Rh2BG002400

General transcription factor 3C polypeptide

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Reverse (-)
236053 .. 242869
6817 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG002400.1

Sequence Viewer

Length: 1455 bp
ATGGGAGTCGTAAAAGATGGGACGATATCTGGGTTTCTTCCTAGCAGCCAAGTTTTTGGTGTCCACTATCCTGGTTATCCTTCCTCCATCTCTCGAGCCATCGACACTCTCGGCGGCACCCAAGCAATCCATAAGGCTCACAGCTCACACTCCAACAACAACAACAACAACAGGTTGGAGCTCCATTTCCGCCATGATGACCCCTATTCGCATCCTGCATTTGGAGACCTTCGTCCCTGCAAAAGTTTTCTGCTTAAAATATCTAAAACTAAGTCTGCTGGTGGACAAAACGATCAAGTTTCCGCACATAACTTGGATACTTCTGTACAGTTAACTCAACCTGAAAGTGACTTACTTGATGGCAAACAACCTGAAACTGATCAAGTAACCGTTTGCGCTGATATTGTTGCTCGTGTCCCACAGGCTTATCACTTTGATGGAATGGTAGACTACCAGCATGTCATTGCTGTTCATGCTGATGTTGCACGCAAGAGAAAGAGAAACTGGGTCGAGACAGAGGAGCCGCACTTTGACAGAGGTGGTCTTATGGATATTGATCAGGAGGATGTGATGATTCTATTGCCCCAACTTTTTGCACCCAAAGATGTTCCGGATAATTTAGTGTTGAAACCATCAGGGACATTGAGTGTAAAAAAGAATCAAGAAGAACCTGTGCAGCACCAACCGGAGATGGATATGGAGCCAGTTCTTGCAATTGACTTTGGAATCACTGATATCCTAATGATTCCTAAGAGAACAAACTGGGAGGAATATATACCTCAAGATTCAGATCAGTGGGAGTCACAGATGGCCGTTTCTAGCCTGTTTGATGAGAGGCCTGTATGGCCAAAGGATTCAGTAACTGAACGCTTGCTTGATAAGGGCTTCAGTTTTTCAGATCATATGCTGAGAAGGCTTCTTTCTAGAGTTGCATACTACTTTTCTCGTGGACCATTTCTCAGGTTCTGGATAAAAAAAGGATTTGATCCTCGGAAAGATCCTGATTCTCGCATATATCAGAAAATTGATTTTCGAGTAAAACCACCATTACAAGGTTATTGTGAGGCTAATTCAGCCAATCAACTAAAGCATAAATGGGGGGATTTATGTGCATTTCGAGTGTTTCCTTACAAGTGCCATACAACATTGCAACTCTTTGAACTTGATGATGATTACATTCAAGAACAGATAAGAAAGGCTCCAGCTCAGACAACGTGCTCTCCGGAGACGGGATGGTTTTCATATAACTTGCTTGAGAACTTGAAACATCGCGTTCAGGTGAGGTTCCTATCCGTATACCCAAGACCGGGTGCAGAGCACTTGCTCAAAGCTGCTACTGAAAGCTTTAAAAAGTCAAAGAGGATATGCAATAAAGACAACTTAGTGCGTGATGAAATTGTCCAGCAACAAGCCAATGCAGGTACAAAAGGAAAACTTCACTTGTTGCAAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

484

Amino Acids

55.34

Weight (kDa)

6.68

Isoelectric Point (pI)

