Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014041

Physical Location & Seq

Genomic Coordinates Forward (+)

8378759 .. 8383401

Gene Structure 4643 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G24530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGCGGCAAAGCTGATATCCACCGGTTTCCGTCATACTACTTTGCCGGAAAACTATGTCCGGCCAATCTCCGACCGTCCACGTCTCTCTGAAGTCTCTCAACTCGAAGATTTCCCTCTCATCGATCTCTCTTCCACTGATCGATCTTTTCTCATCCAACAAATCCACCAAGCTTGTGCCCGATTCGGATTTTTTCAGGTCATAAATCACGGAGTTAACAAACAAATAATAGATGAGATGGTGAGTGTTGCGCGTGAGTTCTTTAGCATGTCTATGGAAGAAAAAATGAAGCTATATTCAGACGATCCAACGAAGACAACAAGATTATCGACGAGCTTCAATGTGAAGAAAGAAGAAGTCAACAATTGGAGAGACTATCTAAGACTCCATTGTTATCCTATCCACAAGTATGTCAATGAGTGGCCGTCAAACCCTCCTTCTTTCAAGGAAATAGTAAGTAAATACAGTAGAGAAGTAAGAGAAGTGGGATTTAAAATAGAGGAATTAATATCAGAGAGCTTAGGTTTAGAAAAAGATTACATGAAGAAAGTGCTTGGTGAACAAGGTCAACACATGGCAGTCAACTATTATCCTCCATGTCCTGAACCTGAGCTCACTTACGGTTTACCTGCTCATACCGACCCAAACGCCCTAACCATTCTTCTTCAAGACACTACTGTTTGCGGTCTCCAGATCTTGATCGACGGTCAGTGGTTCGCCGTTAATCCACATCCTGATGCTTTTGTCATCAACATAGGTGACCAGTTACAGGCATTAAGTAATGGAGTATACAAAAGTGTTTGGCATCGCGCTGTAACAAACACAGAAAATCCGAGACTATCGGTCGCATCGTTTCTGTGCCCAGCTGACTGTGCTGTCATGAGCCCGGCCAAGCCCTTGTGGGAAGCTGAGGACGATGAAACGAAACCAGTCTACAAAGATTTCACTTATGCAGAGTATTACAAGAAGTTTTGGAGTAGGAATCTGGACCAAGAACATTGCCTCGAGAATTTTCTAAACAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002229 GO:0002239 GO:0003674 GO:0003824 GO:0004497 GO:0006082 GO:0006725 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009696 GO:0009719 GO:0009725 GO:0009751 GO:0009812 GO:0009813 GO:0009987 GO:0010033 GO:0010150 GO:0010817 GO:0014070 GO:0016054 GO:0016491 GO:0016705 GO:0016706 GO:0016709 GO:0016999 GO:0017001 GO:0017144 GO:0018958 GO:0019336 GO:0019439 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0033759 GO:0034785 GO:0042221 GO:0042440 GO:0042445 GO:0042447 GO:0042493 GO:0042537 GO:0042737 GO:0042742 GO:0043207 GO:0043436 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0046148 GO:0046244 GO:0046395 GO:0046677 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051213 GO:0051552 GO:0051553 GO:0051704 GO:0051707 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072329 GO:0090693 GO:0098542 GO:0099402 GO:1901360 GO:1901361 GO:1901575 GO:1901576 GO:1901615 GO:1901616 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

341

Amino Acids

39.36

Weight (kDa)

5.44

Isoelectric Point (pI)

