RchiOBHm_Chr2g0084521

General transcription factor 3C polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0006712
Physical Location & Seq
Reverse (-)
252368 .. 256391
4024 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46011

Sequence Viewer

Length: 1017 bp
ATGTTGTACTTAACATTCTTACAGATTCCTAAGAGAACAAACTGGGAGGAATATATACTTCAAGATTCAGATCAGTGGGAGTCACAGATGGCCGTTTCTAGCCTGTTTGATGAGAGGCCTGTATGGCCAAAGGATTCAGTAACTGAACGCTTGCTTGATAAGGGCTGCAGTTTTTCAGATCATATGCTGAGAAGGCTTCTTTCTAGAGTTGCATACTACTTTTCTCGTGGACCATTTCTCAGGTTCTGGATAAAAAAAGGATTTGATCCTCGGAAAGATCCTGATTCTCGCATATATCAGAAAATTGATTTTCGAGTAAAACCACCATTACAAGGTTATTGTGAGGCTAATTCAGCCAATCAACTAAAGCATAAATGGGGGGATTTATGTGCATTTCGAGTGTTTCCTTACAAGTGCCATACAACATTGCAACTCTTTGAACTTGATGATGATTACATTCAAGAACAGATAAGAAAGGCTCCAGCTCAGACAACGTGCTCTCCAGAGACGGGATGGTTTTCATATAACTTGCTTGAGAACTTGAAACATCGCGTTCAGGTGAGGTTCCTATCCGTATACCCAAGACCGGGTGCAGAGCACTTGCTCAAAGCTGCTACTGAAAGCTTTAAAAAGTCAAAGAGGATATGCAATAAAGACAACTTAGTGCGTGATGAAATTGTCCAGCAACAAGCCAATGCAGAACTTACAGGTGATGTCGATGTGGAGGAACCCAACAATGTTGAGGATGATGAGGAAGATGATATTGAGGTTGATAATGGTGAAGAAACATTAGATACATATGATGGACATGATCTGGCTGAGGATGGTGAAATTTCTTTGCAGCCACATTCATATCTTAACATGGAGAACATGTCAAGAACTCATTTACAGGAGCTTTTTGGTAGTTTTCCATCCCCTGAAGCCGGGGGCAATAGAATACAAGATGCATATACCAGTGATGAAGAATACCAGATTTATGAGCAAGATAGTGATGGCAACTTCTCTGACGAAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tau95

Protein Analysis

338

Amino Acids

39.51

Weight (kDa)

4.69

Isoelectric Point (pI)

