Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005247

Physical Location & Seq

Genomic Coordinates Reverse (-)

8369141 .. 8370119

Gene Structure 979 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G24510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGTCGACCAGTGAGCTCGCCTGCACTTATGCTGCTCTCATCCTCCACGATGATGGAATCGAGATCACCGCTGAGAACATATCAAAACTGGTGAAAACAGCCAACGTGAATGTCGAGTCATACTGGCCTAGCCTCTTTGCTAAGCTATGTGAGAAGAAGAACATCGACGATCTCATCATGAATGTAGGAGCCGGTGGTTGTGGTGTGGCTCGTCCAGTTACCACTGCTGCTCCTACCGCTTCTCAATCAGTCTCTATTCCCGAGGAGAAGAAGAATGAGATGGAGGTGATCAAAGAAGAGAGTGAAGATGACATGATAATCGGATTATTTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0008047 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009893 GO:0009987 GO:0010467 GO:0010562 GO:0010604 GO:0015934 GO:0016020 GO:0019207 GO:0019209 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0022625 GO:0022626 GO:0030234 GO:0030295 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0034641 GO:0034645 GO:0042325 GO:0042327 GO:0042788 GO:0043043 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043549 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044877 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071944 GO:0080090 GO:0098772 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

111

Amino Acids

11.98

Weight (kDa)

4.41

Isoelectric Point (pI)

