General transcription factor 3C polypeptide
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G49410 AT3G49410 AT3G49410 AT3G49410 AT5G24450 AT5G24450 |
| fragaria_vesca | FvH4_1g00230 FvH4_4g37371 |
| malus_domestica | MD15G1143400.v1.1 |
| prunus_persica | Prupe.7G062100_v2.0.a1 Prupe.7G062100_v2.0.a1 Prupe.7G062100_v2.0.a1 Prupe.7G062100_v2.0.a1 Prupe.7G062100_v2.0.a1 Prupe.7G062100_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr2g0084521 RchiOBHm_Chr2g0084531 |
| rosa_laevigata | RLG00000015624 |
| rosa_multiflora | Rmu_sc0009647.1_g000003 |
| rosa_roxburghii | Rroxscaffold_2G00155990 |
| rosa_rugosa | Rorug01G0454700 |
| rosa_samantha | Rh2AG002800 Rh2BG002400 Rh2CG002900 Rh2DG002900 |
| rosa_wichuraiana | Rw2G000250 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1385 |
| Acc36I | ACCTGC | 1 cut(s) | 1385 |
| AccB1I | GGYRCC | 1 cut(s) | 116 |
| AccI | GTMKAC | 2 cut(s) | 423, 1272 |
| AccIII | TCCGGA | 2 cut(s) | 586, 1198 |
| AciI | CCGC | 4 cut(s) | 114, 187, 500, 1409 |
| AclWI | GGATC | 2 cut(s) | 956, 968 |
| AcoI | YGGCCR | 1 cut(s) | 821 |
| AcsI | RAATTY | 1 cut(s) | 1518 |
| AcuI | CTGAAG | 3 cut(s) | 847, 1335, 1626 |
| AcyI | GRCGYC | 1 cut(s) | 117 |
| AfaI | GTAC | 1 cut(s) | 333 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 218, 1028, 1205, 1282, 1283, 1610 |
| AflIII | ACRYGT | 1 cut(s) | 1557 |
| AgsI | TTSAA | 5 cut(s) | 604, 758, 1136, 1157, 1240 |
| AjnI | CCWGG | 2 cut(s) | 40, 70 |
| AluBI | AGCT | 5 cut(s) | 144, 178, 1181, 1307, 1582 |
| AluI | AGCT | 5 cut(s) | 144, 178, 1181, 1307, 1582 |
| Alw21I | GWGCWC | 3 cut(s) | 180, 1196, 1296 |
| Alw26I | GTCTC | 2 cut(s) | 482, 1196 |
| AlwI | GGATC | 2 cut(s) | 956, 968 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 839, 942 |
| Ama87I | CYCGRG | 1 cut(s) | 93 |
| Aor13HI | TCCGGA | 2 cut(s) | 586, 1198 |
| AoxI | GGCC | 2 cut(s) | 812, 821 |
| ApeKI | GCWGC | 4 cut(s) | 45, 652, 1307, 1528 |
| ApoI | RAATTY | 1 cut(s) | 1518 |
| AspLEI | GCGC | 3 cut(s) | 119, 313, 374 |
| AspS9I | GGNCC | 1 cut(s) | 926 |
| AsuC2I | CCSGG | 2 cut(s) | 482, 1284 |
| AsuHPI | GGTGA | 4 cut(s) | 1267, 1409, 1478, 1526 |
| AvaI | CYCGRG | 1 cut(s) | 93 |
| AvaII | GGWCC | 1 cut(s) | 926 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 315, 348 |
| BalI | TGGCCA | 1 cut(s) | 823 |