45.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	39 - 144	5.7e-28	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	190 - 288	6.8e-34	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014041)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24530
fragaria_vesca	FvH4_7g32980
malus_domestica	MD01G1228800.v1.1 MD07G1299900.v1.1
prunus_persica	Prupe.2G319600_v2.0.a1
pyrus_communis	pycom01g23680 pycom07g27220
rosa_chinensis	RchiOBHm_Chr1g0382951
rosa_laevigata	RLG00000026146
rosa_multiflora	Rmu_sc0018693.1_g000007
rosa_roxburghii	Rroxscaffold_4G00277750
rosa_rugosa	Rorug01G0437300
rosa_samantha	Rh1AG462800 Rh1BG419800 Rh1CG433600 Rh1DG451800
rosa_wichuraiana	Rw1G040920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	875
Acc36I	ACCTGC	1 cut(s)	637
AccI	GTMKAC	2 cut(s)	789, 933
AccII	CGCG	2 cut(s)	253, 810
AciI	CCGC	2 cut(s)	5, 684
AclWI	GGATC	1 cut(s)	299
AcoI	YGGCCR	3 cut(s)	62, 422, 888
AcsI	RAATTY	1 cut(s)	1009
AcuI	CTGAAG	1 cut(s)	111
AfiI	CCNNNNNNNGG	1 cut(s)	769
AgeI	ACCGGT	1 cut(s)	23
AgsI	TTSAA	3 cut(s)	340, 445, 668
AhdI	GACNNNNNGTC	1 cut(s)	842
AjiI	CACGTC	1 cut(s)	83
AluBI	AGCT	8 cut(s)	13, 173, 292, 336, 519, 613, 866, 908
AluI	AGCT	8 cut(s)	13, 173, 292, 336, 519, 613, 866, 908
Alw21I	GWGCWC	1 cut(s)	615
Alw26I	GTCTC	5 cut(s)	89, 100, 366, 692, 829
AlwI	GGATC	1 cut(s)	299
Ama87I	CYCGRG	1 cut(s)	1004
AoxI	GGCC	3 cut(s)	62, 422, 888
ApoI	RAATTY	1 cut(s)	1009
AseI	ATTAAT	1 cut(s)	506
AsiGI	ACCGGT	1 cut(s)	23
AspLEI	GCGC	2 cut(s)	253, 812
AspS9I	GGNCC	1 cut(s)	988
AsuC2I	CCSGG	1 cut(s)	887
AsuHPI	GGTGA	3 cut(s)	253, 569, 770
AvaI	CYCGRG	1 cut(s)	1004
AvaII	GGWCC	1 cut(s)	988
BaeGI	GKGCMC	2 cut(s)	181, 863
BanII	GRGCYC	2 cut(s)	615, 887
BbsI	GAAGAC	1 cut(s)	320
Bbv12I	GWGCWC	1 cut(s)	615
BbvCI	CCTCAGC	1 cut(s)	909
BccI	CCATC	1 cut(s)	232
BceAI	ACGGC	2 cut(s)	409, 704
BcnI	CCSGG	1 cut(s)	887
BcoDI	GTCTC	5 cut(s)	89, 100, 366, 692, 829
BfuAI	ACCTGC	1 cut(s)	637
BglII	AGATCT	1 cut(s)	693
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	1 cut(s)	887
Bme18I	GGWCC	1 cut(s)	988
BmeRI	GACNNNNNGTC	1 cut(s)	842
BmeT110I	CYCGRG	1 cut(s)	1004
BmgBI	CACGTC	1 cut(s)	83
BmgT120I	GGNCC	1 cut(s)	988
BmrFI	CCNGG	1 cut(s)	887
BmsI	GCATC	3 cut(s)	727, 814, 857
BpiI	GAAGAC	1 cut(s)	320
BpmI	CTGGAG	1 cut(s)	674
Bpu10I	CCTNAGC	3 cut(s)	520, 609, 909
BpuMI	CCSGG	1 cut(s)	887
Bsa29I	ATCGAT	2 cut(s)	123, 142
BsaBI	GATNNNNATC	1 cut(s)	698
BsaI	GGTCTC	1 cut(s)	692
BsaWI	WCCGGW	1 cut(s)	23
Bsc4I	CCNNNNNNNGG	1 cut(s)	769
Bse118I	RCCGGY	1 cut(s)	23