62.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_60s	PF00428	21 - 110	6.6e-26	60s Acidic ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0005247)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24510
fragaria_vesca	FvH4_3g19530 FvH4_3g19540 FvH4_3g19560 FvH4_4g09050 FvH4_7g32851
malus_domestica	MD01G1228000.v1.1 MD07G1298500.v1.1
prunus_persica	Prupe.2G318300_v2.0.a1
pyrus_communis	pycom07g27090
rosa_chinensis	RchiOBHm_Chr1g0382801 RchiOBHm_Chr5g0032771
rosa_laevigata	RLG00000026158 RLG00000033427
rosa_multiflora	Rmu_sc0003389.1_g000003
rosa_roxburghii	Rroxscaffold_1G00047330 Rroxscaffold_1G00047790 Rroxscaffold_4G00277890 Rroxscaffold_5G00373420
rosa_rugosa	Rorug04G0253800 Rorug05G0133600
rosa_samantha	Rh1AG461300 Rh1BG418000 Rh1CG431800 Rh1DG450200 Rh5AG226400 Rh5CG255200
rosa_wichuraiana	Rw1G041040 Rw5G020760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	2 cut(s)	69, 237
AluBI	AGCT	2 cut(s)	16, 145
AluI	AGCT	2 cut(s)	16, 145
Alw21I	GWGCWC	1 cut(s)	18
Alw26I	GTCTC	1 cut(s)	256
Ama87I	CYCGRG	1 cut(s)	260
AoxI	GGCC	1 cut(s)	125
ApeKI	GCWGC	2 cut(s)	32, 227
AsuHPI	GGTGA	3 cut(s)	58, 103, 298
AvaI	CYCGRG	1 cut(s)	260
BanII	GRGCYC	1 cut(s)	18
Bbv12I	GWGCWC	1 cut(s)	18
BbvI	GCAGC	2 cut(s)	19, 214
BccI	CCATC	2 cut(s)	47, 274
BclI	TGATCA	1 cut(s)	288
BcoDI	GTCTC	1 cut(s)	256
BfaI	CTAG	2 cut(s)	129, 334
BisI	GCNGC	2 cut(s)	33, 228
BlpI	GCTNAGC	1 cut(s)	141
BlsI	GCNGC	2 cut(s)	34, 229
BmeT110I	CYCGRG	1 cut(s)	260
BmiI	GGNNCC	1 cut(s)	190
Bpu1102I	GCTNAGC	1 cut(s)	141
BsaJI	CCNNGG	1 cut(s)	261
BsaXI	ACNNNNNCTCC	2 cut(s)	214, 244
Bse118I	RCCGGY	1 cut(s)	191
Bse1I	ACTGG	4 cut(s)	9, 93, 128, 215
BseDI	CCNNGG	1 cut(s)	261
BseGI	GGATG	1 cut(s)	39
BseMII	CTCAG	1 cut(s)	63
BseNI	ACTGG	4 cut(s)	9, 93, 128, 215
BseRI	GAGGAG	1 cut(s)	278
BseXI	GCAGC	2 cut(s)	19, 214
BsgI	GTGCAG	1 cut(s)	7
BshFI	GGCC	1 cut(s)	127
BsiHKAI	GWGCWC	1 cut(s)	18
BsiHKCI	CYCGRG	1 cut(s)	260
BsiSI	CCGG	1 cut(s)	192
BsmAI	GTCTC	1 cut(s)	256
BsnI	GGCC	1 cut(s)	127
BsoBI	CYCGRG	1 cut(s)	260
Bsp1286I	GDGCHC	1 cut(s)	18
Bsp143I	GATC	3 cut(s)	63, 169, 288
Bsp1720I	GCTNAGC	1 cut(s)	141
BspACI	CCGC	2 cut(s)	69, 237
BspANI	GGCC	1 cut(s)	127
BspCNI	CTCAG	1 cut(s)	64
BspHI	TCATGA	1 cut(s)	177
BspLI	GGNNCC	1 cut(s)	190
BsrFI	RCCGGY	1 cut(s)	191
BsrI	ACTGG	4 cut(s)	9, 93, 128, 215
BssAI	RCCGGY	1 cut(s)	191
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	3 cut(s)	63, 169, 288
Bst6I	CTCTTC	1 cut(s)	291
BstC8I	GCNNGC	2 cut(s)	18, 22
BstDEI	CTNAG	2 cut(s)	72, 141
BstF5I	GGATG	1 cut(s)	39
BstKTI	GATC	3 cut(s)	66, 172, 291
BstMAI	GTCTC	1 cut(s)	256
BstMBI	GATC	3 cut(s)	63, 169, 288
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstV1I	GCAGC	2 cut(s)	19, 214
BstXI	CCANNNNNNTGG	1 cut(s)	53
BsuRI	GGCC	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	39
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	2 cut(s)	16, 222
Cac8I	GCNNGC	2 cut(s)	18, 22
CciI	TCATGA	1 cut(s)	177
Cfr10I	RCCGGY	1 cut(s)	191
CviAII	CATG	2 cut(s)	178, 313
CviJI	RGCY	7 cut(s)	16, 101, 127, 132, 145, 191, 209
CviKI_1	RGCY	7 cut(s)	16, 101, 127, 132, 145, 191, 209
DdeI	CTNAG	2 cut(s)	72, 141
DpnI	GATC	3 cut(s)	65, 171, 290
DpnII	GATC	3 cut(s)	63, 169, 288
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Ecl136II	GAGCTC	1 cut(s)	16
Eco24I	GRGCYC	1 cut(s)	18
Eco53kI	GAGCTC	1 cut(s)	16
Eco88I	CYCGRG	1 cut(s)	260
EcoICRI	GAGCTC	1 cut(s)	16
EcoT38I	GRGCYC	1 cut(s)	18
FaeI	CATG	2 cut(s)	181, 316
FaiI	YATR	6 cut(s)	30, 80, 121, 148, 179, 314
FatI	CATG	2 cut(s)	177, 312
FbaI	TGATCA	1 cut(s)	288
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	2 cut(s)	33, 228
FokI	GGATG	1 cut(s)	26
FriOI	GRGCYC	1 cut(s)	18
Fsp4HI	GCNGC	2 cut(s)	33, 228
FspBI	CTAG	2 cut(s)	129, 334
GluI	GCNGC	2 cut(s)	33, 228
HaeIII	GGCC	1 cut(s)	127
HapII	CCGG	1 cut(s)	192
Hin1II	CATG	2 cut(s)	181, 316
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	2 cut(s)	57, 116
HpaII	CCGG	1 cut(s)	192
HphI	GGTGA	3 cut(s)	58, 103, 298
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	1 cut(s)	323
Hpy188III	TCNNGA	3 cut(s)	61, 178, 260
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	1 cut(s)	170
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	1 cut(s)	24
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
HpyF3I	CTNAG	2 cut(s)	72, 141
HpySE526I	ACGT	1 cut(s)	105
Hsp92II	CATG	2 cut(s)	181, 316
Ksp22I	TGATCA	1 cut(s)	288
Kzo9I	GATC	3 cut(s)	63, 169, 288
LmnI	GCTCC	2 cut(s)	188, 235
LpnPI	CCDG	6 cut(s)	22, 34, 74, 109, 205, 228
Lsp1109I	GCAGC	2 cut(s)	19, 214
MaeI	CTAG	2 cut(s)	129, 334
MaeII	ACGT	1 cut(s)	105
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	3 cut(s)	65, 171, 290
MboI	GATC	3 cut(s)	63, 169, 288
MboII	GAAGA	6 cut(s)	166, 169, 280, 283, 308, 317
MhlI	GDGCHC	1 cut(s)	18
MlyI	GAGTC	1 cut(s)	125
MnlI	CCTC	4 cut(s)	53, 143, 256, 277
MslI	CAYNNNNRTG	1 cut(s)	51
MspA1I	CMGCKG	1 cut(s)	71
MspI	CCGG	1 cut(s)	192
MwoI	GCNNNNNNNGC	1 cut(s)	236
NdeII	GATC	3 cut(s)	63, 169, 288
NlaIII	CATG	2 cut(s)	181, 316
NlaIV	GGNNCC	1 cut(s)	190
PagI	TCATGA	1 cut(s)	177
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PfeI	GAWTC	1 cut(s)	57
PkrI	GCNGC	2 cut(s)	34, 229
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
Psp124BI	GAGCTC	1 cut(s)	18
PspN4I	GGNNCC	1 cut(s)	190
RseI	CAYNNNNRTG	1 cut(s)	51
SacI	GAGCTC	1 cut(s)	18
SalI	GTCGAC	1 cut(s)	4
SatI	GCNGC	2 cut(s)	33, 228
Sau3AI	GATC	3 cut(s)	63, 169, 288
SchI	GAGTC	1 cut(s)	125
SduI	GDGCHC	1 cut(s)	18
SetI	ASST	4 cut(s)	18, 108, 147, 288
SmiMI	CAYNNNNRTG	1 cut(s)	51
SsiI	CCGC	2 cut(s)	69, 237
SspMI	CTAG	2 cut(s)	129, 334
SstI	GAGCTC	1 cut(s)	18
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	4 cut(s)	5, 60, 114, 165
TfiI	GAWTC	1 cut(s)	57
TscAI	CASTG	2 cut(s)	16, 229
TseI	GCWGC	2 cut(s)	32, 227
TspDTI	ATGAA	1 cut(s)	194
TspRI	CASTG	2 cut(s)	16, 229
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	2 cut(s)	129, 334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.