40.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tau95_N PF17682 20 - 153 2.9e-26 Tau95 Triple barrel domain
Tau95 PF09734 192 - 345 7.2e-27 RNA polymerase III transcription factor (TF)IIIC subunit HTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1409
AccB1I GGYRCC 1 cut(s) 116
AccI GTMKAC 2 cut(s) 447, 1296
AccII CGCG 1 cut(s) 1272
AccIII TCCGGA 2 cut(s) 610, 1222
AciI CCGC 4 cut(s) 114, 190, 303, 524
AclWI GGATC 2 cut(s) 980, 992
AcoI YGGCCR 2 cut(s) 810, 845
AcuI CTGAAG 1 cut(s) 871
AfaI GTAC 2 cut(s) 327, 1423
AfiI CCNNNNNNNGG 5 cut(s) 221, 1052, 1229, 1306, 1307
AgsI TTSAA 4 cut(s) 628, 1160, 1181, 1264
AjnI CCWGG 1 cut(s) 70
AluBI AGCT 5 cut(s) 144, 181, 1205, 1331, 1344
AluI AGCT 5 cut(s) 144, 181, 1205, 1331, 1344
Alw21I GWGCWC 3 cut(s) 183, 1220, 1320
Alw26I GTCTC 3 cut(s) 219, 506, 1220
AlwI GGATC 2 cut(s) 980, 992
AlwNI CAGNNNCTG 2 cut(s) 863, 966
Ama87I CYCGRG 1 cut(s) 93
Aor13HI TCCGGA 2 cut(s) 610, 1222
AoxI GGCC 3 cut(s) 810, 836, 845
ApeKI GCWGC 3 cut(s) 45, 676, 1331
AspLEI GCGC 1 cut(s) 398
AspS9I GGNCC 1 cut(s) 950
AsuC2I CCSGG 1 cut(s) 1308
AsuHPI GGTGA 1 cut(s) 1291
AvaI CYCGRG 1 cut(s) 93
AvaII GGWCC 1 cut(s) 950
BaeI ACNNNNGTAYC 2 cut(s) 309, 342
BalI TGGCCA 1 cut(s) 847
BanI GGYRCC 1 cut(s) 116
BanII GRGCYC 1 cut(s) 183
BauI CACGAG 2 cut(s) 411, 945
Bbv12I GWGCWC 3 cut(s) 183, 1220, 1320
BbvI GCAGC 3 cut(s) 57, 688, 1318
BccI CCATC 9 cut(s) 11, 95, 107, 353, 431, 640, 685, 802, 1227
BceAI ACGGC 1 cut(s) 797
BciT130I CCWGG 1 cut(s) 72
BciVI GTATCC 1 cut(s) 310
BclI TGATCA 2 cut(s) 379, 556
BcnI CCSGG 1 cut(s) 1308
BcoDI GTCTC 3 cut(s) 219, 506, 1220
BfaI CTAG 3 cut(s) 42, 819, 924
BfuAI ACCTGC 1 cut(s) 1409
BfuI GTATCC 1 cut(s) 310
BglI GCCNNNNNGGC 1 cut(s) 844
BisI GCNGC 5 cut(s) 46, 115, 524, 677, 1332
BlsI GCNGC 5 cut(s) 47, 116, 525, 678, 1333
Bme1390I CCNGG 2 cut(s) 72, 1308
Bme18I GGWCC 1 cut(s) 950
BmeT110I CYCGRG 1 cut(s) 93
BmgT120I GGNCC 1 cut(s) 950
BmiI GGNNCC 5 cut(s) 118, 522, 702, 1200, 1286
BmrFI CCNGG 2 cut(s) 72, 1308
BmrI ACTGGG 2 cut(s) 514, 772
BmsI GCATC 1 cut(s) 220
BmuI ACTGGG 2 cut(s) 514, 772
BoxI GACNNNNGTC 1 cut(s) 231
BpmI CTGGAG 1 cut(s) 1185
