Rh2AG002800

General transcription factor 3C polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0006712
Physical Location & Seq
Reverse (-)
221733 .. 227904
6172 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG002800.1

Sequence Viewer

Length: 1350 bp
ATGGTAGACTACCAGCATGTCATTGCTGTTCATGCTGATGTTGCACGCAAGAGAAAGAGAAACCGGGTCGAGACAGAGGAGCCGCACTTTGACAGAGGTGGTCTTATGGATATTGATCAGGAGGATGTGATGATTCTATTGCCCCAACTTTTTGCACCCAAAGATGTTCCGGATAATTTAGTGTTGAAATCATCAGGGACATTGAGTGTAAAAAAGAATCAAGAAGAACCTGTGCAGCACCAACCGGAGATGGATATGGAGCCAGTTCTTGCAATTGACTTTGGAATCACTGATATCCTAATGATTCCTAAGAGAACAAACTGGGAGGAATATATACTTCAAGATTCAGATCAGTGGGAGTCACAGATGGCCGTTTCTAGCCTGTTTGATGAGAGGCCTGTATGGCCAAAGGATTCAGTAACTGAACGCTTGCTTGATAAGGGCTTCAGTTTTTCAGATCATATGCTGAGAAGGCTTCTTTCTAGAGTTGCATACTACTTTTCTCGTGGACCATTTCTCAGGTTCTGGATAAAAAAAGGATTTGATCCTCGGAAAGATCCTGATTCTCGCATATATCAGAAAATTGATTTTCGAGTAAAACCACCATTACAAGGTTATTGTGAGGCTAATTCAGCCAATCAGCTAAAGCATAAATGGGGGGATTTATGTGCATTTCGAGTGTTTCCTTACAAGTGCCATACAACATTGCAACTCTTTGAACTTGATGATGATTACATTCAAGAACAGATAAGAAAGGCTCCAGCTCAGACAACGTGCTCTCCTGAGACGGGATGGTTTTCATATAACTTGCTTGAGAACTTGAAACATCGCGTTCAGGTGAGGTTCCTATCCGTATACCCAAGACCGGGTGCAGAGCACTTGCTCAAAGCTGCTACTGAAAGCTTTAAAAAGTCAAAGAGGATATGCAATAAAGACAACTTAGTGCGTGATGAAATTGTCCAGCAACAAGCCAATGCAGGTACAAAAGGAAAACTTCACTTTTGGGAGTTACTTATCAAGTATATTTCCCTAGAACTTACAGGTGATGTAGATGCGGAGGAACCCAACAATGTTGAGGATGATGAGGAAGATGATATTGAGGTTGATAATGGTGAAGAAACATTAGATACATATGATGGACATGATCTGGCTGAGGATGGTGAAATTTCTTTGCAGCCACATTCATATCTTAACATGGAGAACATGTCAAGAACTCATTTACAGGAGCTTTTTGGTAGTTTTCCATCCCCTGAAGCAGGGGGCAATAGAATACAAGATGCATATACCAGTGATGAAGAATACCAGATTTATGAGCAAGATAGTGATGGCAACTTCTCTGACGAAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tau95

Protein Analysis

449

Amino Acids

52.16

Weight (kDa)

4.8

Isoelectric Point (pI)

