Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0014041

Physical Location & Seq

Genomic Coordinates Reverse (-)

53589321 .. 53590650

Gene Structure 1330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0437300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGTCAAATGAAAGTGCAGCAGCGGATTCCGATCCCAACTCCGGCGTTGATCCTTACCAGCGCCTCCAGATAGCACGCAATCCCGACGGCAGCATCACGCGCTTGTTCAAAAGTCCAGACGCCCCGCCCTCATCTGATCCCAAGCTTCCCACTCCAGTTCTCACCAAAGACATCCCCATCAACCAATCAAATAACACCTGGCTTCGACTGTTCCTCCCCCGCCATGTACTGGACCAAACCTCACCAACTACCAAGCTCCCTCTCGTCGTTTATTACCATGGTGGAGGCTTCATATTACTTAGCGCAGCCTCAACCATTTTCCATGATTTCTGTTTCAACTTTGCAGCCGGCGTCCCCGTGATCGTCGCATCTGTCGAGTACAGGTTGGCTCCTGAGCACCGGCTGCCGGCGGCTTATGATGATGCAGTGGAGGCGCTTCACTGGATCAAAACCAGCCAAGATGATTGGTTGAGAGACTACGCTGACCTCTCCAATTGTTTCCTTATGGGATCCAGTGCTGGGGGTAACATAGCCTACAATGCGGGACTTCGTGCGGCTGCTGAGGGCATTGATCTTCTCCACCCGTTGAAGATTAGAGGGCTGATATTGGTGCAACCGTATTTCGGGGGGAATCGAAGGACTAGTTCAGAGTTGAGGTTGGTGAACAACCCTGTTTTGGCGCTAAGTGTCTGTGATCTCATGTGGGACTTGTCGTTGCCTATCGGGGCTGACCGTGATCACGAGTATTGCAATCCAATGGCGGGTGGCGATTCTAATGGCTTTGATCAAGTGAAAGCACTTGGGTGGAAAATCTTGGTGAGTGGCTCTGATGGAGACCCGCTGATCGATCATCAGATTGAGCTGGTGAAGATGTTGGAGGCAAAAGGTGTACAAGTGGTGAGTCAGTTTATCGAAGGAGGTTATCATGGGGCTCAAGATGTTGAACCCTCCAACGCCAAGGATGTGTTTGTGCTTGTTAAACATTTCATATTTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002229 GO:0002239 GO:0003674 GO:0003824 GO:0004497 GO:0006082 GO:0006725 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009696 GO:0009719 GO:0009725 GO:0009751 GO:0009812 GO:0009813 GO:0009987 GO:0010033 GO:0010150 GO:0010817 GO:0014070 GO:0016054 GO:0016491 GO:0016705 GO:0016706 GO:0016709 GO:0016999 GO:0017001 GO:0017144 GO:0018958 GO:0019336 GO:0019439 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0033759 GO:0034785 GO:0042221 GO:0042440 GO:0042445 GO:0042447 GO:0042493 GO:0042537 GO:0042737 GO:0042742 GO:0043207 GO:0043436 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0046148 GO:0046244 GO:0046395 GO:0046677 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051213 GO:0051552 GO:0051553 GO:0051704 GO:0051707 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072329 GO:0090693 GO:0098542 GO:0099402 GO:1901360 GO:1901361 GO:1901575 GO:1901576 GO:1901615 GO:1901616 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

332

Amino Acids

36.26

Weight (kDa)

5.2

Isoelectric Point (pI)