BpuEI CTTGAG 2 cut(s) 765, 1274
BpuMI CCSGG 1 cut(s) 1308
BsaBI GATNNNNATC 2 cut(s) 555, 789
BsaI GGTCTC 1 cut(s) 219
BsaJI CCNNGG 1 cut(s) 989
BsaWI WCCGGW 3 cut(s) 610, 685, 1222
BsaXI ACNNNNNCTCC 2 cut(s) 1204, 1234
Bsc4I CCNNNNNNNGG 5 cut(s) 221, 1052, 1229, 1306, 1307
Bse1I ACTGG 3 cut(s) 509, 704, 767
Bse3DI GCAATG 2 cut(s) 462, 1145
Bse8I GATNNNNATC 2 cut(s) 555, 789
BseAI TCCGGA 2 cut(s) 610, 1222
BseBI CCWGG 1 cut(s) 72
BseDI CCNNGG 1 cut(s) 989
BseGI GGATG 3 cut(s) 211, 571, 1238
BseJI GATNNNNATC 2 cut(s) 555, 789
BseLI CCNNNNNNNGG 5 cut(s) 221, 1052, 1229, 1306, 1307
BseMI GCAATG 2 cut(s) 462, 1145
BseMII CTCAG 3 cut(s) 899, 973, 1220
BseNI ACTGG 3 cut(s) 509, 704, 767
BseRI GAGGAG 1 cut(s) 533
BseXI GCAGC 3 cut(s) 57, 688, 1318
BsgI GTGCAG 2 cut(s) 695, 1332
Bsh1236I CGCG 1 cut(s) 1272
BshFI GGCC 3 cut(s) 812, 838, 847
BshNI GGYRCC 1 cut(s) 116
BsiHKAI GWGCWC 3 cut(s) 183, 1220, 1320
BsiHKCI CYCGRG 1 cut(s) 93
BsiSI CCGG 4 cut(s) 611, 686, 1223, 1307
BslFI GGGAC 4 cut(s) 34, 219, 401, 652
BslI CCNNNNNNNGG 5 cut(s) 221, 1052, 1229, 1306, 1307
BsmAI GTCTC 3 cut(s) 219, 506, 1220
BsmBI CGTCTC 1 cut(s) 1220
BsmFI GGGAC 4 cut(s) 34, 219, 401, 652
BsnI GGCC 3 cut(s) 812, 838, 847
Bso31I GGTCTC 1 cut(s) 219
BsoBI CYCGRG 1 cut(s) 93
Bsp1286I GDGCHC 3 cut(s) 183, 1220, 1320
Bsp13I TCCGGA 2 cut(s) 610, 1222
Bsp1407I TGTACA 1 cut(s) 325
Bsp143I GATC 7 cut(s) 292, 379, 556, 790, 898, 985, 997
BspACI CCGC 4 cut(s) 114, 190, 303, 524
BspANI GGCC 3 cut(s) 812, 838, 847
BspCNI CTCAG 3 cut(s) 900, 972, 1219
BspEI TCCGGA 2 cut(s) 610, 1222
BspFNI CGCG 1 cut(s) 1272
BspLI GGNNCC 5 cut(s) 118, 522, 702, 1200, 1286
BspMI ACCTGC 1 cut(s) 1409
BspPI GGATC 2 cut(s) 980, 992
BspT107I GGYRCC 1 cut(s) 116
BspTNI GGTCTC 1 cut(s) 219
BsrDI GCAATG 2 cut(s) 462, 1145
BsrGI TGTACA 1 cut(s) 325
BsrI ACTGG 3 cut(s) 509, 704, 767
BssECI CCNNGG 1 cut(s) 989
BssMI GATC 7 cut(s) 292, 379, 556, 790, 898, 985, 997
BssNAI GTATAC 1 cut(s) 1297
BssSI CACGAG 2 cut(s) 411, 945
Bst1107I GTATAC 1 cut(s) 1297
Bst2BI CACGAG 2 cut(s) 411, 945
Bst2UI CCWGG 1 cut(s) 72
Bst4CI ACNGT 2 cut(s) 330, 391
BstAUI TGTACA 1 cut(s) 325
BstC8I GCNNGC 2 cut(s) 487, 872