46.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tau95 PF09734 45 - 198 1.8e-26 RNA polymerase III transcription factor (TF)IIIC subunit HTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 968
AccI GTMKAC 2 cut(s) 6, 855
AccII CGCG 1 cut(s) 831
AccIII TCCGGA 1 cut(s) 169
AciI CCGC 2 cut(s) 83, 1055
AclWI GGATC 2 cut(s) 539, 551
AcoI YGGCCR 2 cut(s) 369, 404
AcsI RAATTY 1 cut(s) 1164
AcuI CTGAAG 2 cut(s) 430, 1272
AfaI GTAC 1 cut(s) 982
AfiI CCNNNNNNNGG 5 cut(s) 611, 788, 865, 866, 1256
AflIII ACRYGT 1 cut(s) 1203
AgsI TTSAA 5 cut(s) 187, 341, 719, 740, 823
AluBI AGCT 5 cut(s) 643, 764, 890, 903, 1228
AluI AGCT 5 cut(s) 643, 764, 890, 903, 1228
Alw21I GWGCWC 2 cut(s) 779, 879
Alw26I GTCTC 2 cut(s) 65, 779
AlwI GGATC 2 cut(s) 539, 551
AlwNI CAGNNNCTG 2 cut(s) 422, 525
Aor13HI TCCGGA 1 cut(s) 169
AoxI GGCC 3 cut(s) 369, 395, 404
ApeKI GCWGC 3 cut(s) 235, 890, 1174
ApoI RAATTY 1 cut(s) 1164
AspS9I GGNCC 1 cut(s) 509
AsuC2I CCSGG 2 cut(s) 65, 867
AsuHPI GGTGA 4 cut(s) 850, 1055, 1124, 1172
AvaII GGWCC 1 cut(s) 509
BalI TGGCCA 1 cut(s) 406
BauI CACGAG 1 cut(s) 504
Bbv12I GWGCWC 2 cut(s) 779, 879
BbvCI CCTCAGC 1 cut(s) 1152
BbvI GCAGC 3 cut(s) 247, 877, 1186
BccI CCATC 7 cut(s) 244, 361, 786, 1130, 1151, 1252, 1319
BceAI ACGGC 1 cut(s) 356
BclI TGATCA 1 cut(s) 115
BcnI CCSGG 2 cut(s) 65, 867
BcoDI GTCTC 2 cut(s) 65, 779
BfaI CTAG 3 cut(s) 378, 483, 1031
BfuAI ACCTGC 1 cut(s) 968
BglI GCCNNNNNGGC 1 cut(s) 403
BisI GCNGC 4 cut(s) 83, 236, 891, 1175
BlsI GCNGC 4 cut(s) 84, 237, 892, 1176
Bme1390I CCNGG 2 cut(s) 65, 867
Bme18I GGWCC 1 cut(s) 509
BmgT120I GGNCC 1 cut(s) 509
BmiI GGNNCC 5 cut(s) 81, 261, 759, 845, 1062
BmrFI CCNGG 2 cut(s) 65, 867
BmrI ACTGGG 1 cut(s) 331
BmsI GCATC 2 cut(s) 1042, 1267
BmuI ACTGGG 1 cut(s) 331
BpmI CTGGAG 1 cut(s) 744
Bpu10I CCTNAGC 1 cut(s) 1152
BpuEI CTTGAG 1 cut(s) 833
BpuMI CCSGG 2 cut(s) 65, 867
BsaBI GATNNNNATC 2 cut(s) 114, 348
BsaJI CCNNGG 1 cut(s) 548
BsaWI WCCGGW 2 cut(s) 169, 244
BsaXI ACNNNNNCTCC 4 cut(s) 763, 793, 1190, 1220
Bsc4I CCNNNNNNNGG 5 cut(s) 611, 788, 865, 866, 1256
Bse1I ACTGG 3 cut(s) 263, 326, 1287
Bse3DI GCAATG 2 cut(s) 21, 704
Bse8I GATNNNNATC 2 cut(s) 114, 348
BseAI TCCGGA 1 cut(s) 169
BseDI CCNNGG 1 cut(s) 548
BseGI GGATG 5 cut(s) 130, 797, 1084, 1162, 1244