40.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BD-FAE	PF20434	83 - 190	8.6e-13	BD-FAE
Abhydrolase_3	PF07859	89 - 311	2e-52	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014041)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24530
fragaria_vesca	FvH4_7g32980
malus_domestica	MD01G1228800.v1.1 MD07G1299900.v1.1
prunus_persica	Prupe.2G319600_v2.0.a1
pyrus_communis	pycom01g23680 pycom07g27220
rosa_chinensis	RchiOBHm_Chr1g0382951
rosa_laevigata	RLG00000026146
rosa_multiflora	Rmu_sc0018693.1_g000007
rosa_roxburghii	Rroxscaffold_4G00277750
rosa_rugosa	Rorug01G0437300
rosa_samantha	Rh1AG462800 Rh1BG419800 Rh1CG433600 Rh1DG451800
rosa_wichuraiana	Rw1G040920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	229
AccII	CGCG	1 cut(s)	100
AciI	CCGC	8 cut(s)	23, 125, 220, 410, 542, 554, 761, 839
AclWI	GGATC	6 cut(s)	26, 44, 131, 452, 504, 517
AcyI	GRCGYC	2 cut(s)	120, 351
AfaI	GTAC	3 cut(s)	228, 380, 891
AfiI	CCNNNNNNNGG	7 cut(s)	41, 229, 406, 519, 623, 676, 761
AgsI	TTSAA	4 cut(s)	109, 337, 589, 944
AhlI	ACTAGT	1 cut(s)	641
AjnI	CCWGG	1 cut(s)	197
AleI	CACNNNNGTG	1 cut(s)	802
AluBI	AGCT	3 cut(s)	145, 256, 862
AluI	AGCT	3 cut(s)	145, 256, 862
Alw21I	GWGCWC	1 cut(s)	399
Alw26I	GTCTC	2 cut(s)	468, 828
AlwI	GGATC	6 cut(s)	26, 44, 131, 452, 504, 517
ApeKI	GCWGC	7 cut(s)	17, 20, 90, 305, 344, 403, 557
AspLEI	GCGC	5 cut(s)	63, 102, 305, 436, 682
AspS9I	GGNCC	1 cut(s)	232
AsuHPI	GGTGA	6 cut(s)	154, 234, 673, 829, 877, 910
AvaII	GGWCC	1 cut(s)	232
BamHI	GGATCC	1 cut(s)	509
BanII	GRGCYC	1 cut(s)	934
BauI	CACGAG	1 cut(s)	740
Bbv12I	GWGCWC	1 cut(s)	399
BbvCI	CCTCAGC	1 cut(s)	561
BbvI	GCAGC	7 cut(s)	29, 32, 102, 317, 356, 390, 544
BccI	CCATC	2 cut(s)	185, 824
BceAI	ACGGC	1 cut(s)	103
BciT130I	CCWGG	1 cut(s)	199
BclI	TGATCA	2 cut(s)	736, 784
BcoDI	GTCTC	2 cut(s)	468, 828
BcuI	ACTAGT	1 cut(s)	641
BfaI	CTAG	1 cut(s)	642
BfoI	RGCGCY	3 cut(s)	64, 437, 683
BisI	GCNGC	9 cut(s)	18, 21, 91, 306, 345, 404, 411, 555, 558
BlsI	GCNGC	9 cut(s)	19, 22, 92, 307, 346, 405, 412, 556, 559
Bme1390I	CCNGG	1 cut(s)	199
Bme18I	GGWCC	1 cut(s)	232
BmgT120I	GGNCC	1 cut(s)	232
BmiI	GGNNCC	2 cut(s)	390, 511
BmrFI	CCNGG	1 cut(s)	199
BmsI	GCATC	3 cut(s)	102, 377, 412
BpmI	CTGGAG	2 cut(s)	50, 138
Bpu10I	CCTNAGC	2 cut(s)	393, 561
BpuEI	CTTGAG	1 cut(s)	918
Bsa29I	ATCGAT	1 cut(s)	846
BsaBI	GATNNNNATC	1 cut(s)	30
BsaHI	GRCGYC	2 cut(s)	120, 351
BsaI	GGTCTC	1 cut(s)	828
BsaJI	CCNNGG	2 cut(s)	277, 957
BsaXI	ACNNNNNCTCC	2 cut(s)	198, 228