BstDEI CTNAG 6 cut(s) 270, 750, 908, 959, 1206, 1381
BstF5I GGATG 3 cut(s) 211, 571, 1238
BstFNI CGCG 1 cut(s) 1272
BstHHI GCGC 1 cut(s) 398
BstKTI GATC 7 cut(s) 295, 382, 559, 793, 901, 988, 1000
BstMAI GTCTC 3 cut(s) 219, 506, 1220
BstMBI GATC 7 cut(s) 292, 379, 556, 790, 898, 985, 997
BstMWI GCNNNNNNNGC 5 cut(s) 473, 482, 844, 913, 1073
BstNI CCWGG 1 cut(s) 72
BstNSI RCATGY 1 cut(s) 461
BstPAI GACNNNNGTC 1 cut(s) 231
BstSCI CCNGG 2 cut(s) 70, 1306
BstUI CGCG 1 cut(s) 1272
BstV1I GCAGC 3 cut(s) 57, 688, 1318
BstX2I RGATCY 1 cut(s) 997
BstXI CCANNNNNNTGG 2 cut(s) 56, 71
BstYI RGATCY 1 cut(s) 997
BstZ17I GTATAC 1 cut(s) 1297
BsuI GTATCC 1 cut(s) 310
BsuRI GGCC 3 cut(s) 812, 838, 847
BtgZI GCGATG 1 cut(s) 1253
BtsCI GGATG 3 cut(s) 211, 571, 1238
BtsIMutI CAGTG 2 cut(s) 729, 800
BveI ACCTGC 1 cut(s) 1409
Cac8I GCNNGC 2 cut(s) 487, 872
CaiI CAGNNNCTG 2 cut(s) 863, 966
CfoI GCGC 1 cut(s) 398
Cfr13I GGNCC 1 cut(s) 950
Csp6I GTAC 2 cut(s) 326, 1422
CviAII CATG 3 cut(s) 194, 458, 473
CviQI GTAC 2 cut(s) 326, 1422
DdeI CTNAG 6 cut(s) 270, 750, 908, 959, 1206, 1381
DpnI GATC 7 cut(s) 294, 381, 558, 792, 900, 987, 999
DpnII GATC 7 cut(s) 292, 379, 556, 790, 898, 985, 997
DraI TTTAAA 1 cut(s) 1348
EaeI YGGCCR 2 cut(s) 810, 845
EciI GGCGGA 1 cut(s) 179
Ecl136II GAGCTC 1 cut(s) 181
Eco147I AGGCCT 1 cut(s) 838
Eco24I GRGCYC 1 cut(s) 183
Eco31I GGTCTC 1 cut(s) 219
Eco32I GATATC 2 cut(s) 27, 736
Eco47I GGWCC 1 cut(s) 950
Eco53kI GAGCTC 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 871
Eco88I CYCGRG 1 cut(s) 93
EcoICRI GAGCTC 1 cut(s) 181
EcoRII CCWGG 1 cut(s) 70
EcoRV GATATC 2 cut(s) 27, 736
EcoT38I GRGCYC 1 cut(s) 183
Esp3I CGTCTC 1 cut(s) 1220
FaeI CATG 3 cut(s) 197, 461, 476
FalI AAGNNNNNCTT 2 cut(s) 1419, 1451
FaqI GGGAC 4 cut(s) 34, 219, 401, 652
FatI CATG 3 cut(s) 193, 457, 472
FauNDI CATATG 1 cut(s) 903
FbaI TGATCA 2 cut(s) 379, 556
FblI GTMKAC 2 cut(s) 447, 1296
Fnu4HI GCNGC 5 cut(s) 46, 115, 524, 677, 1332
FokI GGATG 3 cut(s) 198, 578, 1245
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 5 cut(s) 46, 115, 524, 677, 1332
FspBI CTAG 3 cut(s) 42, 819, 924
GlaI GCGC 1 cut(s) 397
GluI GCNGC 5 cut(s) 46, 115, 524, 677, 1332