BseJI GATNNNNATC 2 cut(s) 114, 348
BseLI CCNNNNNNNGG 5 cut(s) 611, 788, 865, 866, 1256
BseMI GCAATG 2 cut(s) 21, 704
BseMII CTCAG 5 cut(s) 458, 532, 774, 779, 1143
BseNI ACTGG 3 cut(s) 263, 326, 1287
BseRI GAGGAG 1 cut(s) 92
BseXI GCAGC 3 cut(s) 247, 877, 1186
BsgI GTGCAG 2 cut(s) 254, 891
Bsh1236I CGCG 1 cut(s) 831
BshFI GGCC 3 cut(s) 371, 397, 406
BsiHKAI GWGCWC 2 cut(s) 779, 879
BsiSI CCGG 4 cut(s) 64, 170, 245, 866
BslFI GGGAC 1 cut(s) 211
BslI CCNNNNNNNGG 5 cut(s) 611, 788, 865, 866, 1256
BsmAI GTCTC 2 cut(s) 65, 779
BsmBI CGTCTC 1 cut(s) 779
BsmFI GGGAC 1 cut(s) 211
BsnI GGCC 3 cut(s) 371, 397, 406
Bsp1286I GDGCHC 2 cut(s) 779, 879
Bsp13I TCCGGA 1 cut(s) 169
Bsp143I GATC 6 cut(s) 115, 349, 457, 544, 556, 1144
BspACI CCGC 2 cut(s) 83, 1055
BspANI GGCC 3 cut(s) 371, 397, 406
BspCNI CTCAG 5 cut(s) 459, 531, 775, 778, 1144
BspEI TCCGGA 1 cut(s) 169
BspFNI CGCG 1 cut(s) 831
BspLI GGNNCC 5 cut(s) 81, 261, 759, 845, 1062
BspMI ACCTGC 1 cut(s) 968
BspPI GGATC 2 cut(s) 539, 551
BsrDI GCAATG 2 cut(s) 21, 704
BsrI ACTGG 3 cut(s) 263, 326, 1287
BssECI CCNNGG 1 cut(s) 548
BssMI GATC 6 cut(s) 115, 349, 457, 544, 556, 1144
BssNAI GTATAC 1 cut(s) 856
BssSI CACGAG 1 cut(s) 504
Bst1107I GTATAC 1 cut(s) 856
Bst2BI CACGAG 1 cut(s) 504
BstC8I GCNNGC 2 cut(s) 46, 431
BstDEI CTNAG 7 cut(s) 309, 467, 518, 765, 783, 940, 1152
BstENI CCTNNNNNAGG 1 cut(s) 1254
BstF5I GGATG 5 cut(s) 130, 797, 1084, 1162, 1244
BstFNI CGCG 1 cut(s) 831
BstKTI GATC 6 cut(s) 118, 352, 460, 547, 559, 1147
BstMAI GTCTC 2 cut(s) 65, 779
BstMBI GATC 6 cut(s) 115, 349, 457, 544, 556, 1144
BstMWI GCNNNNNNNGC 5 cut(s) 32, 41, 403, 472, 632
BstNSI RCATGY 2 cut(s) 20, 1207
BstSCI CCNGG 2 cut(s) 63, 865
BstUI CGCG 1 cut(s) 831
BstV1I GCAGC 3 cut(s) 247, 877, 1186
BstX2I RGATCY 1 cut(s) 556
BstYI RGATCY 1 cut(s) 556
BstZ17I GTATAC 1 cut(s) 856
BsuRI GGCC 3 cut(s) 371, 397, 406
BtgZI GCGATG 1 cut(s) 812
BtsCI GGATG 5 cut(s) 130, 797, 1084, 1162, 1244
BtsIMutI CAGTG 3 cut(s) 288, 359, 1294
BveI ACCTGC 1 cut(s) 968
Cac8I GCNNGC 2 cut(s) 46, 431
CaiI CAGNNNCTG 2 cut(s) 422, 525
Cfr13I GGNCC 1 cut(s) 509
Csp6I GTAC 1 cut(s) 981
CviAII CATG 5 cut(s) 17, 32, 1142, 1195, 1204
CviQI GTAC 1 cut(s) 981
DdeI CTNAG 7 cut(s) 309, 467, 518, 765, 783, 940, 1152
DpnI GATC 6 cut(s) 117, 351, 459, 546, 558, 1146
