Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0005247

Physical Location & Seq

Genomic Coordinates Forward (+)

23535785 .. 23536984

Gene Structure 1200 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g32851.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGATGGGAAGTACTGGGACTCCTCATTTACAAAACGGTTACAACGCTGCGCCTCATTTCTCGCTTTCCTTCTCTCTTGTAGATTCAAATCCAAGCTCTTGCGAAACAATGTCGACCGGTGAAATTGCTTGCTCCTACGCCGCCATGATTCTTCATGATGACGGCATCCCAATCACTGCTGAGAAGATTGCTACTTTGCTCAAATCTGCAAATGTGAACGTGGAAGCATTCTGGCCCAACCTCTTTGCCAAGCTTGCAGAGAAGAAGGATCTCGGTGAACTCACCATGAATGTTGGATGTGGTGGTGGCGCTGCGGCTCCTGTTGGTATGGCTGCTCCGGCCGCCGCCGCCGCCACTGCTGCTGCTCCTGCTGCTGAGGAGAAGAAGCCTGAACCAGAGGAAGAAAGTGATGATGACATGGGTATCAGCTTGTTTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0008047 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009893 GO:0009987 GO:0010467 GO:0010562 GO:0010604 GO:0015934 GO:0016020 GO:0019207 GO:0019209 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0022625 GO:0022626 GO:0030234 GO:0030295 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0034641 GO:0034645 GO:0042325 GO:0042327 GO:0042788 GO:0043043 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043549 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071944 GO:0080090 GO:0098772 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

147

Amino Acids

14.98

Weight (kDa)

4.34

Isoelectric Point (pI)

