Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0005247

Physical Location & Seq

Genomic Coordinates Forward (+)

26904681 .. 26905262

Gene Structure 582 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g27090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGTCGACCGCCGAGCTTGCTTGCTCCTACGCCGCCATGATCGATCAGGACGATGGCGTCTCGATCACTGCTGAGAAGATCGGCGCCTTGGTGAAATCTGCTAATGTGTCGGTGGAGTCATGCTGGCCTGGCCTCTTTGGCAAGCTCGCAGAAAAGAGGAACCTCGAGGACCCTTTTTTGAATGCTTGCGCAACTGGTGGTTCACCTCCAGTAGCCGTGCCCCCTTCTGCTGCTGGTGCAGGTGGTGCTACCAGCGCCGCTCTTCCTGCAGTCGAGGAGAAGAAGGTGAGAATTTCGTCTCCGCTTAGATTTTGTCCAGAATCTAACCTGCATGCTACCTTTGAATTCGAGTTTGATGTTACATTGATCTTGTTATCTAAGTTCTCCGGTTCTGTATTTGCTGGAAGAAGCCGAGGAAGAGCGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0008047 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009893 GO:0009987 GO:0010467 GO:0010562 GO:0010604 GO:0015934 GO:0016020 GO:0019207 GO:0019209 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0022625 GO:0022626 GO:0030234 GO:0030295 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0034641 GO:0034645 GO:0042325 GO:0042327 GO:0042788 GO:0043043 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043549 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044877 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071944 GO:0080090 GO:0098772 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

143

Amino Acids

14.76

Weight (kDa)

5.83

Isoelectric Point (pI)

