Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0005247

Physical Location & Seq

Genomic Coordinates Forward (+)

29774894 .. 29776061

Gene Structure 1168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G318300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGTCGACCGCTGAGCTTGCTTGTTCCTACGCCGCCATGATTCTTCATGACGACGGCATCGCAATCACATCAGAGAAGATTGCCGCCTTGGTGAGATCAGCTAATGTGGCAGTGGAATCATACTGGCCAAGTCTCTTTGCCAAGCTTGCTGAGAAGAGGAGCCTTGAGGACCTTATTTTGAATGCTGGCTCCGGTGGCTGTTCTGCTCCCGTAACTGTGGCTGCTGCTCCTGGTGGTGCTGCCAGTGCTGCTGCTCCTGCAGTTGAGGAGAAGAAGGAAGAACCCAAAGAAGAGAGTGACGACGACATGGGATTCAGCTTGTTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0008047 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009893 GO:0009987 GO:0010467 GO:0010562 GO:0010604 GO:0015934 GO:0016020 GO:0019207 GO:0019209 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0022625 GO:0022626 GO:0030234 GO:0030295 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0034641 GO:0034645 GO:0042325 GO:0042327 GO:0042788 GO:0043043 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043549 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044877 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071944 GO:0080090 GO:0098772 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

110

Amino Acids

11.22

Weight (kDa)

4.36

Isoelectric Point (pI)