DpnII GATC 6 cut(s) 115, 349, 457, 544, 556, 1144
DraI TTTAAA 1 cut(s) 907
EaeI YGGCCR 2 cut(s) 369, 404
Eco147I AGGCCT 1 cut(s) 397
Eco32I GATATC 1 cut(s) 295
Eco47I GGWCC 1 cut(s) 509
Eco57I CTGAAG 2 cut(s) 430, 1272
EcoNI CCTNNNNNAGG 1 cut(s) 1254
EcoRV GATATC 1 cut(s) 295
EcoT22I ATGCAT 1 cut(s) 1282
Esp3I CGTCTC 1 cut(s) 779
FaeI CATG 5 cut(s) 20, 35, 1145, 1198, 1207
FalI AAGNNNNNCTT 2 cut(s) 978, 1010
FaqI GGGAC 1 cut(s) 211
FatI CATG 5 cut(s) 16, 31, 1141, 1194, 1203
FauNDI CATATG 2 cut(s) 462, 1132
FbaI TGATCA 1 cut(s) 115
FblI GTMKAC 2 cut(s) 6, 855
Fnu4HI GCNGC 4 cut(s) 83, 236, 891, 1175
FokI GGATG 5 cut(s) 137, 804, 1091, 1169, 1231
Fsp4HI GCNGC 4 cut(s) 83, 236, 891, 1175
FspBI CTAG 3 cut(s) 378, 483, 1031
GluI GCNGC 4 cut(s) 83, 236, 891, 1175
GsuI CTGGAG 1 cut(s) 744
HaeIII GGCC 3 cut(s) 371, 397, 406
HapII CCGG 4 cut(s) 64, 170, 245, 866
Hin1II CATG 5 cut(s) 20, 35, 1145, 1198, 1207
HindIII AAGCTT 1 cut(s) 901
HinfI GANTC 8 cut(s) 133, 217, 285, 304, 344, 359, 413, 563
HpaII CCGG 4 cut(s) 64, 170, 245, 866
HphI GGTGA 4 cut(s) 850, 1055, 1124, 1172
Hpy166II GTNNAC 3 cut(s) 7, 509, 856
Hpy188I TCNGA 6 cut(s) 349, 457, 552, 579, 768, 1339
Hpy8I GTNNAC 3 cut(s) 7, 509, 856
HpyAV CCTTC 1 cut(s) 465
HpyCH4IV ACGT 1 cut(s) 773
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 41, 403, 472, 632
HpyF3I CTNAG 7 cut(s) 309, 467, 518, 765, 783, 940, 1152
HpySE526I ACGT 1 cut(s) 773
Hsp92II CATG 5 cut(s) 20, 35, 1145, 1198, 1207
Kpn2I TCCGGA 1 cut(s) 169
Ksp22I TGATCA 1 cut(s) 115
Kzo9I GATC 6 cut(s) 115, 349, 457, 544, 556, 1144
LmnI GCTCC 4 cut(s) 79, 259, 763, 1225
Lsp1109I GCAGC 3 cut(s) 247, 877, 1186
LweI GCATC 2 cut(s) 1042, 1267
MaeI CTAG 3 cut(s) 378, 483, 1031
MaeII ACGT 1 cut(s) 773
MaeIII GTNAC 3 cut(s) 360, 418, 1008
MalI GATC 6 cut(s) 117, 351, 459, 546, 558, 1146
MboI GATC 6 cut(s) 115, 349, 457, 544, 556, 1144
MboII GAAGA 4 cut(s) 236, 1100, 1127, 1307
MfeI CAATTG 1 cut(s) 273
MflI RGATCY 1 cut(s) 556
MhlI GDGCHC 2 cut(s) 779, 879
MlsI TGGCCA 1 cut(s) 406
MluCI AATT 6 cut(s) 175, 273, 582, 628, 954, 1164
MluNI TGGCCA 1 cut(s) 406
MlyI GAGTC 1 cut(s) 368
Mox20I TGGCCA 1 cut(s) 406
Mph1103I ATGCAT 1 cut(s) 1282
MroI TCCGGA 1 cut(s) 169
MscI TGGCCA 1 cut(s) 406
MseI TTAA 2 cut(s) 906, 1191