61.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_60s	PF00428	21 - 95	3.2e-10	60s Acidic ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005247)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24510
fragaria_vesca	FvH4_3g19530 FvH4_3g19540 FvH4_3g19560 FvH4_4g09050 FvH4_7g32851
malus_domestica	MD01G1228000.v1.1 MD07G1298500.v1.1
prunus_persica	Prupe.2G318300_v2.0.a1
pyrus_communis	pycom07g27090
rosa_chinensis	RchiOBHm_Chr1g0382801 RchiOBHm_Chr5g0032771
rosa_laevigata	RLG00000026158 RLG00000033427
rosa_multiflora	Rmu_sc0003389.1_g000003
rosa_roxburghii	Rroxscaffold_1G00047330 Rroxscaffold_1G00047790 Rroxscaffold_4G00277890 Rroxscaffold_5G00373420
rosa_rugosa	Rorug04G0253800 Rorug05G0133600
rosa_samantha	Rh1AG461300 Rh1BG418000 Rh1CG431800 Rh1DG450200 Rh5AG226400 Rh5CG255200
rosa_wichuraiana	Rw1G041040 Rw5G020760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	230
AasI	GACNNNNNNGTC	1 cut(s)	56
AbsI	CCTCGAGG	1 cut(s)	164
Acc16I	TGCGCA	1 cut(s)	190
Acc36I	ACCTGC	2 cut(s)	230, 336
AccB1I	GGYRCC	1 cut(s)	83
AccBSI	CCGCTC	1 cut(s)	260
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	1 cut(s)	424
AciI	CCGC	4 cut(s)	9, 33, 258, 302
AcsI	RAATTY	2 cut(s)	291, 344
AcyI	GRCGYC	2 cut(s)	57, 84
AgsI	TTSAA	2 cut(s)	181, 344
AjnI	CCWGG	1 cut(s)	127
AluBI	AGCT	2 cut(s)	16, 145
AluI	AGCT	2 cut(s)	16, 145
Alw26I	GTCTC	2 cut(s)	64, 303
Ama87I	CYCGRG	1 cut(s)	164
AoxI	GGCC	2 cut(s)	125, 130
ApeKI	GCWGC	1 cut(s)	230
ApoI	RAATTY	2 cut(s)	291, 344
AspLEI	GCGC	4 cut(s)	86, 191, 257, 424
AspS9I	GGNCC	1 cut(s)	169
AsuHPI	GGTGA	3 cut(s)	103, 195, 298
AvaI	CYCGRG	1 cut(s)	164
AvaII	GGWCC	1 cut(s)	169
BaeGI	GKGCMC	1 cut(s)	222
BanI	GGYRCC	1 cut(s)	83
BbvI	GCAGC	1 cut(s)	217
BccI	CCATC	1 cut(s)	47
BceAI	ACGGC	1 cut(s)	200
BciT130I	CCWGG	1 cut(s)	129
BcoDI	GTCTC	2 cut(s)	64, 303
BfmI	CTRYAG	1 cut(s)	267
BfoI	RGCGCY	2 cut(s)	87, 258
BfuAI	ACCTGC	2 cut(s)	230, 336
BglI	GCCNNNNNGGC	1 cut(s)	138
BisI	GCNGC	3 cut(s)	33, 231, 258
BlsI	GCNGC	3 cut(s)	34, 232, 259
Bme1390I	CCNGG	1 cut(s)	129
Bme18I	GGWCC	1 cut(s)	169
BmeT110I	CYCGRG	1 cut(s)	164
BmgT120I	GGNCC	1 cut(s)	169
BmiI	GGNNCC	3 cut(s)	85, 161, 171
BmrFI	CCNGG	1 cut(s)	129
BpmI	CTGGAG	1 cut(s)	192
Bsa29I	ATCGAT	1 cut(s)	42
BsaHI	GRCGYC	2 cut(s)	57, 84
BsaJI	CCNNGG	2 cut(s)	87, 412
BsaWI	WCCGGW	1 cut(s)	386
Bse1I	ACTGG	2 cut(s)	199, 209
BseBI	CCWGG	1 cut(s)	129
BseCI	ATCGAT	1 cut(s)	42
BseDI	CCNNGG	2 cut(s)	87, 412
BseMII	CTCAG	1 cut(s)	63
BseNI	ACTGG	2 cut(s)	199, 209
BseRI	GAGGAG	1 cut(s)	290
BseSI	GKGCMC	1 cut(s)	222
BseXI	GCAGC	1 cut(s)	217
BsgI	GTGCAG	1 cut(s)	258
Bsh1236I	CGCG	1 cut(s)	424
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	2 cut(s)	127, 132
BshNI	GGYRCC	1 cut(s)	83
BshVI	ATCGAT	1 cut(s)	42
BsiEI	CGRYCG	1 cut(s)	9
BsiHKCI	CYCGRG	1 cut(s)	164
BsiSI	CCGG	1 cut(s)	387
BsmAI	GTCTC	2 cut(s)	64, 303
BsmBI	CGTCTC	2 cut(s)	64, 303
BsmI	GAATGC	1 cut(s)	187
BsnI	GGCC	2 cut(s)	127, 132
BsoBI	CYCGRG	1 cut(s)	164