61.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005247)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24510
fragaria_vesca	FvH4_3g19530 FvH4_3g19540 FvH4_3g19560 FvH4_4g09050 FvH4_7g32851
malus_domestica	MD01G1228000.v1.1 MD07G1298500.v1.1
prunus_persica	Prupe.2G318300_v2.0.a1
pyrus_communis	pycom07g27090
rosa_chinensis	RchiOBHm_Chr1g0382801 RchiOBHm_Chr5g0032771
rosa_laevigata	RLG00000026158 RLG00000033427
rosa_multiflora	Rmu_sc0003389.1_g000003
rosa_roxburghii	Rroxscaffold_1G00047330 Rroxscaffold_1G00047790 Rroxscaffold_4G00277890 Rroxscaffold_5G00373420
rosa_rugosa	Rorug04G0253800 Rorug05G0133600
rosa_samantha	Rh1AG461300 Rh1BG418000 Rh1CG431800 Rh1DG450200 Rh5AG226400 Rh5CG255200
rosa_wichuraiana	Rw1G041040 Rw5G020760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	3 cut(s)	9, 33, 84
AcoI	YGGCCR	1 cut(s)	125
AgsI	TTSAA	1 cut(s)	181
AjnI	CCWGG	1 cut(s)	229
AluBI	AGCT	4 cut(s)	16, 101, 145, 318
AluI	AGCT	4 cut(s)	16, 101, 145, 318
Alw26I	GTCTC	1 cut(s)	137
AoxI	GGCC	1 cut(s)	125
ApeKI	GCWGC	5 cut(s)	221, 224, 239, 248, 251
AspS9I	GGNCC	1 cut(s)	169
AsuHPI	GGTGA	1 cut(s)	103
AvaII	GGWCC	1 cut(s)	169
BalI	TGGCCA	1 cut(s)	127
BbvI	GCAGC	5 cut(s)	208, 211, 226, 235, 238
BceAI	ACGGC	1 cut(s)	70
BciT130I	CCWGG	1 cut(s)	231
BcoDI	GTCTC	1 cut(s)	137
BfmI	CTRYAG	1 cut(s)	258
BisI	GCNGC	7 cut(s)	33, 84, 222, 225, 240, 249, 252
BlpI	GCTNAGC	1 cut(s)	12
BlsI	GCNGC	7 cut(s)	34, 85, 223, 226, 241, 250, 253
Bme1390I	CCNGG	1 cut(s)	231
Bme18I	GGWCC	1 cut(s)	169
BmgT120I	GGNCC	1 cut(s)	169
BmiI	GGNNCC	2 cut(s)	161, 190
BmrFI	CCNGG	1 cut(s)	231
BmsI	GCATC	1 cut(s)	66
Bpu1102I	GCTNAGC	1 cut(s)	12
BpuEI	CTTGAG	1 cut(s)	185
BsaJI	CCNNGG	1 cut(s)	87
BsaWI	WCCGGW	1 cut(s)	191
Bse1I	ACTGG	2 cut(s)	128, 243
BseBI	CCWGG	1 cut(s)	231
BseDI	CCNNGG	1 cut(s)	87
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	2 cut(s)	128, 243
BseRI	GAGGAG	2 cut(s)	172, 281
BseXI	GCAGC	5 cut(s)	208, 211, 226, 235, 238
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	1 cut(s)	127
BsiEI	CGRYCG	1 cut(s)	9
BsiSI	CCGG	1 cut(s)	192
BsmAI	GTCTC	1 cut(s)	137
BsmI	GAATGC	1 cut(s)	187
BsnI	GGCC	1 cut(s)	127
Bsp143I	GATC	1 cut(s)	95
Bsp1720I	GCTNAGC	1 cut(s)	12
BspACI	CCGC	3 cut(s)	9, 33, 84
BspANI	GGCC	1 cut(s)	127
BspCNI	CTCAG	2 cut(s)	4, 142
BspHI	TCATGA	1 cut(s)	46
BspLI	GGNNCC	2 cut(s)	161, 190
BspMAI	CTGCAG	1 cut(s)	262
BsrI	ACTGG	2 cut(s)	128, 243
BssECI	CCNNGG	1 cut(s)	87
BssMI	GATC	1 cut(s)	95
BssT1I	CCWWGG	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	231
Bst4CI	ACNGT	1 cut(s)	217
Bst6I	CTCTTC	2 cut(s)	149, 285
BstC8I	GCNNGC	3 cut(s)	18, 147, 187
BstDEI	CTNAG	2 cut(s)	12, 150
BstKTI	GATC	1 cut(s)	98
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	1 cut(s)	95
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	7 cut(s)	17, 107, 146, 195, 245, 248, 257
BstNI	CCWGG	1 cut(s)	231
BstSCI	CCNGG	1 cut(s)	229
BstSFI	CTRYAG	1 cut(s)	258
BstV1I	GCAGC	5 cut(s)	208, 211, 226, 235, 238
BsuRI	GGCC	1 cut(s)	127
BtgZI	GCGATG	1 cut(s)	43
BtsI	GCAGTG	1 cut(s)	117
BtsIMutI	CAGTG	2 cut(s)	117, 250
Cac8I	GCNNGC	3 cut(s)	18, 147, 187
CciI	TCATGA	1 cut(s)	46
Cfr13I	GGNCC	1 cut(s)	169
CviAII	CATG	3 cut(s)	37, 47, 307
CviJI	RGCY	9 cut(s)	16, 101, 127, 145, 162, 189, 198, 221, 318