GsuI CTGGAG 1 cut(s) 1185
HaeIII GGCC 3 cut(s) 812, 838, 847
HapII CCGG 4 cut(s) 611, 686, 1223, 1307
HhaI GCGC 1 cut(s) 398
Hin1II CATG 3 cut(s) 197, 461, 476
Hin6I GCGC 1 cut(s) 396
HinP1I GCGC 1 cut(s) 396
HincII GTYRAC 1 cut(s) 333
HindII GTYRAC 1 cut(s) 333
HindIII AAGCTT 1 cut(s) 1342
HinfI GANTC 9 cut(s) 6, 574, 658, 726, 745, 785, 800, 854, 1004
HpaI GTTAAC 1 cut(s) 333
HpaII CCGG 4 cut(s) 611, 686, 1223, 1307
HphI GGTGA 1 cut(s) 1291
Hpy166II GTNNAC 6 cut(s) 64, 284, 333, 448, 950, 1297
Hpy188I TCNGA 5 cut(s) 790, 898, 993, 1020, 1209
Hpy8I GTNNAC 6 cut(s) 64, 284, 333, 448, 950, 1297
HpyAV CCTTC 3 cut(s) 90, 239, 906
HpyCH4III ACNGT 2 cut(s) 330, 391
HpyCH4IV ACGT 1 cut(s) 1214
HpyF10VI GCNNNNNNNGC 5 cut(s) 473, 482, 844, 913, 1073
HpyF3I CTNAG 6 cut(s) 270, 750, 908, 959, 1206, 1381
HpySE526I ACGT 1 cut(s) 1214
Hsp92II CATG 3 cut(s) 197, 461, 476
HspAI GCGC 1 cut(s) 396
Kpn2I TCCGGA 2 cut(s) 610, 1222
Ksp22I TGATCA 2 cut(s) 379, 556
KspAI GTTAAC 1 cut(s) 333
Kzo9I GATC 7 cut(s) 292, 379, 556, 790, 898, 985, 997
LmnI GCTCC 5 cut(s) 178, 186, 520, 700, 1204
Lsp1109I GCAGC 3 cut(s) 57, 688, 1318
LweI GCATC 1 cut(s) 220
MaeI CTAG 3 cut(s) 42, 819, 924
MaeII ACGT 1 cut(s) 1214
MaeIII GTNAC 4 cut(s) 347, 385, 801, 859
MalI GATC 7 cut(s) 294, 381, 558, 792, 900, 987, 999
MboI GATC 7 cut(s) 292, 379, 556, 790, 898, 985, 997
MboII GAAGA 2 cut(s) 29, 677
MfeI CAATTG 1 cut(s) 714
MflI RGATCY 1 cut(s) 997
MhlI GDGCHC 3 cut(s) 183, 1220, 1320
MlsI TGGCCA 1 cut(s) 847
MluCI AATT 5 cut(s) 616, 714, 1023, 1069, 1395
MluNI TGGCCA 1 cut(s) 847
MlyI GAGTC 2 cut(s) 15, 809
MmeI TCCRAC 2 cut(s) 156, 177
Mox20I TGGCCA 1 cut(s) 847
MroI TCCGGA 2 cut(s) 610, 1222
MscI TGGCCA 1 cut(s) 847
MseI TTAA 3 cut(s) 255, 332, 1347
MslI CAYNNNNRTG 2 cut(s) 435, 477
Msp20I TGGCCA 1 cut(s) 847
MspI CCGG 4 cut(s) 611, 686, 1223, 1307
MspR9I CCNGG 2 cut(s) 72, 1308
MunI CAATTG 1 cut(s) 714
MvaI CCWGG 1 cut(s) 72
MvnI CGCG 1 cut(s) 1272
MwoI GCNNNNNNNGC 5 cut(s) 473, 482, 844, 913, 1073
NciI CCSGG 1 cut(s) 1308
NdeI CATATG 1 cut(s) 903
NdeII GATC 7 cut(s) 292, 379, 556, 790, 898, 985, 997
NlaIII CATG 3 cut(s) 197, 461, 476
