Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005247

Physical Location & Seq

Genomic Coordinates Reverse (-)

12663605 .. 12664202

Gene Structure 598 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g19560.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGTCGACCGGTGAAGTTGCTTGCTCCTATGCCGCCATGATTCTTCACGACGATGGCATCCCAATCACAGCAGAGAAGATTGCTACCTTGTTGAAATCTGCAAACGTGAAAGTAGATTCCTTGTGGCCAAGCCTCTTTGCCAAGCTTGCTGAGAAGAGGGACGTTATTGGGGACCTTATTATGAATCCTGTTGGTTCGGCTCCATCATCTCCGGTTGCTATGGCTGCTCCTGCTTCTCCAGCTGTTGAGGAGAAGAAGAAGAAGGAAGAAGAACCAGAGGAAGGAAGTGATGATGACATGCCGCTATTCGACTTGTTTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0008047 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009893 GO:0009987 GO:0010467 GO:0010562 GO:0010604 GO:0015934 GO:0016020 GO:0019207 GO:0019209 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0022625 GO:0022626 GO:0030234 GO:0030295 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0034641 GO:0034645 GO:0042325 GO:0042327 GO:0042788 GO:0043043 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043549 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071944 GO:0080090 GO:0098772 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

108

Amino Acids

11.42

Weight (kDa)

4.42

Isoelectric Point (pI)

