RchiOBHm_Chr2g0084531

General transcription factor 3C polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0006712
Physical Location & Seq
Reverse (-)
256405 .. 258814
2410 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46012

Sequence Viewer

Length: 873 bp
ATGGGAGTCGTAAAAGATGGGACGATATCTGGGTTTCTTCCTAGCAGCCAAGTTTTTGGTGTCCACTATCCTGGTTATCCTTCCTCCATCTCTCGAGCCATCGACACTCTTGGCGGCACCCAAGCAATCCATAAGGCTCACAGCTCACACTCCAACAACAACAACAGGTTGGAGCTCCATTTCCGCCATGATGACCCCTATTCGCATCCTGCATTTGCAGACCTTCGTCCCTGCAACAGTTTTCTGCTTAAAATATCTAAAACTAAGTCTGCTGGTGGACAAAACGATCAAGTTTCCGTGCAAGATGCACATAACTTGGATACTTCTATACAGTTAACTCAACCTGAACGTGACTTACTTGATGGCAAACAACCTGAAACTGATCAAGTAACCGTTTGCGCTGATATTGTTGCTCGTGTCCCACAGGCTTATCACTTTGATGGAATGGTAGACTACCAGCATGTCATTGCTGTTCATGCTGATGTTGCACGCAAGAGAAAGAGAAACCGGGTCGAGACAGAGGAGCCGCACTTTGACAGAGGTGGTCTTATGGATATTGATCAGGAGGATGTGATGATTCTATTGCCCCAACTTTTTGCACCCAAAGATGTTCCGGATAATTTAGTTGTTACTGTATCTCAAGATGGAAAACCATTAGGAGACTTGGTGTTTCCACCCTTCATTAATTTCGTATTATCTATCAGGTTGAAACCATCAGGGACATTGAGTGTAAAAAAGAATCAAGAAGAACCTGTGCAGCACCAACCGGAGATGGATATGGAGCCAGTTCTTGCAATTGACTTTGGAATCACTGATATCCTAATGGTTTATTTCAGTATGCTATTTATTACCTATAGCCAAGATTTATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tau95

Protein Analysis

290

Amino Acids

32.37

Weight (kDa)

5.35

Isoelectric Point (pI)