| BanI | GGYRCC | 1 cut(s) | 116 |
| BanII | GRGCYC | 1 cut(s) | 180 |
| BauI | CACGAG | 2 cut(s) | 387, 921 |
| Bbv12I | GWGCWC | 3 cut(s) | 180, 1196, 1296 |
| BbvCI | CCTCAGC | 1 cut(s) | 1506 |
| BbvI | GCAGC | 4 cut(s) | 57, 664, 1294, 1540 |
| BciT130I | CCWGG | 2 cut(s) | 42, 72 |
| BciVI | GTATCC | 1 cut(s) | 316 |
| BclI | TGATCA | 2 cut(s) | 355, 532 |
| BcnI | CCSGG | 2 cut(s) | 482, 1284 |
| BcoDI | GTCTC | 2 cut(s) | 482, 1196 |
| BfaI | CTAG | 2 cut(s) | 795, 900 |
| BfoI | RGCGCY | 1 cut(s) | 120 |
| BfuAI | ACCTGC | 1 cut(s) | 1385 |
| BfuI | GTATCC | 1 cut(s) | 316 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 820 |
| BisI | GCNGC | 6 cut(s) | 46, 115, 500, 653, 1308, 1529 |
| BlsI | GCNGC | 6 cut(s) | 47, 116, 501, 654, 1309, 1530 |
| Bme1390I | CCNGG | 4 cut(s) | 42, 72, 482, 1284 |
| Bme18I | GGWCC | 1 cut(s) | 926 |
| BmeT110I | CYCGRG | 1 cut(s) | 93 |
| BmgT120I | GGNCC | 1 cut(s) | 926 |
| BmiI | GGNNCC | 6 cut(s) | 118, 498, 678, 1176, 1262, 1416 |
| BmrFI | CCNGG | 4 cut(s) | 42, 72, 482, 1284 |
| BmrI | ACTGGG | 1 cut(s) | 748 |
| BmsI | GCATC | 3 cut(s) | 217, 1396, 1621 |
| BmuI | ACTGGG | 1 cut(s) | 748 |
| BpmI | CTGGAG | 1 cut(s) | 1161 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1506 |
| BpuEI | CTTGAG | 1 cut(s) | 1250 |
| BpuMI | CCSGG | 2 cut(s) | 482, 1284 |
| BsaBI | GATNNNNATC | 2 cut(s) | 531, 765 |
| BsaHI | GRCGYC | 1 cut(s) | 117 |
| BsaJI | CCNNGG | 1 cut(s) | 965 |
| BsaWI | WCCGGW | 3 cut(s) | 586, 661, 1198 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1180, 1210, 1544, 1574 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 218, 1028, 1205, 1282, 1283, 1610 |
| Bse1I | ACTGG | 3 cut(s) | 680, 743, 1641 |
| Bse3DI | GCAATG | 2 cut(s) | 438, 1121 |
| Bse8I | GATNNNNATC | 2 cut(s) | 531, 765 |
| BseAI | TCCGGA | 2 cut(s) | 586, 1198 |
| BseBI | CCWGG | 2 cut(s) | 42, 72 |
| BseDI | CCNNGG | 1 cut(s) | 965 |
| BseGI | GGATG | 6 cut(s) | 208, 547, 1214, 1438, 1516, 1598 |
| BseJI | GATNNNNATC | 2 cut(s) | 531, 765 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 218, 1028, 1205, 1282, 1283, 1610 |
| BseMI | GCAATG | 2 cut(s) | 438, 1121 |
| BseMII | CTCAG | 4 cut(s) | 875, 949, 1196, 1497 |
| BseNI | ACTGG | 3 cut(s) | 680, 743, 1641 |
| BseRI | GAGGAG | 1 cut(s) | 509 |