67.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_60s	PF00428	22 - 106	3e-19	60s Acidic ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005247)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24510
fragaria_vesca	FvH4_3g19530 FvH4_3g19540 FvH4_3g19560 FvH4_4g09050 FvH4_7g32851
malus_domestica	MD01G1228000.v1.1 MD07G1298500.v1.1
prunus_persica	Prupe.2G318300_v2.0.a1
pyrus_communis	pycom07g27090
rosa_chinensis	RchiOBHm_Chr1g0382801 RchiOBHm_Chr5g0032771
rosa_laevigata	RLG00000026158 RLG00000033427
rosa_multiflora	Rmu_sc0003389.1_g000003
rosa_roxburghii	Rroxscaffold_1G00047330 Rroxscaffold_1G00047790 Rroxscaffold_4G00277890 Rroxscaffold_5G00373420
rosa_rugosa	Rorug04G0253800 Rorug05G0133600
rosa_samantha	Rh1AG461300 Rh1BG418000 Rh1CG431800 Rh1DG450200 Rh5AG226400 Rh5CG255200
rosa_wichuraiana	Rw1G041040 Rw5G020760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	2 cut(s)	33, 302
AcoI	YGGCCR	1 cut(s)	125
AfiI	CCNNNNNNNGG	1 cut(s)	281
AgeI	ACCGGT	1 cut(s)	8
AgsI	TTSAA	2 cut(s)	94, 320
AluBI	AGCT	2 cut(s)	145, 242
AluI	AGCT	2 cut(s)	145, 242
AoxI	GGCC	1 cut(s)	125
ApeKI	GCWGC	1 cut(s)	224
AsiGI	ACCGGT	1 cut(s)	8
AspS9I	GGNCC	1 cut(s)	172
AsuHPI	GGTGA	1 cut(s)	23
AvaII	GGWCC	1 cut(s)	172
BalI	TGGCCA	1 cut(s)	127
BbvI	GCAGC	1 cut(s)	211
BccI	CCATC	2 cut(s)	47, 211
BisI	GCNGC	3 cut(s)	33, 225, 302
BlsI	GCNGC	3 cut(s)	34, 226, 303
Bme18I	GGWCC	1 cut(s)	172
BmgT120I	GGNCC	1 cut(s)	172
BmiI	GGNNCC	2 cut(s)	173, 201
BmsI	GCATC	1 cut(s)	66
BpmI	CTGGAG	1 cut(s)	222
BsaWI	WCCGGW	2 cut(s)	8, 211
Bsc4I	CCNNNNNNNGG	1 cut(s)	281
Bse118I	RCCGGY	1 cut(s)	8
BseGI	GGATG	1 cut(s)	57
BseLI	CCNNNNNNNGG	1 cut(s)	281
BseMII	CTCAG	1 cut(s)	141
BseRI	GAGGAG	1 cut(s)	263
BseXI	GCAGC	1 cut(s)	211
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	1 cut(s)	127
BshTI	ACCGGT	1 cut(s)	8
BsiEI	CGRYCG	1 cut(s)	9
BsiSI	CCGG	2 cut(s)	9, 212
BslFI	GGGAC	2 cut(s)	173, 185
BslI	CCNNNNNNNGG	1 cut(s)	281
BsmFI	GGGAC	2 cut(s)	173, 185
BsnI	GGCC	1 cut(s)	127
BspACI	CCGC	2 cut(s)	33, 302
BspANI	GGCC	1 cut(s)	127
BspCNI	CTCAG	1 cut(s)	142
BspLI	GGNNCC	2 cut(s)	173, 201
BsrFI	RCCGGY	1 cut(s)	8
BssAI	RCCGGY	1 cut(s)	8
Bst6I	CTCTTC	1 cut(s)	149
BstC8I	GCNNGC	2 cut(s)	22, 147
BstDEI	CTNAG	1 cut(s)	150
BstF5I	GGATG	1 cut(s)	57
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	4 cut(s)	146, 224, 230, 239
BstNSI	RCATGY	1 cut(s)	301
BstV1I	GCAGC	1 cut(s)	211
BsuRI	GGCC	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	57
Cac8I	GCNNGC	2 cut(s)	22, 147
Cfr10I	RCCGGY	1 cut(s)	8
Cfr13I	GGNCC	1 cut(s)	172
CspAI	ACCGGT	1 cut(s)	8
CviAII	CATG	2 cut(s)	37, 298
CviJI	RGCY	6 cut(s)	127, 132, 145, 200, 224, 242
CviKI_1	RGCY	6 cut(s)	127, 132, 145, 200, 224, 242
DdeI	CTNAG	1 cut(s)	150
EaeI	YGGCCR	1 cut(s)	125
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
Eco47I	GGWCC	1 cut(s)	172
EcoO109I	RGGNCCY	1 cut(s)	172
FaeI	CATG	2 cut(s)	40, 301
FaiI	YATR	5 cut(s)	30, 38, 182, 221, 299
FaqI	GGGAC	2 cut(s)	173, 185
FatI	CATG	2 cut(s)	36, 297
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	3 cut(s)	33, 225, 302
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	3 cut(s)	33, 225, 302
GluI	GCNGC	3 cut(s)	33, 225, 302
GsuI	CTGGAG	1 cut(s)	222
HaeIII	GGCC	1 cut(s)	127
HapII	CCGG	2 cut(s)	9, 212
Hin1II	CATG	2 cut(s)	40, 301
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HindIII	AAGCTT	1 cut(s)	143
HinfI	GANTC	3 cut(s)	40, 116, 184
HpaII	CCGG	2 cut(s)	9, 212
HphI	GGTGA	1 cut(s)	23
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188III	TCNNGA	1 cut(s)	47
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	2 cut(s)	256, 275
HpyCH4IV	ACGT	2 cut(s)	105, 162
HpyCH4V	TGCA	1 cut(s)	101
HpyF10VI	GCNNNNNNNGC	4 cut(s)	146, 224, 230, 239
HpyF3I	CTNAG	1 cut(s)	150
HpySE526I	ACGT	2 cut(s)	105, 162
Hsp92II	CATG	2 cut(s)	40, 301
LmnI	GCTCC	3 cut(s)	29, 205, 232
LpnPI	CCDG	6 cut(s)	22, 201, 225, 243, 252, 288
Lsp1109I	GCAGC	1 cut(s)	211
LweI	GCATC	1 cut(s)	66
MaeII	ACGT	2 cut(s)	105, 162
MboII	GAAGA	8 cut(s)	35, 88, 166, 265, 268, 271, 278, 281
MlsI	TGGCCA	1 cut(s)	127
MluNI	TGGCCA	1 cut(s)	127
MnlI	CCTC	4 cut(s)	143, 150, 241, 271
Mox20I	TGGCCA	1 cut(s)	127
MscI	TGGCCA	1 cut(s)	127
MslI	CAYNNNNRTG	1 cut(s)	51
Msp20I	TGGCCA	1 cut(s)	127
MspA1I	CMGCKG	1 cut(s)	242
MspI	CCGG	2 cut(s)	9, 212
MwoI	GCNNNNNNNGC	4 cut(s)	146, 224, 230, 239
NlaIII	CATG	2 cut(s)	40, 301
NlaIV	GGNNCC	2 cut(s)	173, 201
NspI	RCATGY	1 cut(s)	301
PfeI	GAWTC	3 cut(s)	40, 116, 184
PinAI	ACCGGT	1 cut(s)	8
PkrI	GCNGC	3 cut(s)	34, 226, 303
PpuMI	RGGWCCY	1 cut(s)	172
Psp5II	RGGWCCY	1 cut(s)	172
PspN4I	GGNNCC	2 cut(s)	173, 201
PspPI	GGNCC	1 cut(s)	172
PspPPI	RGGWCCY	1 cut(s)	172
PvuII	CAGCTG	1 cut(s)	242
RseI	CAYNNNNRTG	1 cut(s)	51
SalI	GTCGAC	1 cut(s)	4
SatI	GCNGC	3 cut(s)	33, 225, 302
Sau96I	GGNCC	1 cut(s)	172
SetI	ASST	6 cut(s)	89, 108, 147, 165, 177, 244
SfaNI	GCATC	1 cut(s)	66
SinI	GGWCC	1 cut(s)	172
SmiMI	CAYNNNNRTG	1 cut(s)	51
SsiI	CCGC	2 cut(s)	33, 302
TaiI	ACGT	2 cut(s)	108, 165
TaqI	TCGA	2 cut(s)	5, 309
TauI	GCSGC	2 cut(s)	35, 304
TfiI	GAWTC	3 cut(s)	40, 116, 184
TseI	GCWGC	1 cut(s)	224
TspDTI	ATGAA	1 cut(s)	197
VpaK11BI	GGWCC	1 cut(s)	172
XceI	RCATGY	1 cut(s)	301
XmiI	GTMKAC	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.