Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0005247

Physical Location & Seq

Genomic Coordinates Forward (+)

31777928 .. 31779777

Gene Structure 1850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1228000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGTCGACCGCCGAGCTTGCTTGCTCCTACGCCGCCATGATCCTTCAGGATGATGGCATCGCCGTCACTGCTGAGAAGATCGCGGCCTTGGTGAAATCGGCTAATGTGTCGGTGGAGTCATACTGGCCTGGCCTCTTTGCCAAGCTTGCAGAAAATAAAAACCTCGAGGACCTTTTCTTGAATGCTTGCGCTAGTGGTGGTTCAGCTCCCGTAGCTGTGACTGCTTCTGCTGGTGGTGCAGGTGGTGCTGCCAGTGCCGCTGCTCCTGCAGTTGAGGAGAAGAAGGAAGAAGCAAAGGAAGAGAGCGATGATGACATGGGATTCAGCTTGTTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0008047 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009893 GO:0009987 GO:0010467 GO:0010562 GO:0010604 GO:0015934 GO:0016020 GO:0019207 GO:0019209 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0022625 GO:0022626 GO:0030234 GO:0030295 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0034641 GO:0034645 GO:0042325 GO:0042327 GO:0042788 GO:0043043 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043549 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044877 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071944 GO:0080090 GO:0098772 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

113

Amino Acids

11.32

Weight (kDa)

4.16

Isoelectric Point (pI)