Bsc4I	CCNNNNNNNGG	7 cut(s)	41, 229, 406, 519, 623, 676, 761
Bse118I	RCCGGY	3 cut(s)	347, 399, 406
Bse1I	ACTGG	4 cut(s)	155, 234, 446, 513
Bse8I	GATNNNNATC	1 cut(s)	30
BseBI	CCWGG	1 cut(s)	199
BseCI	ATCGAT	1 cut(s)	846
BseDI	CCNNGG	2 cut(s)	277, 957
BseGI	GGATG	2 cut(s)	171, 967
BseJI	GATNNNNATC	1 cut(s)	30
BseLI	CCNNNNNNNGG	7 cut(s)	41, 229, 406, 519, 623, 676, 761
BseMII	CTCAG	2 cut(s)	384, 552
BseNI	ACTGG	4 cut(s)	155, 234, 446, 513
BseXI	GCAGC	7 cut(s)	29, 32, 102, 317, 356, 390, 544
BseYI	CCCAGC	1 cut(s)	518
BsgI	GTGCAG	1 cut(s)	36
Bsh1236I	CGCG	1 cut(s)	100
BshVI	ATCGAT	1 cut(s)	846
BsiHKAI	GWGCWC	1 cut(s)	399
BsiSI	CCGG	4 cut(s)	42, 348, 400, 407
BslFI	GGGAC	3 cut(s)	338, 558, 719
BslI	CCNNNNNNNGG	7 cut(s)	41, 229, 406, 519, 623, 676, 761
BsmAI	GTCTC	2 cut(s)	468, 828
BsmFI	GGGAC	3 cut(s)	338, 558, 719
Bso31I	GGTCTC	1 cut(s)	828
Bsp1286I	GDGCHC	2 cut(s)	399, 934
Bsp1407I	TGTACA	1 cut(s)	889
Bsp19I	CCATGG	1 cut(s)	277
BspACI	CCGC	8 cut(s)	23, 125, 220, 410, 542, 554, 761, 839
BspCNI	CTCAG	2 cut(s)	385, 553
BspDI	ATCGAT	1 cut(s)	846
BspFNI	CGCG	1 cut(s)	100
BspLI	GGNNCC	2 cut(s)	390, 511
BspPI	GGATC	6 cut(s)	26, 44, 131, 452, 504, 517
BspTNI	GGTCTC	1 cut(s)	828
BsrFI	RCCGGY	3 cut(s)	347, 399, 406
BsrGI	TGTACA	1 cut(s)	889
BsrI	ACTGG	4 cut(s)	155, 234, 446, 513
BssAI	RCCGGY	3 cut(s)	347, 399, 406
BssECI	CCNNGG	2 cut(s)	277, 957
BssNI	GRCGYC	2 cut(s)	120, 351
BssSI	CACGAG	1 cut(s)	740
BssT1I	CCWWGG	2 cut(s)	277, 957
Bst2BI	CACGAG	1 cut(s)	740
Bst2UI	CCWGG	1 cut(s)	199
Bst4CI	ACNGT	3 cut(s)	210, 618, 734
BstACI	GRCGYC	2 cut(s)	120, 351
BstAPI	GCANNNNNTGC	1 cut(s)	403
BstAUI	TGTACA	1 cut(s)	889
BstC8I	GCNNGC	3 cut(s)	76, 349, 408
BstDEI	CTNAG	4 cut(s)	299, 393, 561, 683
BstDSI	CCRYGG	1 cut(s)	277
BstF5I	GGATG	2 cut(s)	171, 967
BstFNI	CGCG	1 cut(s)	100
BstH2I	RGCGCY	3 cut(s)	64, 437, 683
BstHHI	GCGC	5 cut(s)	63, 102, 305, 436, 682
BstMAI	GTCTC	2 cut(s)	468, 828
BstMWI	GCNNNNNNNGC	4 cut(s)	99, 403, 431, 539
BstNI	CCWGG	1 cut(s)	199
BstSCI	CCNGG	1 cut(s)	197
BstUI	CGCG	1 cut(s)	100
BstV1I	GCAGC	7 cut(s)	29, 32, 102, 317, 356, 390, 544
BstX2I	RGATCY	1 cut(s)	509
BstYI	RGATCY	1 cut(s)	509
Bsu15I	ATCGAT	1 cut(s)	846
BsuTUI	ATCGAT	1 cut(s)	846
BtgI	CCRYGG	1 cut(s)	277
BtsCI	GGATG	2 cut(s)	171, 967
BtsI	GCAGTG	1 cut(s)	432
BtsIMutI	CAGTG	3 cut(s)	432, 439, 520
Cac8I	GCNNGC	3 cut(s)	76, 349, 408
CfoI	GCGC	5 cut(s)	63, 102, 305, 436, 682
Cfr10I	RCCGGY	3 cut(s)	347, 399, 406
Cfr13I	GGNCC	1 cut(s)	232
ClaI	ATCGAT	1 cut(s)	846
CseI	GACGC	2 cut(s)	128, 340
