Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005247

Physical Location & Seq

Genomic Coordinates Forward (+)

66892381 .. 66893268

Gene Structure 888 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00047330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGTCGACCGGTGAACTCGCTTGCACCTATGCCGCCGCGATTCTTCACGACGATGGCATCCCAATCACAGCAGAGAAGATTGCTACCTTGGTGAAATCTGCAAACGTGGAAGTAGAATCCTTCTGGCCAAGCCTCTTTGCCAAATTTGCTGAGAAGAGGAACCTTGGGGACCTTATTATGAATGCTGTTGGTTCGGCTCCATCTCCGGTAGCTATGGCTGCTCCCGCTGCTGCTGCGAGTGCTGCTGCTCCTGCAGTTGAGGAGAAGAAGGAAGAACCAGAGGAAGAAAGTGACGACGACATGCCGATATTCGATTTGTTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0008047 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009893 GO:0009987 GO:0010467 GO:0010562 GO:0010604 GO:0015934 GO:0016020 GO:0019207 GO:0019209 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0022625 GO:0022626 GO:0030234 GO:0030295 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0034641 GO:0034645 GO:0042325 GO:0042327 GO:0042788 GO:0043043 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043549 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071944 GO:0080090 GO:0098772 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

108

Amino Acids

11.34

Weight (kDa)

4.18

Isoelectric Point (pI)