50.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_60s	PF00428	22 - 111	3.4e-24	60s Acidic ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005247)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24510
fragaria_vesca	FvH4_3g19530 FvH4_3g19540 FvH4_3g19560 FvH4_4g09050 FvH4_7g32851
malus_domestica	MD01G1228000.v1.1 MD07G1298500.v1.1
prunus_persica	Prupe.2G318300_v2.0.a1
pyrus_communis	pycom07g27090
rosa_chinensis	RchiOBHm_Chr1g0382801 RchiOBHm_Chr5g0032771
rosa_laevigata	RLG00000026158 RLG00000033427
rosa_multiflora	Rmu_sc0003389.1_g000003
rosa_roxburghii	Rroxscaffold_1G00047330 Rroxscaffold_1G00047790 Rroxscaffold_4G00277890 Rroxscaffold_5G00373420
rosa_rugosa	Rorug04G0253800 Rorug05G0133600
rosa_samantha	Rh1AG461300 Rh1BG418000 Rh1CG431800 Rh1DG450200 Rh5AG226400 Rh5CG255200
rosa_wichuraiana	Rw1G041040 Rw5G020760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	230
AbsI	CCTCGAGG	1 cut(s)	164
Acc36I	ACCTGC	1 cut(s)	230
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	1 cut(s)	83
AciI	CCGC	4 cut(s)	9, 33, 83, 258
AclWI	GGATC	1 cut(s)	34
AcuI	CTGAAG	1 cut(s)	29
AgsI	TTSAA	1 cut(s)	181
AjnI	CCWGG	1 cut(s)	127
AluBI	AGCT	5 cut(s)	16, 145, 206, 215, 327
AluI	AGCT	5 cut(s)	16, 145, 206, 215, 327
AlwI	GGATC	1 cut(s)	34
Ama87I	CYCGRG	1 cut(s)	164
AoxI	GGCC	3 cut(s)	84, 125, 130
ApeKI	GCWGC	2 cut(s)	248, 260
AspLEI	GCGC	1 cut(s)	191
AspS9I	GGNCC	1 cut(s)	169
AsuHPI	GGTGA	1 cut(s)	103
AvaI	CYCGRG	1 cut(s)	164
AvaII	GGWCC	1 cut(s)	169
BbvI	GCAGC	2 cut(s)	235, 247
BccI	CCATC	1 cut(s)	47
BceAI	ACGGC	1 cut(s)	47
BciT130I	CCWGG	1 cut(s)	129
BfaI	CTAG	1 cut(s)	192
BfmI	CTRYAG	1 cut(s)	267
BfuAI	ACCTGC	1 cut(s)	230
BisI	GCNGC	5 cut(s)	33, 84, 249, 258, 261
BlsI	GCNGC	5 cut(s)	34, 85, 250, 259, 262
Bme1390I	CCNGG	1 cut(s)	129
Bme18I	GGWCC	1 cut(s)	169
BmeT110I	CYCGRG	1 cut(s)	164
BmgT120I	GGNCC	1 cut(s)	169
BmrFI	CCNGG	1 cut(s)	129
BmsI	GCATC	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	87
Bse1I	ACTGG	2 cut(s)	128, 252
BseBI	CCWGG	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	87
BseGI	GGATG	1 cut(s)	55
BseMII	CTCAG	1 cut(s)	63
BseNI	ACTGG	2 cut(s)	128, 252
BseRI	GAGGAG	1 cut(s)	290
BseXI	GCAGC	2 cut(s)	235, 247
BsgI	GTGCAG	1 cut(s)	258
Bsh1236I	CGCG	1 cut(s)	83
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	3 cut(s)	86, 127, 132
BsiEI	CGRYCG	1 cut(s)	9
BsiHKCI	CYCGRG	1 cut(s)	164
BsmI	GAATGC	1 cut(s)	187
BsnI	GGCC	3 cut(s)	86, 127, 132
BsoBI	CYCGRG	1 cut(s)	164
Bsp143I	GATC	2 cut(s)	39, 78
BspACI	CCGC	4 cut(s)	9, 33, 83, 258
BspANI	GGCC	3 cut(s)	86, 127, 132
BspCNI	CTCAG	1 cut(s)	64
BspFNI	CGCG	1 cut(s)	83
BspMAI	CTGCAG	1 cut(s)	271
BspMI	ACCTGC	1 cut(s)	230
BspPI	GGATC	1 cut(s)	34
BsrI	ACTGG	2 cut(s)	128, 252
BssECI	CCNNGG	1 cut(s)	87
BssMI	GATC	2 cut(s)	39, 78
BssT1I	CCWWGG	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	129
Bst6I	CTCTTC	1 cut(s)	294
BstAPI	GCANNNNNTGC	1 cut(s)	245
BstC8I	GCNNGC	4 cut(s)	18, 22, 147, 187
BstDEI	CTNAG	1 cut(s)	72
BstF5I	GGATG	1 cut(s)	55
BstFNI	CGCG	1 cut(s)	83
BstHHI	GCGC	1 cut(s)	191
BstKTI	GATC	2 cut(s)	42, 81
BstMBI	GATC	2 cut(s)	39, 78
BstMCI	CGRYCG	1 cut(s)	9
BstNI	CCWGG	1 cut(s)	129
BstSCI	CCNGG	1 cut(s)	127
BstSFI	CTRYAG	1 cut(s)	267
BstUI	CGCG	1 cut(s)	83
BstV1I	GCAGC	2 cut(s)	235, 247
BsuRI	GGCC	3 cut(s)	86, 127, 132
BtgZI	GCGATG	2 cut(s)	43, 321
BtsCI	GGATG	1 cut(s)	55
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	2 cut(s)	66, 259