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp143I	GATC	5 cut(s)	39, 43, 63, 78, 366
BspACI	CCGC	4 cut(s)	9, 33, 258, 302
BspANI	GGCC	2 cut(s)	127, 132
BspCNI	CTCAG	1 cut(s)	64
BspDI	ATCGAT	1 cut(s)	42
BspFNI	CGCG	1 cut(s)	424
BspLI	GGNNCC	3 cut(s)	85, 161, 171
BspMAI	CTGCAG	1 cut(s)	271
BspMI	ACCTGC	2 cut(s)	230, 336
BspQI	GCTCTTC	2 cut(s)	267, 412
BspT107I	GGYRCC	1 cut(s)	83
BsrBI	CCGCTC	1 cut(s)	260
BsrI	ACTGG	2 cut(s)	199, 209
BssECI	CCNNGG	2 cut(s)	87, 412
BssMI	GATC	5 cut(s)	39, 43, 63, 78, 366
BssNI	GRCGYC	2 cut(s)	57, 84
BssT1I	CCWWGG	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	129
Bst6I	CTCTTC	2 cut(s)	267, 412
BstACI	GRCGYC	2 cut(s)	57, 84
BstAPI	GCANNNNNTGC	1 cut(s)	245
BstC8I	GCNNGC	7 cut(s)	18, 22, 125, 143, 147, 187, 333
BstDEI	CTNAG	3 cut(s)	72, 305, 378
BstFNI	CGCG	1 cut(s)	424
BstH2I	RGCGCY	2 cut(s)	87, 258
BstHHI	GCGC	4 cut(s)	86, 191, 257, 424
BstKTI	GATC	5 cut(s)	42, 46, 66, 81, 369
BstMAI	GTCTC	2 cut(s)	64, 303
BstMBI	GATC	5 cut(s)	39, 43, 63, 78, 366
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	7 cut(s)	17, 129, 138, 236, 245, 254, 266
BstNI	CCWGG	1 cut(s)	129
BstNSI	RCATGY	1 cut(s)	335
BstSCI	CCNGG	1 cut(s)	127
BstSFI	CTRYAG	1 cut(s)	267
BstSLI	GKGCMC	1 cut(s)	222
BstUI	CGCG	1 cut(s)	424
BstV1I	GCAGC	1 cut(s)	217
Bsu15I	ATCGAT	1 cut(s)	42
BsuRI	GGCC	2 cut(s)	127, 132
BsuTUI	ATCGAT	1 cut(s)	42
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	1 cut(s)	66
BveI	ACCTGC	2 cut(s)	230, 336
Cac8I	GCNNGC	7 cut(s)	18, 22, 125, 143, 147, 187, 333
CfoI	GCGC	4 cut(s)	86, 191, 257, 424
Cfr13I	GGNCC	1 cut(s)	169
ClaI	ATCGAT	1 cut(s)	42
CseI	GACGC	1 cut(s)	46
CviAII	CATG	3 cut(s)	37, 120, 332
CviJI	RGCY	6 cut(s)	16, 127, 132, 145, 215, 411
CviKI_1	RGCY	6 cut(s)	16, 127, 132, 145, 215, 411
DdeI	CTNAG	3 cut(s)	72, 305, 378
DinI	GGCGCC	1 cut(s)	85
DpnI	GATC	5 cut(s)	41, 45, 65, 80, 368
DpnII	GATC	5 cut(s)	39, 43, 63, 78, 366
DrdI	GACNNNNNNGTC	1 cut(s)	56
DseDI	GACNNNNNNGTC	1 cut(s)	56
Eam1104I	CTCTTC	2 cut(s)	267, 412
EarI	CTCTTC	2 cut(s)	267, 412
Eco130I	CCWWGG	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	169
Eco88I	CYCGRG	1 cut(s)	164
EcoO109I	RGGNCCY	1 cut(s)	169
EcoRI	GAATTC	1 cut(s)	344
EcoRII	CCWGG	1 cut(s)	127
EcoT14I	CCWWGG	1 cut(s)	87
EgeI	GGCGCC	1 cut(s)	85
EheI	GGCGCC	1 cut(s)	85
ErhI	CCWWGG	1 cut(s)	87
Esp3I	CGTCTC	2 cut(s)	64, 303
FaeI	CATG	3 cut(s)	40, 123, 335
FaiI	YATR	3 cut(s)	38, 121, 333
FatI	CATG	3 cut(s)	36, 119, 331
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	3 cut(s)	33, 231, 258
Fsp4HI	GCNGC	3 cut(s)	33, 231, 258
FspI	TGCGCA	1 cut(s)	190
GlaI	GCGC	4 cut(s)	85, 190, 256, 423
GluI	GCNGC	3 cut(s)	33, 231, 258
GsuI	CTGGAG	1 cut(s)	192
HaeII	RGCGCY	2 cut(s)	87, 258
HaeIII	GGCC	2 cut(s)	127, 132
HapII	CCGG	1 cut(s)	387
HgaI	GACGC	1 cut(s)	46
HhaI	GCGC	4 cut(s)	86, 191, 257, 424
Hin1I	GRCGYC	2 cut(s)	57, 84
Hin1II	CATG	3 cut(s)	40, 123, 335
Hin6I	GCGC	4 cut(s)	84, 189, 255, 422
HinP1I	GCGC	4 cut(s)	84, 189, 255, 422