41.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_60s	PF00428	58 - 145	4.7e-25	60s Acidic ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005247)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24510
fragaria_vesca	FvH4_3g19530 FvH4_3g19540 FvH4_3g19560 FvH4_4g09050 FvH4_7g32851
malus_domestica	MD01G1228000.v1.1 MD07G1298500.v1.1
prunus_persica	Prupe.2G318300_v2.0.a1
pyrus_communis	pycom07g27090
rosa_chinensis	RchiOBHm_Chr1g0382801 RchiOBHm_Chr5g0032771
rosa_laevigata	RLG00000026158 RLG00000033427
rosa_multiflora	Rmu_sc0003389.1_g000003
rosa_roxburghii	Rroxscaffold_1G00047330 Rroxscaffold_1G00047790 Rroxscaffold_4G00277890 Rroxscaffold_5G00373420
rosa_rugosa	Rorug04G0253800 Rorug05G0133600
rosa_samantha	Rh1AG461300 Rh1BG418000 Rh1CG431800 Rh1DG450200 Rh5AG226400 Rh5CG255200
rosa_wichuraiana	Rw1G041040 Rw5G020760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	113
AciI	CCGC	6 cut(s)	141, 314, 342, 345, 348, 351
AclWI	GGATC	1 cut(s)	276
AcoI	YGGCCR	1 cut(s)	339
AfaI	GTAC	1 cut(s)	13
AgeI	ACCGGT	1 cut(s)	116
AgsI	TTSAA	1 cut(s)	87
AluBI	AGCT	3 cut(s)	96, 253, 429
AluI	AGCT	3 cut(s)	96, 253, 429
AlwI	GGATC	1 cut(s)	276
AoxI	GGCC	2 cut(s)	233, 339
ApeKI	GCWGC	6 cut(s)	47, 311, 332, 359, 362, 371
AsiGI	ACCGGT	1 cut(s)	116
AspLEI	GCGC	2 cut(s)	52, 311
AspS9I	GGNCC	1 cut(s)	234
AsuHPI	GGTGA	3 cut(s)	131, 274, 287
BaeI	ACNNNNGTAYC	2 cut(s)	406, 439
BbvCI	CCTCAGC	1 cut(s)	375
BbvI	GCAGC	6 cut(s)	34, 298, 319, 346, 349, 358
BceAI	ACGGC	1 cut(s)	178
BfaI	CTAG	1 cut(s)	439
BfoI	RGCGCY	1 cut(s)	312
BmcAI	AGTACT	1 cut(s)	13
BmgT120I	GGNCC	1 cut(s)	234
BmiI	GGNNCC	1 cut(s)	318
BmrI	ACTGGG	1 cut(s)	24
BmsI	GCATC	1 cut(s)	174
BmuI	ACTGGG	1 cut(s)	24
Bpu10I	CCTNAGC	1 cut(s)	375
BsaBI	GATNNNNATC	1 cut(s)	87
BsaWI	WCCGGW	1 cut(s)	116
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bse118I	RCCGGY	1 cut(s)	116
Bse1I	ACTGG	1 cut(s)	19
Bse8I	GATNNNNATC	1 cut(s)	87
BseGI	GGATG	2 cut(s)	165, 302
BseJI	GATNNNNATC	1 cut(s)	87
BseMII	CTCAG	2 cut(s)	171, 366
BseNI	ACTGG	1 cut(s)	19
BseRI	GAGGAG	2 cut(s)	12, 392
BseX3I	CGGCCG	1 cut(s)	339
BseXI	GCAGC	6 cut(s)	34, 298, 319, 346, 349, 358
Bsh1285I	CGRYCG	2 cut(s)	117, 342
BshFI	GGCC	2 cut(s)	235, 341
BshTI	ACCGGT	1 cut(s)	116
BsiEI	CGRYCG	2 cut(s)	117, 342
BsiSI	CCGG	2 cut(s)	117, 338
BslFI	GGGAC	1 cut(s)	31
BsmFI	GGGAC	1 cut(s)	31
BsmI	GAATGC	1 cut(s)	227
BsnI	GGCC	2 cut(s)	235, 341
Bsp143I	GATC	1 cut(s)	268
BspACI	CCGC	6 cut(s)	141, 314, 342, 345, 348, 351
BspANI	GGCC	2 cut(s)	235, 341
BspCNI	CTCAG	2 cut(s)	172, 367
BspHI	TCATGA	1 cut(s)	154
BspLI	GGNNCC	1 cut(s)	318
BspPI	GGATC	1 cut(s)	276
BsrFI	RCCGGY	1 cut(s)	116
BsrI	ACTGG	1 cut(s)	19
BssAI	RCCGGY	1 cut(s)	116
BssMI	GATC	1 cut(s)	268
Bst4CI	ACNGT	1 cut(s)	38
BstC8I	GCNNGC	2 cut(s)	130, 255
BstDEI	CTNAG	2 cut(s)	180, 375
BstF5I	GGATG	2 cut(s)	165, 302
BstH2I	RGCGCY	1 cut(s)	312
BstHHI	GCGC	2 cut(s)	52, 311
BstKTI	GATC	1 cut(s)	271
BstMBI	GATC	1 cut(s)	268
BstMCI	CGRYCG	2 cut(s)	117, 342
BstMWI	GCNNNNNNNGC	9 cut(s)	254, 338, 341, 347, 350, 356, 359, 368, 371
BstV1I	GCAGC	6 cut(s)	34, 298, 319, 346, 349, 358
BstX2I	RGATCY	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	268
BstZI	CGGCCG	1 cut(s)	339
BsuRI	GGCC	2 cut(s)	235, 341
BtsCI	GGATG	2 cut(s)	165, 302
BtsI	GCAGTG	2 cut(s)	174, 354
BtsIMutI	CAGTG	2 cut(s)	174, 354
Cac8I	GCNNGC	2 cut(s)	130, 255