| BseXI | GCAGC | 4 cut(s) | 57, 664, 1294, 1540 |
| BsgI | GTGCAG | 2 cut(s) | 671, 1308 |
| BshFI | GGCC | 2 cut(s) | 814, 823 |
| BshNI | GGYRCC | 1 cut(s) | 116 |
| BsiHKAI | GWGCWC | 3 cut(s) | 180, 1196, 1296 |
| BsiHKCI | CYCGRG | 1 cut(s) | 93 |
| BsiSI | CCGG | 5 cut(s) | 481, 587, 662, 1199, 1283 |
| BslFI | GGGAC | 4 cut(s) | 34, 216, 377, 628 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 218, 1028, 1205, 1282, 1283, 1610 |
| BsmAI | GTCTC | 2 cut(s) | 482, 1196 |
| BsmBI | CGTCTC | 1 cut(s) | 1196 |
| BsmFI | GGGAC | 4 cut(s) | 34, 216, 377, 628 |
| BsmI | GAATGC | 1 cut(s) | 1248 |
| BsnI | GGCC | 2 cut(s) | 814, 823 |
| BsoBI | CYCGRG | 1 cut(s) | 93 |
| Bsp1286I | GDGCHC | 3 cut(s) | 180, 1196, 1296 |
| Bsp13I | TCCGGA | 2 cut(s) | 586, 1198 |
| Bsp1407I | TGTACA | 1 cut(s) | 331 |
| Bsp143I | GATC | 8 cut(s) | 289, 355, 532, 766, 874, 961, 973, 1498 |
| BspACI | CCGC | 4 cut(s) | 114, 187, 500, 1409 |
| BspANI | GGCC | 2 cut(s) | 814, 823 |
| BspCNI | CTCAG | 4 cut(s) | 876, 948, 1195, 1498 |
| BspEI | TCCGGA | 2 cut(s) | 586, 1198 |
| BspLI | GGNNCC | 6 cut(s) | 118, 498, 678, 1176, 1262, 1416 |
| BspMI | ACCTGC | 1 cut(s) | 1385 |
| BspPI | GGATC | 2 cut(s) | 956, 968 |
| BspT107I | GGYRCC | 1 cut(s) | 116 |
| BsrDI | GCAATG | 2 cut(s) | 438, 1121 |
| BsrGI | TGTACA | 1 cut(s) | 331 |
| BsrI | ACTGG | 3 cut(s) | 680, 743, 1641 |
| BssECI | CCNNGG | 1 cut(s) | 965 |
| BssMI | GATC | 8 cut(s) | 289, 355, 532, 766, 874, 961, 973, 1498 |
| BssNAI | GTATAC | 1 cut(s) | 1273 |
| BssNI | GRCGYC | 1 cut(s) | 117 |
| BssSI | CACGAG | 2 cut(s) | 387, 921 |
| Bst1107I | GTATAC | 1 cut(s) | 1273 |
| Bst2BI | CACGAG | 2 cut(s) | 387, 921 |
| Bst2UI | CCWGG | 2 cut(s) | 42, 72 |
| Bst4CI | ACNGT | 4 cut(s) | 242, 336, 367, 790 |
| BstACI | GRCGYC | 1 cut(s) | 117 |
| BstAUI | TGTACA | 1 cut(s) | 331 |
| BstC8I | GCNNGC | 2 cut(s) | 463, 848 |
| BstDEI | CTNAG | 7 cut(s) | 267, 726, 884, 935, 1182, 1357, 1506 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1608 |
| BstF5I | GGATG | 6 cut(s) | 208, 547, 1214, 1438, 1516, 1598 |
| BstH2I | RGCGCY | 1 cut(s) | 120 |
| BstHHI | GCGC | 3 cut(s) | 119, 313, 374 |
| BstKTI | GATC | 8 cut(s) | 292, 358, 535, 769, 877, 964, 976, 1501 |
| BstMAI | GTCTC | 2 cut(s) | 482, 1196 |