68.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_60s	PF00428	22 - 107	2.4e-24	60s Acidic ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0005247)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24510
fragaria_vesca	FvH4_3g19530 FvH4_3g19540 FvH4_3g19560 FvH4_4g09050 FvH4_7g32851
malus_domestica	MD01G1228000.v1.1 MD07G1298500.v1.1
prunus_persica	Prupe.2G318300_v2.0.a1
pyrus_communis	pycom07g27090
rosa_chinensis	RchiOBHm_Chr1g0382801 RchiOBHm_Chr5g0032771
rosa_laevigata	RLG00000026158 RLG00000033427
rosa_multiflora	Rmu_sc0003389.1_g000003
rosa_roxburghii	Rroxscaffold_1G00047330 Rroxscaffold_1G00047790 Rroxscaffold_4G00277890 Rroxscaffold_5G00373420
rosa_rugosa	Rorug04G0253800 Rorug05G0133600
rosa_samantha	Rh1AG461300 Rh1BG418000 Rh1CG431800 Rh1DG450200 Rh5AG226400 Rh5CG255200
rosa_wichuraiana	Rw1G041040 Rw5G020760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	1 cut(s)	38
AciI	CCGC	3 cut(s)	33, 36, 225
AcoI	YGGCCR	1 cut(s)	125
AcsI	RAATTY	1 cut(s)	143
AgeI	ACCGGT	1 cut(s)	8
AluBI	AGCT	1 cut(s)	212
AluI	AGCT	1 cut(s)	212
AoxI	GGCC	1 cut(s)	125
ApeKI	GCWGC	6 cut(s)	218, 227, 230, 233, 242, 245
ApoI	RAATTY	1 cut(s)	143
AsiGI	ACCGGT	1 cut(s)	8
AspS9I	GGNCC	1 cut(s)	169
AsuHPI	GGTGA	2 cut(s)	23, 103
AvaII	GGWCC	1 cut(s)	169
BalI	TGGCCA	1 cut(s)	127
BbvI	GCAGC	6 cut(s)	205, 214, 217, 220, 229, 232
BccI	CCATC	2 cut(s)	47, 208
BfmI	CTRYAG	1 cut(s)	252
BisI	GCNGC	8 cut(s)	33, 36, 219, 228, 231, 234, 243, 246
BlsI	GCNGC	8 cut(s)	34, 37, 220, 229, 232, 235, 244, 247
Bme18I	GGWCC	1 cut(s)	169
BmgT120I	GGNCC	1 cut(s)	169
BmiI	GGNNCC	3 cut(s)	161, 170, 198
BmsI	GCATC	1 cut(s)	66
BsaJI	CCNNGG	2 cut(s)	87, 163
BsaWI	WCCGGW	2 cut(s)	8, 205
Bse118I	RCCGGY	1 cut(s)	8
BseDI	CCNNGG	2 cut(s)	87, 163
BseGI	GGATG	1 cut(s)	57
BseMII	CTCAG	1 cut(s)	141
BseRI	GAGGAG	1 cut(s)	275
BseXI	GCAGC	6 cut(s)	205, 214, 217, 220, 229, 232
Bsh1236I	CGCG	1 cut(s)	38
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	1 cut(s)	127
BshTI	ACCGGT	1 cut(s)	8
BsiEI	CGRYCG	1 cut(s)	9
BsiSI	CCGG	2 cut(s)	9, 206
BslFI	GGGAC	1 cut(s)	182
BsmFI	GGGAC	1 cut(s)	182
BsmI	GAATGC	1 cut(s)	187
BsnI	GGCC	1 cut(s)	127
BspACI	CCGC	3 cut(s)	33, 36, 225
BspANI	GGCC	1 cut(s)	127
BspCNI	CTCAG	1 cut(s)	142
BspFNI	CGCG	1 cut(s)	38
BspLI	GGNNCC	3 cut(s)	161, 170, 198
BspMAI	CTGCAG	1 cut(s)	256
BsrFI	RCCGGY	1 cut(s)	8
BssAI	RCCGGY	1 cut(s)	8
BssECI	CCNNGG	2 cut(s)	87, 163
BssT1I	CCWWGG	2 cut(s)	87, 163
Bst6I	CTCTTC	1 cut(s)	149
BstC8I	GCNNGC	1 cut(s)	22
BstDEI	CTNAG	1 cut(s)	150
BstF5I	GGATG	1 cut(s)	57
BstFNI	CGCG	1 cut(s)	38
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	8 cut(s)	146, 218, 224, 227, 233, 239, 242, 251
BstNSI	RCATGY	1 cut(s)	304
BstSFI	CTRYAG	1 cut(s)	252
BstUI	CGCG	1 cut(s)	38
BstV1I	GCAGC	6 cut(s)	205, 214, 217, 220, 229, 232
BsuRI	GGCC	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	57
Cac8I	GCNNGC	1 cut(s)	22
Cfr10I	RCCGGY	1 cut(s)	8
Cfr13I	GGNCC	1 cut(s)	169
CspAI	ACCGGT	1 cut(s)	8
CviAII	CATG	1 cut(s)	301
CviJI	RGCY	5 cut(s)	127, 132, 197, 212, 218
CviKI_1	RGCY	5 cut(s)	127, 132, 197, 212, 218
DdeI	CTNAG	1 cut(s)	150
EaeI	YGGCCR	1 cut(s)	125
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