49.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tau95 PF09734 14 - 105 3.8e-24 RNA polymerase III transcription factor (TF)IIIC subunit HTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 576
AccII CGCG 1 cut(s) 552
AclWI GGATC 2 cut(s) 260, 272
AcoI YGGCCR 2 cut(s) 90, 125
AcsI RAATTY 1 cut(s) 831
AcuI CTGAAG 1 cut(s) 939
AfaI GTAC 1 cut(s) 8
AfiI CCNNNNNNNGG 5 cut(s) 332, 509, 586, 587, 923
AflIII ACRYGT 1 cut(s) 870
AgsI TTSAA 4 cut(s) 62, 440, 461, 544
AluBI AGCT 4 cut(s) 485, 611, 624, 895
AluI AGCT 4 cut(s) 485, 611, 624, 895
Alw21I GWGCWC 2 cut(s) 500, 600
Alw26I GTCTC 1 cut(s) 500
AlwI GGATC 2 cut(s) 260, 272
AlwNI CAGNNNCTG 2 cut(s) 143, 246
AoxI GGCC 3 cut(s) 90, 116, 125
ApeKI GCWGC 3 cut(s) 165, 611, 841
ApoI RAATTY 1 cut(s) 831
AspS9I GGNCC 1 cut(s) 230
AsuC2I CCSGG 2 cut(s) 588, 925
AsuHPI GGTGA 4 cut(s) 571, 722, 791, 839
AvaII GGWCC 1 cut(s) 230
BalI TGGCCA 1 cut(s) 127
BauI CACGAG 1 cut(s) 225
Bbv12I GWGCWC 2 cut(s) 500, 600
BbvCI CCTCAGC 1 cut(s) 819
BbvI GCAGC 3 cut(s) 152, 598, 853
BccI CCATC 6 cut(s) 82, 507, 797, 818, 919, 986
BceAI ACGGC 1 cut(s) 77
BcnI CCSGG 2 cut(s) 588, 925
BcoDI GTCTC 1 cut(s) 500
BfaI CTAG 2 cut(s) 99, 204
BfmI CTRYAG 1 cut(s) 166
BglI GCCNNNNNGGC 1 cut(s) 124
BisI GCNGC 3 cut(s) 166, 612, 842
BlsI GCNGC 3 cut(s) 167, 613, 843
Bme1390I CCNGG 2 cut(s) 588, 925
Bme18I GGWCC 1 cut(s) 230
BmgT120I GGNCC 1 cut(s) 230
BmiI GGNNCC 3 cut(s) 480, 566, 729
BmrFI CCNGG 2 cut(s) 588, 925
BmrI ACTGGG 1 cut(s) 52
BmsI GCATC 1 cut(s) 934
BmuI ACTGGG 1 cut(s) 52
BpmI CTGGAG 2 cut(s) 465, 486
Bpu10I CCTNAGC 1 cut(s) 819
BpuEI CTTGAG 1 cut(s) 554
BpuMI CCSGG 2 cut(s) 588, 925
BsaBI GATNNNNATC 1 cut(s) 69
BsaJI CCNNGG 2 cut(s) 269, 924
BsaXI ACNNNNNCTCC 4 cut(s) 484, 514, 857, 887
Bsc4I CCNNNNNNNGG 5 cut(s) 332, 509, 586, 587, 923
Bse1I ACTGG 2 cut(s) 47, 954
Bse3DI GCAATG 1 cut(s) 425
Bse8I GATNNNNATC 1 cut(s) 69
BseDI CCNNGG 2 cut(s) 269, 924
BseGI GGATG 4 cut(s) 518, 751, 829, 911
BseJI GATNNNNATC 1 cut(s) 69
BseLI CCNNNNNNNGG 5 cut(s) 332, 509, 586, 587, 923
BseMI GCAATG 1 cut(s) 425
BseMII CTCAG 4 cut(s) 179, 253, 500, 810
BseNI ACTGG 2 cut(s) 47, 954
BseXI GCAGC 3 cut(s) 152, 598, 853
BsgI GTGCAG 1 cut(s) 612
Bsh1236I CGCG 1 cut(s) 552
BshFI GGCC 3 cut(s) 92, 118, 127
BsiHKAI GWGCWC 2 cut(s) 500, 600
BsiSI CCGG 2 cut(s) 587, 924
BslI CCNNNNNNNGG 5 cut(s) 332, 509, 586, 587, 923
BsmAI GTCTC 1 cut(s) 500
BsmBI CGTCTC 1 cut(s) 500
BsnI GGCC 3 cut(s) 92, 118, 127
Bsp1286I GDGCHC 2 cut(s) 500, 600
Bsp143I GATC 5 cut(s) 70, 178, 265, 277, 811
BspANI GGCC 3 cut(s) 92, 118, 127
BspCNI CTCAG 4 cut(s) 180, 252, 499, 811