| BstMBI | GATC | 8 cut(s) | 289, 355, 532, 766, 874, 961, 973, 1498 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 310, 449, 458, 820, 889, 1049 |
| BstNI | CCWGG | 2 cut(s) | 42, 72 |
| BstNSI | RCATGY | 2 cut(s) | 437, 1561 |
| BstSCI | CCNGG | 4 cut(s) | 40, 70, 480, 1282 |
| BstV1I | GCAGC | 4 cut(s) | 57, 664, 1294, 1540 |
| BstX2I | RGATCY | 1 cut(s) | 973 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 56, 71 |
| BstYI | RGATCY | 1 cut(s) | 973 |
| BstZ17I | GTATAC | 1 cut(s) | 1273 |
| BsuI | GTATCC | 1 cut(s) | 316 |
| BsuRI | GGCC | 2 cut(s) | 814, 823 |
| BtgZI | GCGATG | 1 cut(s) | 1229 |
| BtsCI | GGATG | 6 cut(s) | 208, 547, 1214, 1438, 1516, 1598 |
| BtsIMutI | CAGTG | 2 cut(s) | 705, 1648 |
| BveI | ACCTGC | 1 cut(s) | 1385 |
| Cac8I | GCNNGC | 2 cut(s) | 463, 848 |
| CaiI | CAGNNNCTG | 2 cut(s) | 839, 942 |
| CfoI | GCGC | 3 cut(s) | 119, 313, 374 |
| Cfr13I | GGNCC | 1 cut(s) | 926 |
| Csp6I | GTAC | 1 cut(s) | 332 |
| CviAII | CATG | 7 cut(s) | 191, 301, 434, 449, 1496, 1549, 1558 |
| CviQI | GTAC | 1 cut(s) | 332 |
| DdeI | CTNAG | 7 cut(s) | 267, 726, 884, 935, 1182, 1357, 1506 |
| DinI | GGCGCC | 1 cut(s) | 118 |
| DpnI | GATC | 8 cut(s) | 291, 357, 534, 768, 876, 963, 975, 1500 |
| DpnII | GATC | 8 cut(s) | 289, 355, 532, 766, 874, 961, 973, 1498 |
| DraI | TTTAAA | 1 cut(s) | 1324 |
| EaeI | YGGCCR | 1 cut(s) | 821 |
| EciI | GGCGGA | 1 cut(s) | 176 |
| Ecl136II | GAGCTC | 1 cut(s) | 178 |
| Eco147I | AGGCCT | 1 cut(s) | 814 |
| Eco24I | GRGCYC | 1 cut(s) | 180 |
| Eco32I | GATATC | 2 cut(s) | 27, 712 |
| Eco47I | GGWCC | 1 cut(s) | 926 |
| Eco53kI | GAGCTC | 1 cut(s) | 178 |
| Eco57I | CTGAAG | 3 cut(s) | 847, 1335, 1626 |
| Eco88I | CYCGRG | 1 cut(s) | 93 |
| EcoICRI | GAGCTC | 1 cut(s) | 178 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1608 |
| EcoRII | CCWGG | 2 cut(s) | 40, 70 |
| EcoRV | GATATC | 2 cut(s) | 27, 712 |
| EcoT22I | ATGCAT | 1 cut(s) | 1636 |
| EcoT38I | GRGCYC | 1 cut(s) | 180 |
| EgeI | GGCGCC | 1 cut(s) | 118 |
| EheI | GGCGCC | 1 cut(s) | 118 |
| Esp3I | CGTCTC | 1 cut(s) | 1196 |
| FaeI | CATG | 7 cut(s) | 194, 304, 437, 452, 1499, 1552, 1561 |
| FaqI | GGGAC | 4 cut(s) | 34, 216, 377, 628 |
| FatI | CATG | 7 cut(s) | 190, 300, 433, 448, 1495, 1548, 1557 |
| FauNDI | CATATG | 2 cut(s) | 879, 1486 |
| FbaI | TGATCA | 2 cut(s) | 355, 532 |