39.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tau95_N PF17682 20 - 154 5.8e-27 Tau95 Triple barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 116
AccI GTMKAC 1 cut(s) 450
AccIII TCCGGA 1 cut(s) 613
AciI CCGC 3 cut(s) 114, 184, 527
AgsI TTSAA 1 cut(s) 709
AjnI CCWGG 1 cut(s) 70
AluBI AGCT 2 cut(s) 144, 175
AluI AGCT 2 cut(s) 144, 175
Alw21I GWGCWC 1 cut(s) 177
Alw26I GTCTC 2 cut(s) 509, 654
Ama87I CYCGRG 1 cut(s) 93
Aor13HI TCCGGA 1 cut(s) 613
ApeKI GCWGC 2 cut(s) 45, 757
AseI ATTAAT 1 cut(s) 684
AspLEI GCGC 1 cut(s) 401
AsuC2I CCSGG 1 cut(s) 509
AvaI CYCGRG 1 cut(s) 93
BanI GGYRCC 1 cut(s) 116
BanII GRGCYC 1 cut(s) 177
BauI CACGAG 1 cut(s) 414
Bbv12I GWGCWC 1 cut(s) 177
BbvI GCAGC 2 cut(s) 57, 769
BccI CCATC 8 cut(s) 11, 95, 107, 356, 434, 638, 721, 766
BciT130I CCWGG 1 cut(s) 72
BciVI GTATCC 1 cut(s) 313
BclI TGATCA 2 cut(s) 382, 559
BcnI CCSGG 1 cut(s) 509
BcoDI GTCTC 2 cut(s) 509, 654
BfaI CTAG 1 cut(s) 42
BfmI CTRYAG 1 cut(s) 853
BfuI GTATCC 1 cut(s) 313
BisI GCNGC 4 cut(s) 46, 115, 527, 758
BlsI GCNGC 4 cut(s) 47, 116, 528, 759
Bme1390I CCNGG 2 cut(s) 72, 509
BmeT110I CYCGRG 1 cut(s) 93
BmiI GGNNCC 3 cut(s) 118, 525, 783
BmrFI CCNGG 2 cut(s) 72, 509
BmsI GCATC 2 cut(s) 214, 295
BoxI GACNNNNGTC 1 cut(s) 225
BpuEI CTTGAG 1 cut(s) 624
BpuMI CCSGG 1 cut(s) 509
BsaBI GATNNNNATC 1 cut(s) 558
BsaWI WCCGGW 2 cut(s) 613, 766
BsaXI ACNNNNNCTCC 2 cut(s) 651, 681
Bse1I ACTGG 1 cut(s) 785
Bse3DI GCAATG 1 cut(s) 465
Bse8I GATNNNNATC 1 cut(s) 558
BseAI TCCGGA 1 cut(s) 613
BseBI CCWGG 1 cut(s) 72
BseGI GGATG 2 cut(s) 205, 574
BseJI GATNNNNATC 1 cut(s) 558
BseMI GCAATG 1 cut(s) 465
BseNI ACTGG 1 cut(s) 785
BseRI GAGGAG 1 cut(s) 536
BseXI GCAGC 2 cut(s) 57, 769
BsgI GTGCAG 1 cut(s) 776
BshNI GGYRCC 1 cut(s) 116
BsiHKAI GWGCWC 1 cut(s) 177
BsiHKCI CYCGRG 1 cut(s) 93
BsiSI CCGG 3 cut(s) 508, 614, 767
BslFI GGGAC 4 cut(s) 34, 213, 404, 733
BsmAI GTCTC 2 cut(s) 509, 654
BsmFI GGGAC 4 cut(s) 34, 213, 404, 733
BsoBI CYCGRG 1 cut(s) 93
Bsp1286I GDGCHC 1 cut(s) 177
Bsp13I TCCGGA 1 cut(s) 613
Bsp143I GATC 3 cut(s) 286, 382, 559
BspACI CCGC 3 cut(s) 114, 184, 527
BspEI TCCGGA 1 cut(s) 613
BspLI GGNNCC 3 cut(s) 118, 525, 783
BspT107I GGYRCC 1 cut(s) 116
BsrDI GCAATG 1 cut(s) 465
BsrI ACTGG 1 cut(s) 785
BssMI GATC 3 cut(s) 286, 382, 559
BssSI CACGAG 1 cut(s) 414
Bst2BI CACGAG 1 cut(s) 414
Bst2UI CCWGG 1 cut(s) 72
Bst4CI ACNGT 4 cut(s) 239, 333, 394, 634