Bse1I	ACTGG	2 cut(s)	763, 929
Bse3DI	GCAATG	1 cut(s)	997
Bse8I	GATNNNNATC	1 cut(s)	698
BseCI	ATCGAT	2 cut(s)	123, 142
BseGI	GGATG	2 cut(s)	153, 730
BseJI	GATNNNNATC	1 cut(s)	698
BseLI	CCNNNNNNNGG	1 cut(s)	769
BseMI	GCAATG	1 cut(s)	997
BseMII	CTCAG	2 cut(s)	600, 900
BseNI	ACTGG	2 cut(s)	763, 929
BseSI	GKGCMC	2 cut(s)	181, 863
BseYI	CCCAGC	1 cut(s)	862
Bsh1236I	CGCG	2 cut(s)	253, 810
Bsh1285I	CGRYCG	2 cut(s)	76, 846
BshFI	GGCC	3 cut(s)	64, 424, 890
BshTI	ACCGGT	1 cut(s)	23
BshVI	ATCGAT	2 cut(s)	123, 142
BsiEI	CGRYCG	2 cut(s)	76, 846
BsiHKAI	GWGCWC	1 cut(s)	615
BsiHKCI	CYCGRG	1 cut(s)	1004
BsiSI	CCGG	4 cut(s)	24, 47, 61, 887
BslI	CCNNNNNNNGG	1 cut(s)	769
BsmAI	GTCTC	5 cut(s)	89, 100, 366, 692, 829
BsmBI	CGTCTC	1 cut(s)	89
BsnI	GGCC	3 cut(s)	64, 424, 890
Bso31I	GGTCTC	1 cut(s)	692
BsoBI	CYCGRG	1 cut(s)	1004
Bsp1286I	GDGCHC	4 cut(s)	181, 615, 863, 887
Bsp143I	GATC	6 cut(s)	124, 139, 143, 304, 693, 699
BspACI	CCGC	2 cut(s)	5, 684
BspANI	GGCC	3 cut(s)	64, 424, 890
BspCNI	CTCAG	2 cut(s)	601, 901
BspDI	ATCGAT	2 cut(s)	123, 142
BspFNI	CGCG	2 cut(s)	253, 810
BspHI	TCATGA	1 cut(s)	879
BspMI	ACCTGC	1 cut(s)	637
BspPI	GGATC	1 cut(s)	299
BspTNI	GGTCTC	1 cut(s)	692
BsrDI	GCAATG	1 cut(s)	997
BsrFI	RCCGGY	1 cut(s)	23
BsrI	ACTGG	2 cut(s)	763, 929
BssAI	RCCGGY	1 cut(s)	23
BssMI	GATC	6 cut(s)	124, 139, 143, 304, 693, 699
BssNAI	GTATAC	1 cut(s)	790
Bst1107I	GTATAC	1 cut(s)	790
Bst4CI	ACNGT	6 cut(s)	77, 467, 623, 679, 707, 872
Bst6I	CTCTTC	1 cut(s)	136
BstDEI	CTNAG	4 cut(s)	380, 520, 609, 909
BstEII	GGTNACC	1 cut(s)	758
BstF5I	GGATG	2 cut(s)	153, 730
BstFNI	CGCG	2 cut(s)	253, 810
BstHHI	GCGC	2 cut(s)	253, 812
BstKTI	GATC	6 cut(s)	127, 142, 146, 307, 696, 702
BstMAI	GTCTC	5 cut(s)	89, 100, 366, 692, 829
BstMBI	GATC	6 cut(s)	124, 139, 143, 304, 693, 699
BstMCI	CGRYCG	2 cut(s)	76, 846
BstMWI	GCNNNNNNNGC	1 cut(s)	872
BstNSI	RCATGY	1 cut(s)	271
BstPI	GGTNACC	1 cut(s)	758
BstSCI	CCNGG	1 cut(s)	885
BstSLI	GKGCMC	2 cut(s)	181, 863
BstUI	CGCG	2 cut(s)	253, 810
BstV2I	GAAGAC	1 cut(s)	320
BstX2I	RGATCY	1 cut(s)	693
BstYI	RGATCY	1 cut(s)	693
BstZ17I	GTATAC	1 cut(s)	790
Bsu15I	ATCGAT	2 cut(s)	123, 142
BsuRI	GGCC	3 cut(s)	64, 424, 890
BsuTUI	ATCGAT	2 cut(s)	123, 142
BtgZI	GCGATG	1 cut(s)	791
BtrI	CACGTC	1 cut(s)	83
BtsCI	GGATG	2 cut(s)	153, 730
BtsIMutI	CAGTG	2 cut(s)	135, 716
BveI	ACCTGC	1 cut(s)	637
CciI	TCATGA	1 cut(s)	879
CfoI	GCGC	2 cut(s)	253, 812
Cfr10I	RCCGGY	1 cut(s)	23
Cfr13I	GGNCC	1 cut(s)	988
ClaI	ATCGAT	2 cut(s)	123, 142
CspAI	ACCGGT	1 cut(s)	23