BveI	ACCTGC	1 cut(s)	230
Cac8I	GCNNGC	4 cut(s)	18, 22, 147, 187
CfoI	GCGC	1 cut(s)	191
Cfr13I	GGNCC	1 cut(s)	169
CviAII	CATG	2 cut(s)	37, 316
CviJI	RGCY	9 cut(s)	16, 86, 101, 127, 132, 145, 206, 215, 327
CviKI_1	RGCY	9 cut(s)	16, 86, 101, 127, 132, 145, 206, 215, 327
DdeI	CTNAG	1 cut(s)	72
DpnI	GATC	2 cut(s)	41, 80
DpnII	GATC	2 cut(s)	39, 78
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
Eco130I	CCWWGG	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	169
Eco57I	CTGAAG	1 cut(s)	29
Eco88I	CYCGRG	1 cut(s)	164
EcoO109I	RGGNCCY	1 cut(s)	169
EcoRII	CCWGG	1 cut(s)	127
EcoT14I	CCWWGG	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	2 cut(s)	40, 319
FaiI	YATR	3 cut(s)	38, 121, 317
FatI	CATG	2 cut(s)	36, 315
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	5 cut(s)	33, 84, 249, 258, 261
FokI	GGATG	1 cut(s)	62
Fsp4HI	GCNGC	5 cut(s)	33, 84, 249, 258, 261
FspBI	CTAG	1 cut(s)	192
GlaI	GCGC	1 cut(s)	190
GluI	GCNGC	5 cut(s)	33, 84, 249, 258, 261
HaeIII	GGCC	3 cut(s)	86, 127, 132
HhaI	GCGC	1 cut(s)	191
Hin1II	CATG	2 cut(s)	40, 319
Hin6I	GCGC	1 cut(s)	189
HinP1I	GCGC	1 cut(s)	189
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HindIII	AAGCTT	1 cut(s)	143
HinfI	GANTC	2 cut(s)	116, 321
HphI	GGTGA	1 cut(s)	103
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188III	TCNNGA	2 cut(s)	47, 178
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	2 cut(s)	53, 277
HpyCH4V	TGCA	3 cut(s)	149, 239, 269
HpyF3I	CTNAG	1 cut(s)	72
Hsp92II	CATG	2 cut(s)	40, 319
HspAI	GCGC	1 cut(s)	189
Kzo9I	GATC	2 cut(s)	39, 78
LmnI	GCTCC	3 cut(s)	29, 211, 268
LpnPI	CCDG	8 cut(s)	32, 109, 114, 141, 216, 225, 265, 279
Lsp1109I	GCAGC	2 cut(s)	235, 247
LweI	GCATC	1 cut(s)	66
MaeI	CTAG	1 cut(s)	192
MaeIII	GTNAC	2 cut(s)	64, 217
MalI	GATC	2 cut(s)	41, 80
MboI	GATC	2 cut(s)	39, 78
MboII	GAAGA	4 cut(s)	88, 292, 299, 311
MlyI	GAGTC	1 cut(s)	125
MnlI	CCTC	4 cut(s)	143, 160, 173, 268
MspA1I	CMGCKG	1 cut(s)	260
MspR9I	CCNGG	1 cut(s)	129
Mva1269I	GAATGC	1 cut(s)	187
MvaI	CCWGG	1 cut(s)	129
MvnI	CGCG	1 cut(s)	83
NdeII	GATC	2 cut(s)	39, 78
NlaIII	CATG	2 cut(s)	40, 319
NmeAIII	GCCGAG	1 cut(s)	37
NmuCI	GTSAC	2 cut(s)	64, 217
PaeR7I	CTCGAG	1 cut(s)	164
PaqCI	CACCTGC	1 cut(s)	230
PctI	GAATGC	1 cut(s)	187
PfeI	GAWTC	1 cut(s)	321
PkrI	GCNGC	5 cut(s)	34, 85, 250, 259, 262
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
PpuMI	RGGWCCY	1 cut(s)	169
Psp5II	RGGWCCY	1 cut(s)	169
Psp6I	CCWGG	1 cut(s)	127
PspGI	CCWGG	1 cut(s)	127
PspPI	GGNCC	1 cut(s)	169
PspPPI	RGGWCCY	1 cut(s)	169
PspXI	VCTCGAGB	1 cut(s)	164
PstI	CTGCAG	1 cut(s)	271
SalI	GTCGAC	1 cut(s)	4
SatI	GCNGC	5 cut(s)	33, 84, 249, 258, 261
Sau3AI	GATC	2 cut(s)	39, 78
Sau96I	GGNCC	1 cut(s)	169
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	1 cut(s)	129
SetI	ASST	8 cut(s)	18, 147, 165, 174, 208, 217, 244, 329
SfaNI	GCATC	1 cut(s)	66
SfcI	CTRYAG	1 cut(s)	267
Sfr274I	CTCGAG	1 cut(s)	164
SinI	GGWCC	1 cut(s)	169
SlaI	CTCGAG	1 cut(s)	164
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
SsiI	CCGC	4 cut(s)	9, 33, 83, 258
SspMI	CTAG	1 cut(s)	192
StyD4I	CCNGG	1 cut(s)	127
StyI	CCWWGG	1 cut(s)	87
TaqI	TCGA	2 cut(s)	5, 165
TauI	GCSGC	3 cut(s)	35, 86, 260
TfiI	GAWTC	1 cut(s)	321
TscAI	CASTG	2 cut(s)	73, 259
TseFI	GTSAC	2 cut(s)	64, 217
TseI	GCWGC	2 cut(s)	248, 260
Tsp45I	GTSAC	2 cut(s)	64, 217
TspRI	CASTG	2 cut(s)	73, 259
VpaK11BI	GGWCC	1 cut(s)	169
XhoI	CTCGAG	1 cut(s)	164
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.