MslI CAYNNNNRTG 1 cut(s) 36
Msp20I TGGCCA 1 cut(s) 406
MspI CCGG 4 cut(s) 64, 170, 245, 866
MspR9I CCNGG 2 cut(s) 65, 867
MunI CAATTG 1 cut(s) 273
MvnI CGCG 1 cut(s) 831
MwoI GCNNNNNNNGC 5 cut(s) 32, 41, 403, 472, 632
NciI CCSGG 2 cut(s) 65, 867
NdeI CATATG 2 cut(s) 462, 1132
NdeII GATC 6 cut(s) 115, 349, 457, 544, 556, 1144
NlaIII CATG 5 cut(s) 20, 35, 1145, 1198, 1207
NlaIV GGNNCC 5 cut(s) 81, 261, 759, 845, 1062
NmuCI GTSAC 1 cut(s) 360
NsiI ATGCAT 1 cut(s) 1282
NspI RCATGY 2 cut(s) 20, 1207
PceI AGGCCT 1 cut(s) 397
PciI ACATGT 1 cut(s) 1203
PfeI GAWTC 7 cut(s) 133, 217, 285, 304, 344, 413, 563
PkrI GCNGC 4 cut(s) 84, 237, 892, 1176
PleI GAGTC 1 cut(s) 367
PpsI GAGTC 1 cut(s) 367
PscI ACATGT 1 cut(s) 1203
PspN4I GGNNCC 5 cut(s) 81, 261, 759, 845, 1062
PspPI GGNCC 1 cut(s) 509
PstNI CAGNNNCTG 2 cut(s) 422, 525
PsuI RGATCY 1 cut(s) 556
RsaI GTAC 1 cut(s) 982
RsaNI GTAC 1 cut(s) 981
RseI CAYNNNNRTG 1 cut(s) 36
SaqAI TTAA 2 cut(s) 906, 1191
SatI GCNGC 4 cut(s) 83, 236, 891, 1175
Sau3AI GATC 6 cut(s) 115, 349, 457, 544, 556, 1144
Sau96I GGNCC 1 cut(s) 509
SchI GAGTC 1 cut(s) 368
ScrFI CCNGG 2 cut(s) 65, 867
SduI GDGCHC 2 cut(s) 779, 879
SfaNI GCATC 2 cut(s) 1042, 1267
SfiI GGCCNNNNNGGCC 1 cut(s) 403
SinI GGWCC 1 cut(s) 509
SmiMI CAYNNNNRTG 1 cut(s) 36
SmlI CTYRAG 1 cut(s) 812
SmoI CTYRAG 1 cut(s) 812
Sse9I AATT 6 cut(s) 175, 273, 582, 628, 954, 1164
SseBI AGGCCT 1 cut(s) 397
SsiI CCGC 2 cut(s) 83, 1055
SspMI CTAG 3 cut(s) 378, 483, 1031
StuI AGGCCT 1 cut(s) 397
StyD4I CCNGG 2 cut(s) 63, 865
TaiI ACGT 1 cut(s) 776
TaqI TCGA 3 cut(s) 69, 592, 676
TasI AATT 6 cut(s) 175, 273, 582, 628, 954, 1164
TauI GCSGC 1 cut(s) 85
TfiI GAWTC 7 cut(s) 133, 217, 285, 304, 344, 413, 563
Tru1I TTAA 2 cut(s) 906, 1191
Tru9I TTAA 2 cut(s) 906, 1191
TscAI CASTG 3 cut(s) 295, 359, 1294
TseFI GTSAC 1 cut(s) 360
TseI GCWGC 3 cut(s) 235, 890, 1174
Tsp45I GTSAC 1 cut(s) 360
TspDTI ATGAA 5 cut(s) 20, 789, 966, 1173, 1308
TspGWI ACGGA 1 cut(s) 841
TspRI CASTG 3 cut(s) 295, 359, 1294
VpaK11BI GGWCC 1 cut(s) 509
XagI CCTNNNNNAGG 1 cut(s) 1254
XapI RAATTY 1 cut(s) 1164
XbaI TCTAGA 1 cut(s) 482
XceI RCATGY 2 cut(s) 20, 1207
XmiI GTMKAC 2 cut(s) 6, 855
XspI CTAG 3 cut(s) 378, 483, 1031
Zsp2I ATGCAT 1 cut(s) 1282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.