CviKI_1	RGCY	9 cut(s)	16, 101, 127, 145, 162, 189, 198, 221, 318
DdeI	CTNAG	2 cut(s)	12, 150
DpnI	GATC	1 cut(s)	97
DpnII	GATC	1 cut(s)	95
EaeI	YGGCCR	1 cut(s)	125
Eam1104I	CTCTTC	2 cut(s)	149, 285
EarI	CTCTTC	2 cut(s)	149, 285
Eco130I	CCWWGG	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	169
EcoO109I	RGGNCCY	1 cut(s)	169
EcoRII	CCWGG	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	3 cut(s)	40, 50, 310
FaiI	YATR	4 cut(s)	38, 48, 121, 308
FatI	CATG	3 cut(s)	36, 46, 306
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	7 cut(s)	33, 84, 222, 225, 240, 249, 252
Fsp4HI	GCNGC	7 cut(s)	33, 84, 222, 225, 240, 249, 252
GluI	GCNGC	7 cut(s)	33, 84, 222, 225, 240, 249, 252
HaeIII	GGCC	1 cut(s)	127
HapII	CCGG	1 cut(s)	192
Hin1II	CATG	3 cut(s)	40, 50, 310
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HindIII	AAGCTT	1 cut(s)	143
HinfI	GANTC	3 cut(s)	40, 116, 312
HpaII	CCGG	1 cut(s)	192
HphI	GGTGA	1 cut(s)	103
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	1 cut(s)	73
Hpy188III	TCNNGA	1 cut(s)	47
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	2 cut(s)	56, 305
HpyAV	CCTTC	1 cut(s)	268
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4V	TGCA	1 cut(s)	260
HpyF10VI	GCNNNNNNNGC	7 cut(s)	17, 107, 146, 195, 245, 248, 257
HpyF3I	CTNAG	2 cut(s)	12, 150
Hsp92II	CATG	3 cut(s)	40, 50, 310
Kzo9I	GATC	1 cut(s)	95
LmnI	GCTCC	5 cut(s)	159, 194, 211, 232, 259
LpnPI	CCDG	7 cut(s)	109, 171, 205, 216, 243, 256, 270
Lsp1109I	GCAGC	5 cut(s)	208, 211, 226, 235, 238
LweI	GCATC	1 cut(s)	66
MaeIII	GTNAC	2 cut(s)	211, 296
MalI	GATC	1 cut(s)	97
MboI	GATC	1 cut(s)	95
MboII	GAAGA	6 cut(s)	35, 88, 166, 283, 290, 302
MlsI	TGGCCA	1 cut(s)	127
MluNI	TGGCCA	1 cut(s)	127
MnlI	CCTC	3 cut(s)	150, 160, 259
Mox20I	TGGCCA	1 cut(s)	127
MscI	TGGCCA	1 cut(s)	127
Msp20I	TGGCCA	1 cut(s)	127
MspA1I	CMGCKG	1 cut(s)	11
MspI	CCGG	1 cut(s)	192
MspR9I	CCNGG	1 cut(s)	231
Mva1269I	GAATGC	1 cut(s)	187
MvaI	CCWGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	7 cut(s)	17, 107, 146, 195, 245, 248, 257
NdeII	GATC	1 cut(s)	95
NlaIII	CATG	3 cut(s)	40, 50, 310
NlaIV	GGNNCC	2 cut(s)	161, 190
NmuCI	GTSAC	1 cut(s)	296
PagI	TCATGA	1 cut(s)	46
PctI	GAATGC	1 cut(s)	187
PfeI	GAWTC	3 cut(s)	40, 116, 312
PkrI	GCNGC	7 cut(s)	34, 85, 223, 226, 241, 250, 253
PpuMI	RGGWCCY	1 cut(s)	169
Psp5II	RGGWCCY	1 cut(s)	169
Psp6I	CCWGG	1 cut(s)	229
PspGI	CCWGG	1 cut(s)	229
PspN4I	GGNNCC	2 cut(s)	161, 190
PspPI	GGNCC	1 cut(s)	169
PspPPI	RGGWCCY	1 cut(s)	169
PstI	CTGCAG	1 cut(s)	262
SalI	GTCGAC	1 cut(s)	4
SatI	GCNGC	7 cut(s)	33, 84, 222, 225, 240, 249, 252
Sau3AI	GATC	1 cut(s)	95
Sau96I	GGNCC	1 cut(s)	169
ScrFI	CCNGG	1 cut(s)	231
SetI	ASST	5 cut(s)	18, 103, 147, 174, 320
SfaNI	GCATC	1 cut(s)	66
SfcI	CTRYAG	1 cut(s)	258
SinI	GGWCC	1 cut(s)	169
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
SsiI	CCGC	3 cut(s)	9, 33, 84
StyD4I	CCNGG	1 cut(s)	229
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	1 cut(s)	217
TaqI	TCGA	1 cut(s)	5
TauI	GCSGC	2 cut(s)	35, 86
TfiI	GAWTC	3 cut(s)	40, 116, 312
TscAI	CASTG	2 cut(s)	117, 250
TseFI	GTSAC	1 cut(s)	296
TseI	GCWGC	5 cut(s)	221, 224, 239, 248, 251
Tsp45I	GTSAC	1 cut(s)	296
TspDTI	ATGAA	1 cut(s)	35
TspRI	CASTG	2 cut(s)	117, 250
VpaK11BI	GGWCC	1 cut(s)	169
XmiI	GTMKAC	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.