspEI TCCGGA 1 cut(s) 415
BspFNI CGCG 1 cut(s) 465
BspLI GGNNCC 3 cut(s) 393, 479, 633
BspMI ACCTGC 1 cut(s) 602
BspPI GGATC 2 cut(s) 173, 185
BsrDI GCAATG 1 cut(s) 338
BsrI ACTGG 1 cut(s) 858
BssECI CCNNGG 1 cut(s) 182
BssMI GATC 4 cut(s) 91, 178, 190, 715
BssNAI GTATAC 1 cut(s) 490
BssSI CACGAG 1 cut(s) 138
Bst1107I GTATAC 1 cut(s) 490
Bst2BI CACGAG 1 cut(s) 138
BstC8I GCNNGC 1 cut(s) 65
BstDEI CTNAG 5 cut(s) 101, 152, 399, 574, 723
BstENI CCTNNNNNAGG 1 cut(s) 825
BstF5I GGATG 4 cut(s) 431, 655, 733, 815
BstFNI CGCG 1 cut(s) 465
BstKTI GATC 4 cut(s) 94, 181, 193, 718
BstMAI GTCTC 1 cut(s) 413
BstMBI GATC 4 cut(s) 91, 178, 190, 715
BstMWI GCNNNNNNNGC 3 cut(s) 37, 106, 266
BstNSI RCATGY 1 cut(s) 778
BstSCI CCNGG 1 cut(s) 499
BstSLI GKGCMC 1 cut(s) 513
BstUI CGCG 1 cut(s) 465
BstV1I GCAGC 2 cut(s) 511, 757
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
BstZ17I GTATAC 1 cut(s) 490
BsuRI GGCC 3 cut(s) 5, 31, 40
BtgZI GCGATG 1 cut(s) 446
BtsCI GGATG 4 cut(s) 431, 655, 733, 815
BtsI GCAGTG 1 cut(s) 513
BtsIMutI CAGTG 2 cut(s) 513, 865
BveI ACCTGC 1 cut(s) 602
Cac8I GCNNGC 1 cut(s) 65
CaiI CAGNNNCTG 2 cut(s) 56, 159
Cfr13I GGNCC 1 cut(s) 143
CviAII CATG 3 cut(s) 713, 766, 775
DdeI CTNAG 5 cut(s) 101, 152, 399, 574, 723
DpnI GATC 4 cut(s) 93, 180, 192, 717
DpnII GATC 4 cut(s) 91, 178, 190, 715
DraI TTTAAA 1 cut(s) 541
EaeI YGGCCR 2 cut(s) 3, 38
Eco147I AGGCCT 1 cut(s) 31
Eco47I GGWCC 1 cut(s) 143
Eco57I CTGAAG 2 cut(s) 64, 843
EcoNI CCTNNNNNAGG 1 cut(s) 825
EcoT22I ATGCAT 1 cut(s) 853
Esp3I CGTCTC 1 cut(s) 413
FaeI CATG 3 cut(s) 716, 769, 778
FatI CATG 3 cut(s) 712, 765, 774
FauNDI CATATG 2 cut(s) 96, 703
FblI GTMKAC 1 cut(s) 489
Fnu4HI GCNGC 2 cut(s) 525, 746
FokI GGATG 4 cut(s) 438, 662, 740, 802
Fsp4HI GCNGC 2 cut(s) 525, 746
FspBI CTAG 2 cut(s) 12, 117
GluI GCNGC 2 cut(s) 525, 746
GsuI CTGGAG 1 cut(s) 378
HaeIII GGCC 3 cut(s) 5, 31, 40
HapII CCGG 2 cut(s) 416, 500
Hin1II CATG 3 cut(s) 716, 769, 778
HindIII AAGCTT 1 cut(s) 535
HinfI GANTC 2 cut(s) 47, 197
HpaII CCGG 2 cut(s) 416, 500
HphI GGTGA 3 cut(s) 626, 695, 743
Hpy166II GTNNAC 3 cut(s) 143, 490, 511
Hpy188I TCNGA 5 cut(s) 91, 186, 213, 402, 910
Hpy188III TCNNGA 6 cut(s) 117, 160, 194, 374, 416, 780
Hpy8I GTNNAC 3 cut(s) 143, 490, 511
HpyAV CCTTC 1 cut(s) 99
HpyCH4IV ACGT 1 cut(s) 407
HpyCH4V TGCA 9 cut(s) 125, 305, 343, 506, 511, 561, 611, 745, 851
HpyF10VI GCNNNNNNNGC 3 cut(s) 37, 106, 266
HpyF3I CTNAG 5 cut(s) 101, 152, 399, 574, 723
HpySE526I ACGT 1 cut(s) 407