BspFNI CGCG 1 cut(s) 552
BspLI GGNNCC 3 cut(s) 480, 566, 729
BspMAI CTGCAG 1 cut(s) 170
BspPI GGATC 2 cut(s) 260, 272
BsrDI GCAATG 1 cut(s) 425
BsrI ACTGG 2 cut(s) 47, 954
BssECI CCNNGG 2 cut(s) 269, 924
BssMI GATC 5 cut(s) 70, 178, 265, 277, 811
BssNAI GTATAC 1 cut(s) 577
BssSI CACGAG 1 cut(s) 225
Bst1107I GTATAC 1 cut(s) 577
Bst2BI CACGAG 1 cut(s) 225
BstC8I GCNNGC 1 cut(s) 152
BstDEI CTNAG 6 cut(s) 30, 188, 239, 486, 661, 819
BstF5I GGATG 4 cut(s) 518, 751, 829, 911
BstFNI CGCG 1 cut(s) 552
BstKTI GATC 5 cut(s) 73, 181, 268, 280, 814
BstMAI GTCTC 1 cut(s) 500
BstMBI GATC 5 cut(s) 70, 178, 265, 277, 811
BstMWI GCNNNNNNNGC 3 cut(s) 124, 193, 353
BstNSI RCATGY 1 cut(s) 874
BstSCI CCNGG 2 cut(s) 586, 923
BstSFI CTRYAG 1 cut(s) 166
BstUI CGCG 1 cut(s) 552
BstV1I GCAGC 3 cut(s) 152, 598, 853
BstX2I RGATCY 1 cut(s) 277
BstYI RGATCY 1 cut(s) 277
BstZ17I GTATAC 1 cut(s) 577
BsuRI GGCC 3 cut(s) 92, 118, 127
BtgZI GCGATG 1 cut(s) 533
BtsCI GGATG 4 cut(s) 518, 751, 829, 911
BtsIMutI CAGTG 2 cut(s) 80, 961
Cac8I GCNNGC 1 cut(s) 152
CaiI CAGNNNCTG 2 cut(s) 143, 246
Cfr13I GGNCC 1 cut(s) 230
Csp6I GTAC 1 cut(s) 7
CviAII CATG 3 cut(s) 809, 862, 871
CviQI GTAC 1 cut(s) 7
DdeI CTNAG 6 cut(s) 30, 188, 239, 486, 661, 819
DpnI GATC 5 cut(s) 72, 180, 267, 279, 813
DpnII GATC 5 cut(s) 70, 178, 265, 277, 811
DraI TTTAAA 1 cut(s) 628
EaeI YGGCCR 2 cut(s) 90, 125
Eco147I AGGCCT 1 cut(s) 118
Eco47I GGWCC 1 cut(s) 230
Eco57I CTGAAG 1 cut(s) 939
EcoT22I ATGCAT 1 cut(s) 949
Esp3I CGTCTC 1 cut(s) 500
FaeI CATG 3 cut(s) 812, 865, 874
FatI CATG 3 cut(s) 808, 861, 870
FauNDI CATATG 2 cut(s) 183, 799
FblI GTMKAC 1 cut(s) 576
Fnu4HI GCNGC 3 cut(s) 166, 612, 842
FokI GGATG 4 cut(s) 525, 758, 836, 898
Fsp4HI GCNGC 3 cut(s) 166, 612, 842
FspBI CTAG 2 cut(s) 99, 204
GluI GCNGC 3 cut(s) 166, 612, 842
GsuI CTGGAG 2 cut(s) 465, 486
HaeIII GGCC 3 cut(s) 92, 118, 127
HapII CCGG 2 cut(s) 587, 924
Hin1II CATG 3 cut(s) 812, 865, 874
HindIII AAGCTT 1 cut(s) 622
HinfI GANTC 5 cut(s) 25, 65, 80, 134, 284
HpaII CCGG 2 cut(s) 587, 924
HphI GGTGA 4 cut(s) 571, 722, 791, 839
Hpy166II GTNNAC 2 cut(s) 230, 577
Hpy188I TCNGA 6 cut(s) 70, 178, 273, 300, 489, 1006
Hpy188III TCNNGA 7 cut(s) 62, 204, 247, 281, 461, 503, 876
Hpy8I GTNNAC 2 cut(s) 230, 577
HpyAV CCTTC 1 cut(s) 186
HpyCH4IV ACGT 1 cut(s) 494
HpyCH4V TGCA 9 cut(s) 168, 212, 392, 430, 593, 648, 698, 841, 947
HpyF10VI GCNNNNNNNGC 3 cut(s) 124, 193, 353
HpyF3I CTNAG 6 cut(s) 30, 188, 239, 486, 661, 819
HpySE526I ACGT 1 cut(s) 494
Hsp92II CATG 3 cut(s) 812, 865, 874
Kzo9I GATC 5 cut(s) 70, 178, 265, 277, 811
