Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005247

Physical Location & Seq

Genomic Coordinates Reverse (-)

12645218 .. 12645892

Gene Structure 675 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g19540.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGTCGACCGCTGAAGTTGCTTGCTCCTATGCCGCCATGATTCTTCACGACGATGGCATCCCAATCACAGCAGAGAAGATTGCTACCTTGTTGAAATCTGCAAACGTGAAAGTAGATTCCTTGTGGCCAAGCCTCTTTGCCAAGCTTGCTGAGAAGAGGGACGTTATTGGGGACCTTGTTATGAATCCTGTTGGTTCGGCTCAAGCTCCGGTAGCTATGGCTGCTCCTGCTGCTGCTGCAAGTGCTGCTGCTCCGGCTGTTGAGGAGAAGAAGAAGAAGGAAGAAGAACCAGAGGAAGGAAGTGATGATGACATGCCGCTATTCGACTTGTTTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0008047 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009893 GO:0009987 GO:0010467 GO:0010562 GO:0010604 GO:0015934 GO:0016020 GO:0019207 GO:0019209 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0022625 GO:0022626 GO:0030234 GO:0030295 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0034641 GO:0034645 GO:0042325 GO:0042327 GO:0042788 GO:0043043 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043549 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071944 GO:0080090 GO:0098772 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

113

Amino Acids

11.77

Weight (kDa)

4.51

Isoelectric Point (pI)