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	2 cut(s)	116, 320
HpaII	CCGG	1 cut(s)	387
HphI	GGTGA	3 cut(s)	103, 195, 298
Hpy166II	GTNNAC	2 cut(s)	6, 203
Hpy188III	TCNNGA	3 cut(s)	47, 61, 317
Hpy8I	GTNNAC	2 cut(s)	6, 203
HpyAV	CCTTC	2 cut(s)	234, 277
HpyCH4V	TGCA	3 cut(s)	239, 269, 331
HpyF10VI	GCNNNNNNNGC	7 cut(s)	17, 129, 138, 236, 245, 254, 266
HpyF3I	CTNAG	3 cut(s)	72, 305, 378
Hsp92I	GRCGYC	2 cut(s)	57, 84
Hsp92II	CATG	3 cut(s)	40, 123, 335
HspAI	GCGC	4 cut(s)	84, 189, 255, 422
KasI	GGCGCC	1 cut(s)	83
Kzo9I	GATC	5 cut(s)	39, 43, 63, 78, 366
LguI	GCTCTTC	2 cut(s)	267, 412
LmnI	GCTCC	1 cut(s)	29
Lsp1109I	GCAGC	1 cut(s)	217
MaeIII	GTNAC	1 cut(s)	358
MalI	GATC	5 cut(s)	41, 45, 65, 80, 368
MbiI	CCGCTC	1 cut(s)	260
MboI	GATC	5 cut(s)	39, 43, 63, 78, 366
MboII	GAAGA	5 cut(s)	88, 254, 292, 417, 429
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	2 cut(s)	291, 344
Mly113I	GGCGCC	1 cut(s)	84
MlyI	GAGTC	1 cut(s)	125
MnlI	CCTC	7 cut(s)	143, 150, 160, 173, 216, 268, 407
MspI	CCGG	1 cut(s)	387
MspR9I	CCNGG	1 cut(s)	129
Mva1269I	GAATGC	1 cut(s)	187
MvaI	CCWGG	1 cut(s)	129
MvnI	CGCG	1 cut(s)	424
MwoI	GCNNNNNNNGC	7 cut(s)	17, 129, 138, 236, 245, 254, 266
NarI	GGCGCC	1 cut(s)	84
NdeII	GATC	5 cut(s)	39, 43, 63, 78, 366
NlaIII	CATG	3 cut(s)	40, 123, 335
NlaIV	GGNNCC	3 cut(s)	85, 161, 171
NmeAIII	GCCGAG	1 cut(s)	37
NsbI	TGCGCA	1 cut(s)	190
NspI	RCATGY	1 cut(s)	335
PaeI	GCATGC	1 cut(s)	335
PaeR7I	CTCGAG	1 cut(s)	164
PaqCI	CACCTGC	1 cut(s)	230
PciSI	GCTCTTC	2 cut(s)	267, 412
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PctI	GAATGC	1 cut(s)	187
PfeI	GAWTC	1 cut(s)	320
PkrI	GCNGC	3 cut(s)	34, 232, 259
PleI	GAGTC	1 cut(s)	124
PluTI	GGCGCC	1 cut(s)	87
PpsI	GAGTC	1 cut(s)	124
PpuMI	RGGWCCY	1 cut(s)	169
Psp5II	RGGWCCY	1 cut(s)	169
Psp6I	CCWGG	1 cut(s)	127
PspGI	CCWGG	1 cut(s)	127
PspN4I	GGNNCC	3 cut(s)	85, 161, 171
PspPI	GGNCC	1 cut(s)	169
PspPPI	RGGWCCY	1 cut(s)	169
PspXI	VCTCGAGB	1 cut(s)	164
PstI	CTGCAG	1 cut(s)	271
SalI	GTCGAC	1 cut(s)	4
SapI	GCTCTTC	2 cut(s)	267, 412
SatI	GCNGC	3 cut(s)	33, 231, 258
Sau3AI	GATC	5 cut(s)	39, 43, 63, 78, 366
Sau96I	GGNCC	1 cut(s)	169
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	1 cut(s)	129
SduI	GDGCHC	1 cut(s)	222
SetI	ASST	8 cut(s)	18, 147, 165, 208, 244, 288, 330, 341
SfcI	CTRYAG	1 cut(s)	267
SfoI	GGCGCC	1 cut(s)	85
Sfr274I	CTCGAG	1 cut(s)	164
SinI	GGWCC	1 cut(s)	169
SlaI	CTCGAG	1 cut(s)	164
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
SphI	GCATGC	1 cut(s)	335
Sse9I	AATT	2 cut(s)	291, 344
SsiI	CCGC	4 cut(s)	9, 33, 258, 302
SspDI	GGCGCC	1 cut(s)	83
StyD4I	CCNGG	1 cut(s)	127
StyI	CCWWGG	1 cut(s)	87
TaqI	TCGA	6 cut(s)	5, 42, 62, 165, 273, 348
TasI	AATT	2 cut(s)	291, 344
TauI	GCSGC	2 cut(s)	35, 260
TfiI	GAWTC	1 cut(s)	320
TscAI	CASTG	1 cut(s)	73
TseI	GCWGC	1 cut(s)	230
TspRI	CASTG	1 cut(s)	73
VpaK11BI	GGWCC	1 cut(s)	169
XapI	RAATTY	2 cut(s)	291, 344
XceI	RCATGY	1 cut(s)	335
XhoI	CTCGAG	1 cut(s)	164
XmiI	GTMKAC	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.