CspCI	CAANNNNNGTGG	2 cut(s)	155, 190
CviAII	CATG	5 cut(s)	268, 541, 574, 597, 880
DdeI	CTNAG	4 cut(s)	380, 520, 609, 909
DpnI	GATC	6 cut(s)	126, 141, 145, 306, 695, 701
DpnII	GATC	6 cut(s)	124, 139, 143, 304, 693, 699
DraI	TTTAAA	1 cut(s)	493
DrdI	GACNNNNNNGTC	1 cut(s)	875
DriI	GACNNNNNGTC	1 cut(s)	842
DseDI	GACNNNNNNGTC	1 cut(s)	875
EaeI	YGGCCR	3 cut(s)	62, 422, 888
Eam1104I	CTCTTC	1 cut(s)	136
Eam1105I	GACNNNNNGTC	1 cut(s)	842
EarI	CTCTTC	1 cut(s)	136
Ecl136II	GAGCTC	1 cut(s)	613
Eco24I	GRGCYC	2 cut(s)	615, 887
Eco31I	GGTCTC	1 cut(s)	692
Eco32I	GATATC	1 cut(s)	18
Eco47I	GGWCC	1 cut(s)	988
Eco53kI	GAGCTC	1 cut(s)	613
Eco57I	CTGAAG	1 cut(s)	111
Eco88I	CYCGRG	1 cut(s)	1004
Eco91I	GGTNACC	1 cut(s)	758
EcoICRI	GAGCTC	1 cut(s)	613
EcoO65I	GGTNACC	1 cut(s)	758
EcoRV	GATATC	1 cut(s)	18
EcoT38I	GRGCYC	2 cut(s)	615, 887
Esp3I	CGTCTC	1 cut(s)	89
FaeI	CATG	5 cut(s)	271, 544, 577, 600, 883
FatI	CATG	5 cut(s)	267, 540, 573, 596, 879
FblI	GTMKAC	2 cut(s)	789, 933
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	2 cut(s)	140, 717
FriOI	GRGCYC	2 cut(s)	615, 887
Fsp4HI	GCNGC	1 cut(s)	6
GlaI	GCGC	2 cut(s)	252, 811
GluI	GCNGC	1 cut(s)	6
GsaI	CCCAGC	1 cut(s)	866
GsuI	CTGGAG	1 cut(s)	674
HaeIII	GGCC	3 cut(s)	64, 424, 890
HapII	CCGG	4 cut(s)	24, 47, 61, 887
HhaI	GCGC	2 cut(s)	253, 812
Hin1II	CATG	5 cut(s)	271, 544, 577, 600, 883
Hin6I	GCGC	2 cut(s)	251, 810
HinP1I	GCGC	2 cut(s)	251, 810
HincII	GTYRAC	4 cut(s)	217, 361, 569, 583
HindII	GTYRAC	4 cut(s)	217, 361, 569, 583
HindIII	AAGCTT	1 cut(s)	171
HinfI	GANTC	3 cut(s)	183, 384, 982
HpaI	GTTAAC	1 cut(s)	217
HpaII	CCGG	4 cut(s)	24, 47, 61, 887
HphI	GGTGA	3 cut(s)	253, 569, 770
Hpy166II	GTNNAC	9 cut(s)	80, 217, 361, 560, 569, 583, 626, 790, 934
Hpy188I	TCNGA	6 cut(s)	73, 91, 188, 301, 514, 834
Hpy188III	TCNNGA	8 cut(s)	602, 668, 691, 697, 734, 880, 986, 1006
Hpy8I	GTNNAC	9 cut(s)	80, 217, 361, 560, 569, 583, 626, 790, 934
Hpy99I	CGWCG	2 cut(s)	334, 707
HpyAV	CCTTC	1 cut(s)	447
HpyCH4III	ACNGT	6 cut(s)	77, 467, 623, 679, 707, 872
HpyCH4IV	ACGT	1 cut(s)	82
HpyCH4V	TGCA	1 cut(s)	953
HpyF10VI	GCNNNNNNNGC	1 cut(s)	872
HpyF3I	CTNAG	4 cut(s)	380, 520, 609, 909
HpySE526I	ACGT	1 cut(s)	82
Hsp92II	CATG	5 cut(s)	271, 544, 577, 600, 883
HspAI	GCGC	2 cut(s)	251, 810
KspAI	GTTAAC	1 cut(s)	217
Kzo9I	GATC	6 cut(s)	124, 139, 143, 304, 693, 699
LweI	GCATC	3 cut(s)	727, 814, 857
MaeII	ACGT	1 cut(s)	82
MaeIII	GTNAC	3 cut(s)	758, 765, 814
MalI	GATC	6 cut(s)	126, 141, 145, 306, 695, 701
MboI	GATC	6 cut(s)	124, 139, 143, 304, 693, 699