55.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_60s	PF00428	22 - 111	1e-21	60s Acidic ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005247)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24510
fragaria_vesca	FvH4_3g19530 FvH4_3g19540 FvH4_3g19560 FvH4_4g09050 FvH4_7g32851
malus_domestica	MD01G1228000.v1.1 MD07G1298500.v1.1
prunus_persica	Prupe.2G318300_v2.0.a1
pyrus_communis	pycom07g27090
rosa_chinensis	RchiOBHm_Chr1g0382801 RchiOBHm_Chr5g0032771
rosa_laevigata	RLG00000026158 RLG00000033427
rosa_multiflora	Rmu_sc0003389.1_g000003
rosa_roxburghii	Rroxscaffold_1G00047330 Rroxscaffold_1G00047790 Rroxscaffold_4G00277890 Rroxscaffold_5G00373420
rosa_rugosa	Rorug04G0253800 Rorug05G0133600
rosa_samantha	Rh1AG461300 Rh1BG418000 Rh1CG431800 Rh1DG450200 Rh5AG226400 Rh5CG255200
rosa_wichuraiana	Rw1G041040 Rw5G020760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	3 cut(s)	9, 33, 317
AcoI	YGGCCR	1 cut(s)	125
AcuI	CTGAAG	1 cut(s)	33
AfiI	CCNNNNNNNGG	1 cut(s)	296
AgsI	TTSAA	1 cut(s)	94
AluBI	AGCT	3 cut(s)	145, 206, 215
AluI	AGCT	3 cut(s)	145, 206, 215
AoxI	GGCC	1 cut(s)	125
ApeKI	GCWGC	6 cut(s)	221, 230, 233, 236, 245, 248
AspS9I	GGNCC	1 cut(s)	172
AvaII	GGWCC	1 cut(s)	172
BalI	TGGCCA	1 cut(s)	127
BbvI	GCAGC	6 cut(s)	208, 217, 220, 223, 232, 235
BccI	CCATC	1 cut(s)	47
BisI	GCNGC	8 cut(s)	33, 222, 231, 234, 237, 246, 249, 317
BlsI	GCNGC	8 cut(s)	34, 223, 232, 235, 238, 247, 250, 318
Bme18I	GGWCC	1 cut(s)	172
BmgT120I	GGNCC	1 cut(s)	172
BmiI	GGNNCC	1 cut(s)	173
BmsI	GCATC	1 cut(s)	66
BpuEI	CTTGAG	1 cut(s)	186
BsaWI	WCCGGW	1 cut(s)	208
Bsc4I	CCNNNNNNNGG	1 cut(s)	296
BseGI	GGATG	1 cut(s)	57
BseLI	CCNNNNNNNGG	1 cut(s)	296
BseMII	CTCAG	1 cut(s)	141
BseRI	GAGGAG	1 cut(s)	278
BseXI	GCAGC	6 cut(s)	208, 217, 220, 223, 232, 235
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	1 cut(s)	127
BsiEI	CGRYCG	1 cut(s)	9
BsiSI	CCGG	2 cut(s)	209, 254
BslFI	GGGAC	2 cut(s)	173, 185
BslI	CCNNNNNNNGG	1 cut(s)	296
BsmFI	GGGAC	2 cut(s)	173, 185
BsnI	GGCC	1 cut(s)	127
BspACI	CCGC	3 cut(s)	9, 33, 317
BspANI	GGCC	1 cut(s)	127
BspCNI	CTCAG	1 cut(s)	142
BspLI	GGNNCC	1 cut(s)	173
Bst6I	CTCTTC	1 cut(s)	149
BstAPI	GCANNNNNTGC	1 cut(s)	245
BstC8I	GCNNGC	2 cut(s)	22, 147
BstDEI	CTNAG	1 cut(s)	150
BstF5I	GGATG	1 cut(s)	57
BstMCI	CGRYCG	1 cut(s)	9
BstNSI	RCATGY	1 cut(s)	316
BstV1I	GCAGC	6 cut(s)	208, 217, 220, 223, 232, 235
BsuRI	GGCC	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	57
Cac8I	GCNNGC	2 cut(s)	22, 147
Cfr13I	GGNCC	1 cut(s)	172
CviAII	CATG	2 cut(s)	37, 313
CviJI	RGCY	8 cut(s)	127, 132, 145, 200, 206, 215, 221, 257
CviKI_1	RGCY	8 cut(s)	127, 132, 145, 200, 206, 215, 221, 257
DdeI	CTNAG	1 cut(s)	150
DraI	TTTAAA	1 cut(s)	334
EaeI	YGGCCR	1 cut(s)	125
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
Eco47I	GGWCC	1 cut(s)	172
Eco57I	CTGAAG	1 cut(s)	33
EcoO109I	RGGNCCY	1 cut(s)	172
FaeI	CATG	2 cut(s)	40, 316
FaiI	YATR	5 cut(s)	30, 38, 182, 218, 314
FaqI	GGGAC	2 cut(s)	173, 185
FatI	CATG	2 cut(s)	36, 312
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	8 cut(s)	33, 222, 231, 234, 237, 246, 249, 317
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	8 cut(s)	33, 222, 231, 234, 237, 246, 249, 317
GluI	GCNGC	8 cut(s)	33, 222, 231, 234, 237, 246, 249, 317
HaeIII	GGCC	1 cut(s)	127
HapII	CCGG	2 cut(s)	209, 254
Hin1II	CATG	2 cut(s)	40, 316
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HindIII	AAGCTT	1 cut(s)	143
HinfI	GANTC	3 cut(s)	40, 116, 184
HpaII	CCGG	2 cut(s)	209, 254
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188III	TCNNGA	1 cut(s)	47
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	2 cut(s)	271, 290
HpyCH4IV	ACGT	2 cut(s)	105, 162
HpyCH4V	TGCA	2 cut(s)	101, 239
HpyF3I	CTNAG	1 cut(s)	150
HpySE526I	ACGT	2 cut(s)	105, 162
Hsp92II	CATG	2 cut(s)	40, 316
LmnI	GCTCC	4 cut(s)	29, 211, 229, 256
LpnPI	CCDG	5 cut(s)	201, 222, 240, 267, 303
Lsp1109I	GCAGC	6 cut(s)	208, 217, 220, 223, 232, 235
LweI	GCATC	1 cut(s)	66
MaeII	ACGT	2 cut(s)	105, 162
MboII	GAAGA	8 cut(s)	35, 88, 166, 280, 283, 286, 293, 296
MlsI	TGGCCA	1 cut(s)	127
MluNI	TGGCCA	1 cut(s)	127
MnlI	CCTC	4 cut(s)	143, 150, 256, 286
Mox20I	TGGCCA	1 cut(s)	127
MscI	TGGCCA	1 cut(s)	127
MseI	TTAA	1 cut(s)	333
MslI	CAYNNNNRTG	1 cut(s)	51
Msp20I	TGGCCA	1 cut(s)	127
MspA1I	CMGCKG	1 cut(s)	11
MspI	CCGG	2 cut(s)	209, 254
NlaIII	CATG	2 cut(s)	40, 316
NlaIV	GGNNCC	1 cut(s)	173
NspI	RCATGY	1 cut(s)	316
PfeI	GAWTC	3 cut(s)	40, 116, 184
PkrI	GCNGC	8 cut(s)	34, 223, 232, 235, 238, 247, 250, 318
PpuMI	RGGWCCY	1 cut(s)	172
Psp5II	RGGWCCY	1 cut(s)	172
PspN4I	GGNNCC	1 cut(s)	173
PspPI	GGNCC	1 cut(s)	172
PspPPI	RGGWCCY	1 cut(s)	172
RseI	CAYNNNNRTG	1 cut(s)	51
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	333
SatI	GCNGC	8 cut(s)	33, 222, 231, 234, 237, 246, 249, 317
Sau96I	GGNCC	1 cut(s)	172
SetI	ASST	7 cut(s)	89, 108, 147, 165, 177, 208, 217
SfaNI	GCATC	1 cut(s)	66
SinI	GGWCC	1 cut(s)	172
SmiMI	CAYNNNNRTG	1 cut(s)	51
SmlI	CTYRAG	1 cut(s)	201
SmoI	CTYRAG	1 cut(s)	201
SsiI	CCGC	3 cut(s)	9, 33, 317
TaiI	ACGT	2 cut(s)	108, 165
TaqI	TCGA	2 cut(s)	5, 324
TauI	GCSGC	2 cut(s)	35, 319
TfiI	GAWTC	3 cut(s)	40, 116, 184
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TseI	GCWGC	6 cut(s)	221, 230, 233, 236, 245, 248
TspDTI	ATGAA	1 cut(s)	197
VpaK11BI	GGWCC	1 cut(s)	172
XceI	RCATGY	1 cut(s)	316
XmiI	GTMKAC	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.