BstC8I GCNNGC 1 cut(s) 490
BstDEI CTNAG 1 cut(s) 264
BstF5I GGATG 2 cut(s) 205, 574
BstHHI GCGC 1 cut(s) 401
BstKTI GATC 3 cut(s) 289, 385, 562
BstMAI GTCTC 2 cut(s) 509, 654
BstMBI GATC 3 cut(s) 286, 382, 559
BstMWI GCNNNNNNNGC 2 cut(s) 476, 485
BstNI CCWGG 1 cut(s) 72
BstNSI RCATGY 1 cut(s) 464
BstPAI GACNNNNGTC 1 cut(s) 225
BstSCI CCNGG 2 cut(s) 70, 507
BstSFI CTRYAG 1 cut(s) 853
BstV1I GCAGC 2 cut(s) 57, 769
BstXI CCANNNNNNTGG 2 cut(s) 56, 71
BsuI GTATCC 1 cut(s) 313
BtsCI GGATG 2 cut(s) 205, 574
BtsIMutI CAGTG 1 cut(s) 810
Cac8I GCNNGC 1 cut(s) 490
CfoI GCGC 1 cut(s) 401
CviAII CATG 3 cut(s) 188, 461, 476
CviJI RGCY 9 cut(s) 48, 98, 137, 144, 175, 428, 526, 784, 858
CviKI_1 RGCY 9 cut(s) 48, 98, 137, 144, 175, 428, 526, 784, 858
DdeI CTNAG 1 cut(s) 264
DpnI GATC 3 cut(s) 288, 384, 561
DpnII GATC 3 cut(s) 286, 382, 559
EciI GGCGGA 1 cut(s) 173
Ecl136II GAGCTC 1 cut(s) 175
Eco24I GRGCYC 1 cut(s) 177
Eco32I GATATC 2 cut(s) 27, 817
Eco53kI GAGCTC 1 cut(s) 175
Eco88I CYCGRG 1 cut(s) 93
EcoICRI GAGCTC 1 cut(s) 175
EcoRII CCWGG 1 cut(s) 70
EcoRV GATATC 2 cut(s) 27, 817
EcoT38I GRGCYC 1 cut(s) 177
FaeI CATG 3 cut(s) 191, 464, 479
FaqI GGGAC 4 cut(s) 34, 213, 404, 733
FatI CATG 3 cut(s) 187, 460, 475
FbaI TGATCA 2 cut(s) 382, 559
FblI GTMKAC 1 cut(s) 450
Fnu4HI GCNGC 4 cut(s) 46, 115, 527, 758
FokI GGATG 2 cut(s) 192, 581
FriOI GRGCYC 1 cut(s) 177
Fsp4HI GCNGC 4 cut(s) 46, 115, 527, 758
FspBI CTAG 1 cut(s) 42
GlaI GCGC 1 cut(s) 400
GluI GCNGC 4 cut(s) 46, 115, 527, 758
HapII CCGG 3 cut(s) 508, 614, 767
HhaI GCGC 1 cut(s) 401
Hin1II CATG 3 cut(s) 191, 464, 479
Hin6I GCGC 1 cut(s) 399
HinP1I GCGC 1 cut(s) 399
HincII GTYRAC 1 cut(s) 336
HindII GTYRAC 1 cut(s) 336
HinfI GANTC 4 cut(s) 6, 577, 739, 807
HpaI GTTAAC 1 cut(s) 336
HpaII CCGG 3 cut(s) 508, 614, 767
Hpy166II GTNNAC 4 cut(s) 64, 278, 336, 451
Hpy188III TCNNGA 6 cut(s) 93, 514, 563, 614, 641, 743
Hpy8I GTNNAC 4 cut(s) 64, 278, 336, 451
HpyAV CCTTC 3 cut(s) 90, 233, 688
HpyCH4III ACNGT 4 cut(s) 239, 333, 394, 634
HpyCH4IV ACGT 1 cut(s) 349
HpyCH4V TGCA 9 cut(s) 212, 218, 234, 301, 308, 488, 599, 757, 794
HpyF10VI GCNNNNNNNGC 2 cut(s) 476, 485
HpyF3I CTNAG 1 cut(s) 264
HpySE526I ACGT 1 cut(s) 349
Hsp92II CATG 3 cut(s) 191, 464, 479
HspAI GCGC 1 cut(s) 399
Kpn2I TCCGGA 1 cut(s) 613
Ksp22I TGATCA 2 cut(s) 382, 559
KspAI GTTAAC 1 cut(s) 336
Kzo9I GATC 3 cut(s) 286, 382, 559
LmnI GCTCC 4 cut(s) 172, 180, 523, 781