LmnI GCTCC 2 cut(s) 484, 892
Lsp1109I GCAGC 3 cut(s) 152, 598, 853
LweI GCATC 1 cut(s) 934
MaeI CTAG 2 cut(s) 99, 204
MaeII ACGT 1 cut(s) 494
MaeIII GTNAC 2 cut(s) 81, 139
MalI GATC 5 cut(s) 72, 180, 267, 279, 813
MboI GATC 5 cut(s) 70, 178, 265, 277, 811
MboII GAAGA 3 cut(s) 767, 794, 974
MflI RGATCY 1 cut(s) 277
MhlI GDGCHC 2 cut(s) 500, 600
MlsI TGGCCA 1 cut(s) 127
MluCI AATT 4 cut(s) 303, 349, 675, 831
MluNI TGGCCA 1 cut(s) 127
MlyI GAGTC 1 cut(s) 89
Mox20I TGGCCA 1 cut(s) 127
Mph1103I ATGCAT 1 cut(s) 949
MscI TGGCCA 1 cut(s) 127
MseI TTAA 3 cut(s) 11, 627, 858
Msp20I TGGCCA 1 cut(s) 127
MspI CCGG 2 cut(s) 587, 924
MspR9I CCNGG 2 cut(s) 588, 925
MvnI CGCG 1 cut(s) 552
MwoI GCNNNNNNNGC 3 cut(s) 124, 193, 353
NciI CCSGG 2 cut(s) 588, 925
NdeI CATATG 2 cut(s) 183, 799
NdeII GATC 5 cut(s) 70, 178, 265, 277, 811
NlaIII CATG 3 cut(s) 812, 865, 874
NlaIV GGNNCC 3 cut(s) 480, 566, 729
NmuCI GTSAC 1 cut(s) 81
NsiI ATGCAT 1 cut(s) 949
NspI RCATGY 1 cut(s) 874
PceI AGGCCT 1 cut(s) 118
PciI ACATGT 1 cut(s) 870
PfeI GAWTC 4 cut(s) 25, 65, 134, 284
PkrI GCNGC 3 cut(s) 167, 613, 843
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
PscI ACATGT 1 cut(s) 870
PspN4I GGNNCC 3 cut(s) 480, 566, 729
PspPI GGNCC 1 cut(s) 230
PstI CTGCAG 1 cut(s) 170
PstNI CAGNNNCTG 2 cut(s) 143, 246
PsuI RGATCY 1 cut(s) 277
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
SaqAI TTAA 3 cut(s) 11, 627, 858
SatI GCNGC 3 cut(s) 166, 612, 842
Sau3AI GATC 5 cut(s) 70, 178, 265, 277, 811
Sau96I GGNCC 1 cut(s) 230
SchI GAGTC 1 cut(s) 89
ScrFI CCNGG 2 cut(s) 588, 925
SduI GDGCHC 2 cut(s) 500, 600
SfaNI GCATC 1 cut(s) 934
SfcI CTRYAG 1 cut(s) 166
SfiI GGCCNNNNNGGCC 1 cut(s) 124
SinI GGWCC 1 cut(s) 230
SmlI CTYRAG 1 cut(s) 533
SmoI CTYRAG 1 cut(s) 533
Sse9I AATT 4 cut(s) 303, 349, 675, 831
SseBI AGGCCT 1 cut(s) 118
SspMI CTAG 2 cut(s) 99, 204
StuI AGGCCT 1 cut(s) 118
StyD4I CCNGG 2 cut(s) 586, 923
TaiI ACGT 1 cut(s) 497
TaqI TCGA 3 cut(s) 313, 397, 717
TasI AATT 4 cut(s) 303, 349, 675, 831
TatI WGTACW 1 cut(s) 6
TfiI GAWTC 4 cut(s) 25, 65, 134, 284
Tru1I TTAA 3 cut(s) 11, 627, 858
Tru9I TTAA 3 cut(s) 11, 627, 858
TscAI CASTG 2 cut(s) 80, 961
TseFI GTSAC 1 cut(s) 81
TseI GCWGC 3 cut(s) 165, 611, 841
Tsp45I GTSAC 1 cut(s) 81
TspDTI ATGAA 4 cut(s) 510, 687, 840, 975
TspGWI ACGGA 1 cut(s) 562
TspRI CASTG 2 cut(s) 80, 961
VpaK11BI GGWCC 1 cut(s) 230
XapI RAATTY 1 cut(s) 831
XbaI TCTAGA 1 cut(s) 203
XceI RCATGY 1 cut(s) 874
XcmI CCANNNNNNNNNTGG 1 cut(s) 510
XmiI GTMKAC 1 cut(s) 576
XspI CTAG 2 cut(s) 99, 204
Zsp2I ATGCAT 1 cut(s) 949
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.