| FblI | GTMKAC | 2 cut(s) | 423, 1272 |
| Fnu4HI | GCNGC | 6 cut(s) | 46, 115, 500, 653, 1308, 1529 |
| FokI | GGATG | 6 cut(s) | 195, 554, 1221, 1445, 1523, 1585 |
| FriOI | GRGCYC | 1 cut(s) | 180 |
| Fsp4HI | GCNGC | 6 cut(s) | 46, 115, 500, 653, 1308, 1529 |
| FspBI | CTAG | 2 cut(s) | 795, 900 |
| GlaI | GCGC | 3 cut(s) | 118, 312, 373 |
| GluI | GCNGC | 6 cut(s) | 46, 115, 500, 653, 1308, 1529 |
| GsuI | CTGGAG | 1 cut(s) | 1161 |
| HaeII | RGCGCY | 1 cut(s) | 120 |
| HaeIII | GGCC | 2 cut(s) | 814, 823 |
| HapII | CCGG | 5 cut(s) | 481, 587, 662, 1199, 1283 |
| HhaI | GCGC | 3 cut(s) | 119, 313, 374 |
| Hin1I | GRCGYC | 1 cut(s) | 117 |
| Hin1II | CATG | 7 cut(s) | 194, 304, 437, 452, 1499, 1552, 1561 |
| Hin6I | GCGC | 3 cut(s) | 117, 311, 372 |
| HinP1I | GCGC | 3 cut(s) | 117, 311, 372 |
| HincII | GTYRAC | 1 cut(s) | 339 |
| HindII | GTYRAC | 1 cut(s) | 339 |
| HinfI | GANTC | 9 cut(s) | 6, 550, 634, 702, 721, 761, 776, 830, 980 |
| HpaI | GTTAAC | 1 cut(s) | 339 |
| HpaII | CCGG | 5 cut(s) | 481, 587, 662, 1199, 1283 |
| HphI | GGTGA | 4 cut(s) | 1267, 1409, 1478, 1526 |
| Hpy166II | GTNNAC | 6 cut(s) | 64, 281, 339, 424, 926, 1273 |
| Hpy188I | TCNGA | 6 cut(s) | 766, 874, 969, 996, 1185, 1693 |
| Hpy8I | GTNNAC | 6 cut(s) | 64, 281, 339, 424, 926, 1273 |
| HpyAV | CCTTC | 3 cut(s) | 90, 882, 1310 |
| HpyCH4III | ACNGT | 4 cut(s) | 242, 336, 367, 790 |
| HpyCH4IV | ACGT | 1 cut(s) | 1190 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 310, 449, 458, 820, 889, 1049 |
| HpyF3I | CTNAG | 7 cut(s) | 267, 726, 884, 935, 1182, 1357, 1506 |
| HpySE526I | ACGT | 1 cut(s) | 1190 |
| Hsp92I | GRCGYC | 1 cut(s) | 117 |
| Hsp92II | CATG | 7 cut(s) | 194, 304, 437, 452, 1499, 1552, 1561 |
| HspAI | GCGC | 3 cut(s) | 117, 311, 372 |
| KasI | GGCGCC | 1 cut(s) | 116 |
| Kpn2I | TCCGGA | 2 cut(s) | 586, 1198 |
| Ksp22I | TGATCA | 2 cut(s) | 355, 532 |
| KspAI | GTTAAC | 1 cut(s) | 339 |
| Kzo9I | GATC | 8 cut(s) | 289, 355, 532, 766, 874, 961, 973, 1498 |
| LmnI | GCTCC | 6 cut(s) | 175, 183, 496, 676, 1180, 1579 |
| Lsp1109I | GCAGC | 4 cut(s) | 57, 664, 1294, 1540 |
| LweI | GCATC | 3 cut(s) | 217, 1396, 1621 |
| MaeI | CTAG | 2 cut(s) | 795, 900 |
| MaeII | ACGT | 1 cut(s) | 1190 |
| MaeIII | GTNAC | 3 cut(s) | 361, 777, 835 |
| MalI | GATC | 8 cut(s) | 291, 357, 534, 768, 876, 963, 975, 1500 |