Hsp92II CATG 3 cut(s) 716, 769, 778
Kpn2I TCCGGA 1 cut(s) 415
Kzo9I GATC 4 cut(s) 91, 178, 190, 715
LmnI GCTCC 2 cut(s) 397, 796
Lsp1109I GCAGC 2 cut(s) 511, 757
LweI GCATC 2 cut(s) 613, 838
MaeI CTAG 2 cut(s) 12, 117
MaeII ACGT 1 cut(s) 407
MaeIII GTNAC 1 cut(s) 52
MalI GATC 4 cut(s) 93, 180, 192, 717
MboI GATC 4 cut(s) 91, 178, 190, 715
MboII GAAGA 3 cut(s) 671, 698, 878
MflI RGATCY 1 cut(s) 190
MhlI GDGCHC 2 cut(s) 413, 513
MlsI TGGCCA 1 cut(s) 40
MluCI AATT 4 cut(s) 216, 262, 588, 735
MluNI TGGCCA 1 cut(s) 40
MnlI CCTC 9 cut(s) 21, 192, 250, 546, 622, 640, 649, 664, 718
Mox20I TGGCCA 1 cut(s) 40
Mph1103I ATGCAT 1 cut(s) 853
MroI TCCGGA 1 cut(s) 415
MscI TGGCCA 1 cut(s) 40
MseI TTAA 2 cut(s) 540, 762
Msp20I TGGCCA 1 cut(s) 40
MspI CCGG 2 cut(s) 416, 500
MspR9I CCNGG 1 cut(s) 501
MvnI CGCG 1 cut(s) 465
MwoI GCNNNNNNNGC 3 cut(s) 37, 106, 266
NciI CCSGG 1 cut(s) 501
NdeI CATATG 2 cut(s) 96, 703
NdeII GATC 4 cut(s) 91, 178, 190, 715
NlaIII CATG 3 cut(s) 716, 769, 778
NlaIV GGNNCC 3 cut(s) 393, 479, 633
NsiI ATGCAT 1 cut(s) 853
NspI RCATGY 1 cut(s) 778
PaqCI CACCTGC 1 cut(s) 602
PceI AGGCCT 1 cut(s) 31
PciI ACATGT 1 cut(s) 774
PfeI GAWTC 2 cut(s) 47, 197
PkrI GCNGC 2 cut(s) 526, 747
PscI ACATGT 1 cut(s) 774
PspN4I GGNNCC 3 cut(s) 393, 479, 633
PspPI GGNCC 1 cut(s) 143
PstNI CAGNNNCTG 2 cut(s) 56, 159
PsuI RGATCY 1 cut(s) 190
SaqAI TTAA 2 cut(s) 540, 762
SatI GCNGC 2 cut(s) 525, 746
Sau3AI GATC 4 cut(s) 91, 178, 190, 715
Sau96I GGNCC 1 cut(s) 143
ScrFI CCNGG 1 cut(s) 501
SduI GDGCHC 2 cut(s) 413, 513
SfaNI GCATC 2 cut(s) 613, 838
SfiI GGCCNNNNNGGCC 1 cut(s) 37
SinI GGWCC 1 cut(s) 143
SmlI CTYRAG 1 cut(s) 446
SmoI CTYRAG 1 cut(s) 446
Sse9I AATT 4 cut(s) 216, 262, 588, 735
SseBI AGGCCT 1 cut(s) 31
SsiI CCGC 1 cut(s) 626
SspMI CTAG 2 cut(s) 12, 117
StuI AGGCCT 1 cut(s) 31
StyD4I CCNGG 1 cut(s) 499
TaiI ACGT 1 cut(s) 410
TaqI TCGA 2 cut(s) 226, 310
TasI AATT 4 cut(s) 216, 262, 588, 735
TfiI GAWTC 2 cut(s) 47, 197
Tru1I TTAA 2 cut(s) 540, 762
Tru9I TTAA 2 cut(s) 540, 762
TscAI CASTG 2 cut(s) 513, 865
TseI GCWGC 2 cut(s) 524, 745
TspDTI ATGAA 4 cut(s) 423, 600, 744, 879
TspGWI ACGGA 1 cut(s) 475
TspRI CASTG 2 cut(s) 513, 865
VneI GTGCAC 1 cut(s) 509
VpaK11BI GGWCC 1 cut(s) 143
XagI CCTNNNNNAGG 1 cut(s) 825
XapI RAATTY 1 cut(s) 735
XbaI TCTAGA 1 cut(s) 116
XceI RCATGY 1 cut(s) 778
XmiI GTMKAC 1 cut(s) 489
XspI CTAG 2 cut(s) 12, 117
Zsp2I ATGCAT 1 cut(s) 853
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.