NlaIV GGNNCC 5 cut(s) 118, 522, 702, 1200, 1286
NmeAIII GCCGAG 1 cut(s) 90
NmuCI GTSAC 2 cut(s) 347, 801
NspI RCATGY 1 cut(s) 461
PaeR7I CTCGAG 1 cut(s) 93
PceI AGGCCT 1 cut(s) 838
PfeI GAWTC 7 cut(s) 574, 658, 726, 745, 785, 854, 1004
PkrI GCNGC 5 cut(s) 47, 116, 525, 678, 1333
PleI GAGTC 2 cut(s) 14, 808
PpsI GAGTC 2 cut(s) 14, 808
PshAI GACNNNNGTC 1 cut(s) 231
Psp124BI GAGCTC 1 cut(s) 183
Psp6I CCWGG 1 cut(s) 70
PspGI CCWGG 1 cut(s) 70
PspN4I GGNNCC 5 cut(s) 118, 522, 702, 1200, 1286
PspPI GGNCC 1 cut(s) 950
PstNI CAGNNNCTG 2 cut(s) 863, 966
PsuI RGATCY 1 cut(s) 997
RsaI GTAC 2 cut(s) 327, 1423
RsaNI GTAC 2 cut(s) 326, 1422
RseI CAYNNNNRTG 2 cut(s) 435, 477
SacI GAGCTC 1 cut(s) 183
SaqAI TTAA 3 cut(s) 255, 332, 1347
SatI GCNGC 5 cut(s) 46, 115, 524, 677, 1332
Sau3AI GATC 7 cut(s) 292, 379, 556, 790, 898, 985, 997
Sau96I GGNCC 1 cut(s) 950
SchI GAGTC 2 cut(s) 15, 809
ScrFI CCNGG 2 cut(s) 72, 1308
SduI GDGCHC 3 cut(s) 183, 1220, 1320
SfaNI GCATC 1 cut(s) 220
SfiI GGCCNNNNNGGCC 1 cut(s) 844
Sfr274I CTCGAG 1 cut(s) 93
SinI GGWCC 1 cut(s) 950
SlaI CTCGAG 1 cut(s) 93
SmiMI CAYNNNNRTG 2 cut(s) 435, 477
SmlI CTYRAG 3 cut(s) 93, 780, 1253
SmoI CTYRAG 3 cut(s) 93, 780, 1253
Sse9I AATT 5 cut(s) 616, 714, 1023, 1069, 1395
SseBI AGGCCT 1 cut(s) 838
SsiI CCGC 4 cut(s) 114, 190, 303, 524
SspMI CTAG 3 cut(s) 42, 819, 924
SstI GAGCTC 1 cut(s) 183
StuI AGGCCT 1 cut(s) 838
StyD4I CCNGG 2 cut(s) 70, 1306
TaaI ACNGT 2 cut(s) 330, 391
TaiI ACGT 1 cut(s) 1217
TaqI TCGA 5 cut(s) 94, 102, 510, 1033, 1117
TasI AATT 5 cut(s) 616, 714, 1023, 1069, 1395
TatI WGTACW 1 cut(s) 325
TauI GCSGC 2 cut(s) 117, 526
TfiI GAWTC 7 cut(s) 574, 658, 726, 745, 785, 854, 1004
Tru1I TTAA 3 cut(s) 255, 332, 1347
Tru9I TTAA 3 cut(s) 255, 332, 1347
TscAI CASTG 2 cut(s) 736, 800
TseFI GTSAC 2 cut(s) 347, 801
TseI GCWGC 3 cut(s) 45, 676, 1331
Tsp45I GTSAC 2 cut(s) 347, 801
TspDTI ATGAA 3 cut(s) 461, 1230, 1407
TspGWI ACGGA 1 cut(s) 1282
TspRI CASTG 2 cut(s) 736, 800
VpaK11BI GGWCC 1 cut(s) 950
XbaI TCTAGA 1 cut(s) 923
XceI RCATGY 1 cut(s) 461
XhoI CTCGAG 1 cut(s) 93
XmiI GTMKAC 2 cut(s) 447, 1296
XspI CTAG 3 cut(s) 42, 819, 924
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.