CciI	TCATGA	1 cut(s)	154
CfoI	GCGC	2 cut(s)	52, 311
Cfr10I	RCCGGY	1 cut(s)	116
Cfr13I	GGNCC	1 cut(s)	234
Csp6I	GTAC	1 cut(s)	12
CspAI	ACCGGT	1 cut(s)	116
CviAII	CATG	4 cut(s)	145, 155, 286, 418
CviJI	RGCY	8 cut(s)	96, 235, 253, 317, 332, 341, 388, 429
CviKI_1	RGCY	8 cut(s)	96, 235, 253, 317, 332, 341, 388, 429
CviQI	GTAC	1 cut(s)	12
DdeI	CTNAG	2 cut(s)	180, 375
DpnI	GATC	1 cut(s)	270
DpnII	GATC	1 cut(s)	268
EaeI	YGGCCR	1 cut(s)	339
EagI	CGGCCG	1 cut(s)	339
EclXI	CGGCCG	1 cut(s)	339
Eco52I	CGGCCG	1 cut(s)	339
FaeI	CATG	4 cut(s)	148, 158, 289, 421
FaiI	YATR	5 cut(s)	146, 156, 287, 329, 419
FaqI	GGGAC	1 cut(s)	31
FatI	CATG	4 cut(s)	144, 154, 285, 417
FblI	GTMKAC	1 cut(s)	113
FokI	GGATG	2 cut(s)	152, 309
FspBI	CTAG	1 cut(s)	439
GlaI	GCGC	2 cut(s)	51, 310
HaeII	RGCGCY	1 cut(s)	312
HaeIII	GGCC	2 cut(s)	235, 341
HapII	CCGG	2 cut(s)	117, 338
HhaI	GCGC	2 cut(s)	52, 311
Hin1II	CATG	4 cut(s)	148, 158, 289, 421
Hin6I	GCGC	2 cut(s)	50, 309
HinP1I	GCGC	2 cut(s)	50, 309
HincII	GTYRAC	1 cut(s)	114
HindII	GTYRAC	1 cut(s)	114
HindIII	AAGCTT	1 cut(s)	251
HinfI	GANTC	3 cut(s)	19, 83, 148
HpaII	CCGG	2 cut(s)	117, 338
HphI	GGTGA	3 cut(s)	131, 274, 287
Hpy166II	GTNNAC	3 cut(s)	114, 217, 278
Hpy188III	TCNNGA	1 cut(s)	155
Hpy8I	GTNNAC	3 cut(s)	114, 217, 278
HpyAV	CCTTC	2 cut(s)	79, 259
HpyCH4III	ACNGT	1 cut(s)	38
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	2 cut(s)	209, 257
HpyF10VI	GCNNNNNNNGC	9 cut(s)	254, 338, 341, 347, 350, 356, 359, 368, 371
HpyF3I	CTNAG	2 cut(s)	180, 375
HpySE526I	ACGT	1 cut(s)	219
Hsp92II	CATG	4 cut(s)	148, 158, 289, 421
HspAI	GCGC	2 cut(s)	50, 309
Kzo9I	GATC	1 cut(s)	268
LmnI	GCTCC	4 cut(s)	137, 322, 340, 370
LpnPI	CCDG	7 cut(s)	130, 217, 333, 351, 381, 402, 408
Lsp1109I	GCAGC	6 cut(s)	34, 298, 319, 346, 349, 358
LweI	GCATC	1 cut(s)	174
MaeI	CTAG	1 cut(s)	439
MaeII	ACGT	1 cut(s)	219
MaeIII	GTNAC	1 cut(s)	38
MalI	GATC	1 cut(s)	270
MboI	GATC	1 cut(s)	268
MboII	GAAGA	5 cut(s)	143, 196, 274, 394, 413
MflI	RGATCY	1 cut(s)	268
MluCI	AATT	1 cut(s)	123
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	1 cut(s)	274
MnlI	CCTC	5 cut(s)	33, 63, 251, 370, 391
MspI	CCGG	2 cut(s)	117, 338
Mva1269I	GAATGC	1 cut(s)	227
MwoI	GCNNNNNNNGC	9 cut(s)	254, 338, 341, 347, 350, 356, 359, 368, 371
NdeII	GATC	1 cut(s)	268
NlaIII	CATG	4 cut(s)	148, 158, 289, 421
NlaIV	GGNNCC	1 cut(s)	318
PagI	TCATGA	1 cut(s)	154
PctI	GAATGC	1 cut(s)	227
PfeI	GAWTC	2 cut(s)	83, 148
PinAI	ACCGGT	1 cut(s)	116
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PspN4I	GGNNCC	1 cut(s)	318
PspPI	GGNCC	1 cut(s)	234
PsuI	RGATCY	1 cut(s)	268
RsaI	GTAC	1 cut(s)	13
RsaNI	GTAC	1 cut(s)	12
SalI	GTCGAC	1 cut(s)	112
Sau3AI	GATC	1 cut(s)	268
Sau96I	GGNCC	1 cut(s)	234
ScaI	AGTACT	1 cut(s)	13
SchI	GAGTC	1 cut(s)	13
SetI	ASST	5 cut(s)	98, 222, 243, 255, 431
SfaNI	GCATC	1 cut(s)	174
Sse9I	AATT	1 cut(s)	123
SsiI	CCGC	6 cut(s)	141, 314, 342, 345, 348, 351
SspMI	CTAG	1 cut(s)	439
TaaI	ACNGT	1 cut(s)	38
TaiI	ACGT	1 cut(s)	222
TaqI	TCGA	1 cut(s)	113
TasI	AATT	1 cut(s)	123
TatI	WGTACW	1 cut(s)	11
TauI	GCSGC	6 cut(s)	143, 317, 344, 347, 350, 353
TfiI	GAWTC	2 cut(s)	83, 148
TscAI	CASTG	2 cut(s)	181, 361
TseI	GCWGC	6 cut(s)	47, 311, 332, 359, 362, 371
TspDTI	ATGAA	2 cut(s)	143, 302
TspRI	CASTG	2 cut(s)	181, 361
XmiI	GTMKAC	1 cut(s)	113
XspI	CTAG	1 cut(s)	439
ZrmI	AGTACT	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.