| MboI | GATC | 8 cut(s) | 289, 355, 532, 766, 874, 961, 973, 1498 |
| MboII | GAAGA | 5 cut(s) | 29, 653, 1454, 1481, 1661 |
| MfeI | CAATTG | 1 cut(s) | 690 |
| MflI | RGATCY | 1 cut(s) | 973 |
| MhlI | GDGCHC | 3 cut(s) | 180, 1196, 1296 |
| MlsI | TGGCCA | 1 cut(s) | 823 |
| MluCI | AATT | 6 cut(s) | 592, 690, 999, 1045, 1371, 1518 |
| MluNI | TGGCCA | 1 cut(s) | 823 |
| Mly113I | GGCGCC | 1 cut(s) | 117 |
| MlyI | GAGTC | 2 cut(s) | 15, 785 |
| MmeI | TCCRAC | 2 cut(s) | 153, 177 |
| Mox20I | TGGCCA | 1 cut(s) | 823 |
| Mph1103I | ATGCAT | 1 cut(s) | 1636 |
| MroI | TCCGGA | 2 cut(s) | 586, 1198 |
| MscI | TGGCCA | 1 cut(s) | 823 |
| MseI | TTAA | 4 cut(s) | 252, 338, 1323, 1545 |
| MslI | CAYNNNNRTG | 3 cut(s) | 411, 453, 1253 |
| Msp20I | TGGCCA | 1 cut(s) | 823 |
| MspI | CCGG | 5 cut(s) | 481, 587, 662, 1199, 1283 |
| MspR9I | CCNGG | 4 cut(s) | 42, 72, 482, 1284 |
| MunI | CAATTG | 1 cut(s) | 690 |
| Mva1269I | GAATGC | 1 cut(s) | 1248 |
| MvaI | CCWGG | 2 cut(s) | 42, 72 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 310, 449, 458, 820, 889, 1049 |
| NarI | GGCGCC | 1 cut(s) | 117 |
| NciI | CCSGG | 2 cut(s) | 482, 1284 |
| NdeI | CATATG | 2 cut(s) | 879, 1486 |
| NdeII | GATC | 8 cut(s) | 289, 355, 532, 766, 874, 961, 973, 1498 |
| NlaIII | CATG | 7 cut(s) | 194, 304, 437, 452, 1499, 1552, 1561 |
| NlaIV | GGNNCC | 6 cut(s) | 118, 498, 678, 1176, 1262, 1416 |
| NmuCI | GTSAC | 1 cut(s) | 777 |
| NsiI | ATGCAT | 1 cut(s) | 1636 |
| NspI | RCATGY | 2 cut(s) | 437, 1561 |
| PaeR7I | CTCGAG | 1 cut(s) | 93 |
| PaqCI | CACCTGC | 1 cut(s) | 1385 |
| PceI | AGGCCT | 1 cut(s) | 814 |
| PciI | ACATGT | 1 cut(s) | 1557 |
| PctI | GAATGC | 1 cut(s) | 1248 |
| PfeI | GAWTC | 7 cut(s) | 550, 634, 702, 721, 761, 830, 980 |
| PkrI | GCNGC | 6 cut(s) | 47, 116, 501, 654, 1309, 1530 |
| PleI | GAGTC | 2 cut(s) | 14, 784 |
| PluTI | GGCGCC | 1 cut(s) | 120 |
| PpsI | GAGTC | 2 cut(s) | 14, 784 |
| PscI | ACATGT | 1 cut(s) | 1557 |
| Psp124BI | GAGCTC | 1 cut(s) | 180 |
| Psp6I | CCWGG | 2 cut(s) | 40, 70 |
| PspGI | CCWGG | 2 cut(s) | 40, 70 |
| PspN4I | GGNNCC | 6 cut(s) | 118, 498, 678, 1176, 1262, 1416 |
| PspPI | GGNCC | 1 cut(s) | 926 |
| PstNI | CAGNNNCTG | 2 cut(s) | 839, 942 |
| PsuI | RGATCY | 1 cut(s) | 973 |
| RsaI | GTAC | 1 cut(s) | 333 |