MboII	GAAGA	9 cut(s)	119, 123, 290, 325, 358, 365, 556, 653, 656
MfeI	CAATTG	1 cut(s)	364
MflI	RGATCY	1 cut(s)	693
MhlI	GDGCHC	4 cut(s)	181, 615, 863, 887
MluCI	AATT	3 cut(s)	364, 503, 1009
MlyI	GAGTC	1 cut(s)	378
MmeI	TCCRAC	3 cut(s)	96, 181, 332
MnlI	CCTC	6 cut(s)	126, 444, 493, 603, 904, 1013
MseI	TTAA	5 cut(s)	216, 492, 506, 723, 776
MslI	CAYNNNNRTG	3 cut(s)	272, 408, 735
MspA1I	CMGCKG	1 cut(s)	866
MspI	CCGG	4 cut(s)	24, 47, 61, 887
MspR9I	CCNGG	1 cut(s)	887
MunI	CAATTG	1 cut(s)	364
MvnI	CGCG	2 cut(s)	253, 810
MwoI	GCNNNNNNNGC	1 cut(s)	872
NciI	CCSGG	1 cut(s)	887
NdeII	GATC	6 cut(s)	124, 139, 143, 304, 693, 699
NlaIII	CATG	5 cut(s)	271, 544, 577, 600, 883
NmuCI	GTSAC	1 cut(s)	758
NspI	RCATGY	1 cut(s)	271
PaeR7I	CTCGAG	1 cut(s)	1004
PagI	TCATGA	1 cut(s)	879
PcsI	WCGNNNNNNNCGW	1 cut(s)	848
PfeI	GAWTC	2 cut(s)	183, 982
PinAI	ACCGGT	1 cut(s)	23
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	378
PpsI	GAGTC	1 cut(s)	378
PshBI	ATTAAT	1 cut(s)	506
Psp124BI	GAGCTC	1 cut(s)	615
PspEI	GGTNACC	1 cut(s)	758
PspFI	CCCAGC	1 cut(s)	862
PspPI	GGNCC	1 cut(s)	988
PsuI	RGATCY	1 cut(s)	693
PvuII	CAGCTG	1 cut(s)	866
RseI	CAYNNNNRTG	3 cut(s)	272, 408, 735
SacI	GAGCTC	1 cut(s)	615
SaqAI	TTAA	5 cut(s)	216, 492, 506, 723, 776
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	6 cut(s)	124, 139, 143, 304, 693, 699
Sau96I	GGNCC	1 cut(s)	988
SchI	GAGTC	1 cut(s)	378
ScrFI	CCNGG	1 cut(s)	887
SduI	GDGCHC	4 cut(s)	181, 615, 863, 887
SfaNI	GCATC	3 cut(s)	727, 814, 857
Sfr274I	CTCGAG	1 cut(s)	1004
SinI	GGWCC	1 cut(s)	988
SlaI	CTCGAG	1 cut(s)	1004
SmiMI	CAYNNNNRTG	3 cut(s)	272, 408, 735
SmlI	CTYRAG	1 cut(s)	1004
SmoI	CTYRAG	1 cut(s)	1004
Sse9I	AATT	3 cut(s)	364, 503, 1009
SsiI	CCGC	2 cut(s)	5, 684
SstI	GAGCTC	1 cut(s)	615
StyD4I	CCNGG	1 cut(s)	885
TaaI	ACNGT	6 cut(s)	77, 467, 623, 679, 707, 872
TaiI	ACGT	1 cut(s)	85
TaqI	TCGA	6 cut(s)	105, 123, 142, 329, 702, 1005
TaqII	GACCGA	1 cut(s)	832
TasI	AATT	3 cut(s)	364, 503, 1009
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	183, 982
Tru1I	TTAA	5 cut(s)	216, 492, 506, 723, 776
Tru9I	TTAA	5 cut(s)	216, 492, 506, 723, 776
TscAI	CASTG	2 cut(s)	142, 716
TseFI	GTSAC	1 cut(s)	758
Tsp45I	GTSAC	1 cut(s)	758
TspDTI	ATGAA	3 cut(s)	302, 557, 933
TspGWI	ACGGA	2 cut(s)	20, 225
TspRI	CASTG	2 cut(s)	142, 716
VpaK11BI	GGWCC	1 cut(s)	988
VspI	ATTAAT	1 cut(s)	506
XapI	RAATTY	1 cut(s)	1009
XceI	RCATGY	1 cut(s)	271
XhoI	CTCGAG	1 cut(s)	1004
XmiI	GTMKAC	2 cut(s)	789, 933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.