Lsp1109I GCAGC 2 cut(s) 57, 769
LweI GCATC 2 cut(s) 214, 295
MaeI CTAG 1 cut(s) 42
MaeII ACGT 1 cut(s) 349
MaeIII GTNAC 3 cut(s) 350, 388, 628
MalI GATC 3 cut(s) 288, 384, 561
MboI GATC 3 cut(s) 286, 382, 559
MboII GAAGA 2 cut(s) 29, 758
MfeI CAATTG 1 cut(s) 795
MhlI GDGCHC 1 cut(s) 177
MluCI AATT 3 cut(s) 619, 685, 795
MlyI GAGTC 1 cut(s) 15
MmeI TCCRAC 2 cut(s) 150, 177
MnlI CCTC 4 cut(s) 94, 514, 533, 559
MroI TCCGGA 1 cut(s) 613
MseI TTAA 4 cut(s) 249, 335, 684, 871
MslI CAYNNNNRTG 2 cut(s) 438, 480
MspI CCGG 3 cut(s) 508, 614, 767
MspR9I CCNGG 2 cut(s) 72, 509
MunI CAATTG 1 cut(s) 795
MvaI CCWGG 1 cut(s) 72
MwoI GCNNNNNNNGC 2 cut(s) 476, 485
NciI CCSGG 1 cut(s) 509
NdeII GATC 3 cut(s) 286, 382, 559
NlaIII CATG 3 cut(s) 191, 464, 479
NlaIV GGNNCC 3 cut(s) 118, 525, 783
NmuCI GTSAC 1 cut(s) 350
NspI RCATGY 1 cut(s) 464
PaeR7I CTCGAG 1 cut(s) 93
PfeI GAWTC 3 cut(s) 577, 739, 807
PkrI GCNGC 4 cut(s) 47, 116, 528, 759
PleI GAGTC 1 cut(s) 14
PpsI GAGTC 1 cut(s) 14
PshAI GACNNNNGTC 1 cut(s) 225
PshBI ATTAAT 1 cut(s) 684
Psp124BI GAGCTC 1 cut(s) 177
Psp6I CCWGG 1 cut(s) 70
PspGI CCWGG 1 cut(s) 70
PspN4I GGNNCC 3 cut(s) 118, 525, 783
PsrI GAACNNNNNNTAC 2 cut(s) 339, 371
RseI CAYNNNNRTG 2 cut(s) 438, 480
SacI GAGCTC 1 cut(s) 177
SaqAI TTAA 4 cut(s) 249, 335, 684, 871
SatI GCNGC 4 cut(s) 46, 115, 527, 758
Sau3AI GATC 3 cut(s) 286, 382, 559
SchI GAGTC 1 cut(s) 15
ScrFI CCNGG 2 cut(s) 72, 509
SduI GDGCHC 1 cut(s) 177
SfaNI GCATC 2 cut(s) 214, 295
SfcI CTRYAG 1 cut(s) 853
Sfr274I CTCGAG 1 cut(s) 93
SlaI CTCGAG 1 cut(s) 93
SmiMI CAYNNNNRTG 2 cut(s) 438, 480
SmlI CTYRAG 2 cut(s) 93, 639
SmoI CTYRAG 2 cut(s) 93, 639
Sse9I AATT 3 cut(s) 619, 685, 795
SsiI CCGC 3 cut(s) 114, 184, 527
SspMI CTAG 1 cut(s) 42
SstI GAGCTC 1 cut(s) 177
StyD4I CCNGG 2 cut(s) 70, 507
TaaI ACNGT 4 cut(s) 239, 333, 394, 634
TaiI ACGT 1 cut(s) 352
TaqI TCGA 3 cut(s) 94, 102, 513
TasI AATT 3 cut(s) 619, 685, 795
TauI GCSGC 2 cut(s) 117, 529
TfiI GAWTC 3 cut(s) 577, 739, 807
Tru1I TTAA 4 cut(s) 249, 335, 684, 871
Tru9I TTAA 4 cut(s) 249, 335, 684, 871
TscAI CASTG 1 cut(s) 817
TseFI GTSAC 1 cut(s) 350
TseI GCWGC 2 cut(s) 45, 757
Tsp45I GTSAC 1 cut(s) 350
TspDTI ATGAA 2 cut(s) 464, 670
TspGWI ACGGA 1 cut(s) 286
TspRI CASTG 1 cut(s) 817
VspI ATTAAT 1 cut(s) 684
XceI RCATGY 1 cut(s) 464
XhoI CTCGAG 1 cut(s) 93
XmiI GTMKAC 1 cut(s) 450
XspI CTAG 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.