| RsaNI | GTAC | 1 cut(s) | 332 |
| RseI | CAYNNNNRTG | 3 cut(s) | 411, 453, 1253 |
| SacI | GAGCTC | 1 cut(s) | 180 |
| SaqAI | TTAA | 4 cut(s) | 252, 338, 1323, 1545 |
| SatI | GCNGC | 6 cut(s) | 46, 115, 500, 653, 1308, 1529 |
| Sau3AI | GATC | 8 cut(s) | 289, 355, 532, 766, 874, 961, 973, 1498 |
| Sau96I | GGNCC | 1 cut(s) | 926 |
| SchI | GAGTC | 2 cut(s) | 15, 785 |
| ScrFI | CCNGG | 4 cut(s) | 42, 72, 482, 1284 |
| SduI | GDGCHC | 3 cut(s) | 180, 1196, 1296 |
| SfaNI | GCATC | 3 cut(s) | 217, 1396, 1621 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 820 |
| SfoI | GGCGCC | 1 cut(s) | 118 |
| Sfr274I | CTCGAG | 1 cut(s) | 93 |
| SinI | GGWCC | 1 cut(s) | 926 |
| SlaI | CTCGAG | 1 cut(s) | 93 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 411, 453, 1253 |
| SmlI | CTYRAG | 2 cut(s) | 93, 1229 |
| SmoI | CTYRAG | 2 cut(s) | 93, 1229 |
| Sse9I | AATT | 6 cut(s) | 592, 690, 999, 1045, 1371, 1518 |
| SseBI | AGGCCT | 1 cut(s) | 814 |
| SsiI | CCGC | 4 cut(s) | 114, 187, 500, 1409 |
| SspDI | GGCGCC | 1 cut(s) | 116 |
| SspMI | CTAG | 2 cut(s) | 795, 900 |
| SstI | GAGCTC | 1 cut(s) | 180 |
| StuI | AGGCCT | 1 cut(s) | 814 |
| StyD4I | CCNGG | 4 cut(s) | 40, 70, 480, 1282 |
| TaaI | ACNGT | 4 cut(s) | 242, 336, 367, 790 |
| TaiI | ACGT | 1 cut(s) | 1193 |
| TaqI | TCGA | 5 cut(s) | 94, 102, 486, 1009, 1093 |
| TasI | AATT | 6 cut(s) | 592, 690, 999, 1045, 1371, 1518 |
| TatI | WGTACW | 1 cut(s) | 331 |
| TauI | GCSGC | 2 cut(s) | 117, 502 |
| TfiI | GAWTC | 7 cut(s) | 550, 634, 702, 721, 761, 830, 980 |
| Tru1I | TTAA | 4 cut(s) | 252, 338, 1323, 1545 |
| Tru9I | TTAA | 4 cut(s) | 252, 338, 1323, 1545 |
| TscAI | CASTG | 2 cut(s) | 712, 1648 |
| TseFI | GTSAC | 1 cut(s) | 777 |
| TseI | GCWGC | 4 cut(s) | 45, 652, 1307, 1528 |
| Tsp45I | GTSAC | 1 cut(s) | 777 |
| TspDTI | ATGAA | 5 cut(s) | 437, 1206, 1383, 1527, 1662 |
| TspGWI | ACGGA | 1 cut(s) | 1258 |
| TspRI | CASTG | 2 cut(s) | 712, 1648 |
| VpaK11BI | GGWCC | 1 cut(s) | 926 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1608 |
| XapI | RAATTY | 1 cut(s) | 1518 |
| XbaI | TCTAGA | 1 cut(s) | 899 |
| XceI | RCATGY | 2 cut(s) | 437, 1561 |
| XhoI | CTCGAG | 1 cut(s) | 93 |
| XmiI | GTMKAC | 2 cut(s) | 423, 1272 |
| XspI | CTAG | 2 cut(s) | 795, 900 |
| Zsp2I | ATGCAT | 1 cut(s) | 1636 |