Eco130I	CCWWGG	2 cut(s)	87, 163
Eco47I	GGWCC	1 cut(s)	169
EcoO109I	RGGNCCY	1 cut(s)	169
EcoT14I	CCWWGG	2 cut(s)	87, 163
ErhI	CCWWGG	2 cut(s)	87, 163
FaeI	CATG	1 cut(s)	304
FaiI	YATR	4 cut(s)	30, 179, 215, 302
FaqI	GGGAC	1 cut(s)	182
FatI	CATG	1 cut(s)	300
FauI	CCCGC	1 cut(s)	232
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	8 cut(s)	33, 36, 219, 228, 231, 234, 243, 246
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	8 cut(s)	33, 36, 219, 228, 231, 234, 243, 246
GluI	GCNGC	8 cut(s)	33, 36, 219, 228, 231, 234, 243, 246
HaeIII	GGCC	1 cut(s)	127
HapII	CCGG	2 cut(s)	9, 206
Hin1II	CATG	1 cut(s)	304
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	2 cut(s)	40, 116
HpaII	CCGG	2 cut(s)	9, 206
HphI	GGTGA	2 cut(s)	23, 103
Hpy166II	GTNNAC	2 cut(s)	6, 14
Hpy188III	TCNNGA	1 cut(s)	47
Hpy8I	GTNNAC	2 cut(s)	6, 14
Hpy99I	CGWCG	2 cut(s)	53, 299
HpyAV	CCTTC	2 cut(s)	130, 262
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	3 cut(s)	24, 101, 254
HpyF10VI	GCNNNNNNNGC	8 cut(s)	146, 218, 224, 227, 233, 239, 242, 251
HpyF3I	CTNAG	1 cut(s)	150
HpySE526I	ACGT	1 cut(s)	105
Hsp92II	CATG	1 cut(s)	304
LmnI	GCTCC	3 cut(s)	202, 226, 253
LpnPI	CCDG	5 cut(s)	22, 109, 219, 264, 291
Lsp1109I	GCAGC	6 cut(s)	205, 214, 217, 220, 229, 232
LweI	GCATC	1 cut(s)	66
MaeII	ACGT	1 cut(s)	105
MaeIII	GTNAC	1 cut(s)	290
MboII	GAAGA	6 cut(s)	35, 88, 166, 277, 284, 296
MlsI	TGGCCA	1 cut(s)	127
MluCI	AATT	2 cut(s)	143, 322
MluNI	TGGCCA	1 cut(s)	127
MnlI	CCTC	4 cut(s)	143, 150, 253, 274
Mox20I	TGGCCA	1 cut(s)	127
MscI	TGGCCA	1 cut(s)	127
MseI	TTAA	2 cut(s)	321, 325
MslI	CAYNNNNRTG	1 cut(s)	51
Msp20I	TGGCCA	1 cut(s)	127
MspA1I	CMGCKG	1 cut(s)	227
MspI	CCGG	2 cut(s)	9, 206
Mva1269I	GAATGC	1 cut(s)	187
MvnI	CGCG	1 cut(s)	38
MwoI	GCNNNNNNNGC	8 cut(s)	146, 218, 224, 227, 233, 239, 242, 251
NlaIII	CATG	1 cut(s)	304
NlaIV	GGNNCC	3 cut(s)	161, 170, 198
NmuCI	GTSAC	1 cut(s)	290
NspI	RCATGY	1 cut(s)	304
PacI	TTAATTAA	1 cut(s)	325
PctI	GAATGC	1 cut(s)	187
PfeI	GAWTC	2 cut(s)	40, 116
PinAI	ACCGGT	1 cut(s)	8
PkrI	GCNGC	8 cut(s)	34, 37, 220, 229, 232, 235, 244, 247
PpuMI	RGGWCCY	1 cut(s)	169
Psp5II	RGGWCCY	1 cut(s)	169
PspN4I	GGNNCC	3 cut(s)	161, 170, 198
PspPI	GGNCC	1 cut(s)	169
PspPPI	RGGWCCY	1 cut(s)	169
PstI	CTGCAG	1 cut(s)	256
RseI	CAYNNNNRTG	1 cut(s)	51
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	2 cut(s)	321, 325
SatI	GCNGC	8 cut(s)	33, 36, 219, 228, 231, 234, 243, 246
Sau96I	GGNCC	1 cut(s)	169
SetI	ASST	6 cut(s)	29, 89, 108, 165, 174, 214
SfaNI	GCATC	1 cut(s)	66
SfcI	CTRYAG	1 cut(s)	252
SinI	GGWCC	1 cut(s)	169
SmiMI	CAYNNNNRTG	1 cut(s)	51
Sse9I	AATT	2 cut(s)	143, 322
SsiI	CCGC	3 cut(s)	33, 36, 225
StyI	CCWWGG	2 cut(s)	87, 163
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	2 cut(s)	5, 312
TasI	AATT	2 cut(s)	143, 322
TauI	GCSGC	2 cut(s)	35, 38
TfiI	GAWTC	2 cut(s)	40, 116
Tru1I	TTAA	2 cut(s)	321, 325
Tru9I	TTAA	2 cut(s)	321, 325
TseFI	GTSAC	1 cut(s)	290
TseI	GCWGC	6 cut(s)	218, 227, 230, 233, 242, 245
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	1 cut(s)	194
VpaK11BI	GGWCC	1 cut(s)	169
XapI	RAATTY	1 cut(s)	143
XceI	RCATGY	1 cut(s)	304
XmiI	GTMKAC	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.