Csp6I	GTAC	3 cut(s)	227, 379, 890
CviAII	CATG	5 cut(s)	224, 278, 323, 700, 926
CviQI	GTAC	3 cut(s)	227, 379, 890
DdeI	CTNAG	4 cut(s)	299, 393, 561, 683
Eco130I	CCWWGG	2 cut(s)	277, 957
Eco24I	GRGCYC	1 cut(s)	934
Eco31I	GGTCTC	1 cut(s)	828
Eco47I	GGWCC	1 cut(s)	232
EcoRII	CCWGG	1 cut(s)	197
EcoT14I	CCWWGG	2 cut(s)	277, 957
EcoT38I	GRGCYC	1 cut(s)	934
ErhI	CCWWGG	2 cut(s)	277, 957
FaeI	CATG	5 cut(s)	227, 281, 326, 703, 929
FaqI	GGGAC	3 cut(s)	338, 558, 719
FatI	CATG	5 cut(s)	223, 277, 322, 699, 925
FauI	CCCGC	5 cut(s)	132, 227, 535, 754, 846
FbaI	TGATCA	2 cut(s)	736, 784
Fnu4HI	GCNGC	9 cut(s)	18, 21, 91, 306, 345, 404, 411, 555, 558
FokI	GGATG	2 cut(s)	158, 974
FriOI	GRGCYC	1 cut(s)	934
Fsp4HI	GCNGC	9 cut(s)	18, 21, 91, 306, 345, 404, 411, 555, 558
FspBI	CTAG	1 cut(s)	642
GlaI	GCGC	5 cut(s)	62, 101, 304, 435, 681
GluI	GCNGC	9 cut(s)	18, 21, 91, 306, 345, 404, 411, 555, 558
GsaI	CCCAGC	1 cut(s)	522
GsuI	CTGGAG	2 cut(s)	50, 138
HaeII	RGCGCY	3 cut(s)	64, 437, 683
HapII	CCGG	4 cut(s)	42, 348, 400, 407
HgaI	GACGC	2 cut(s)	128, 340
HhaI	GCGC	5 cut(s)	63, 102, 305, 436, 682
Hin1I	GRCGYC	2 cut(s)	120, 351
Hin1II	CATG	5 cut(s)	227, 281, 326, 703, 929
Hin6I	GCGC	5 cut(s)	61, 100, 303, 434, 680
HinP1I	GCGC	5 cut(s)	61, 100, 303, 434, 680
HindIII	AAGCTT	1 cut(s)	143
HinfI	GANTC	4 cut(s)	26, 631, 770, 901
HpaII	CCGG	4 cut(s)	42, 348, 400, 407
HphI	GGTGA	6 cut(s)	154, 234, 673, 829, 877, 910
Hpy166II	GTNNAC	2 cut(s)	664, 890
Hpy188I	TCNGA	5 cut(s)	31, 136, 649, 829, 855
Hpy188III	TCNNGA	6 cut(s)	67, 83, 116, 392, 740, 935
Hpy8I	GTNNAC	2 cut(s)	664, 890
Hpy99I	CGWCG	3 cut(s)	89, 269, 368
HpyAV	CCTTC	2 cut(s)	630, 908
HpyCH4III	ACNGT	3 cut(s)	210, 618, 734
HpyCH4V	TGCA	5 cut(s)	17, 344, 425, 613, 750
HpyF10VI	GCNNNNNNNGC	4 cut(s)	99, 403, 431, 539
HpyF3I	CTNAG	4 cut(s)	299, 393, 561, 683
Hsp92I	GRCGYC	2 cut(s)	120, 351
Hsp92II	CATG	5 cut(s)	227, 281, 326, 703, 929
HspAI	GCGC	5 cut(s)	61, 100, 303, 434, 680
KroI	GCCGGC	2 cut(s)	347, 406
KroNI	GCCGGC	2 cut(s)	349, 408
Ksp22I	TGATCA	2 cut(s)	736, 784
LmnI	GCTCC	2 cut(s)	261, 394
Lsp1109I	GCAGC	7 cut(s)	29, 32, 102, 317, 356, 390, 544
LweI	GCATC	3 cut(s)	102, 377, 412
MaeI	CTAG	1 cut(s)	642
MaeIII	GTNAC	1 cut(s)	524
MboII	GAAGA	3 cut(s)	566, 601, 880
MfeI	CAATTG	1 cut(s)	493
MflI	RGATCY	1 cut(s)	509
MhlI	GDGCHC	2 cut(s)	399, 934
MluCI	AATT	1 cut(s)	493
MlyI	GAGTC	1 cut(s)	910
MmeI	TCCRAC	2 cut(s)	855, 975
MroNI	GCCGGC	2 cut(s)	347, 406
MseI	TTAA	2 cut(s)	978, 997
MslI	CAYNNNNRTG	1 cut(s)	802
MspA1I	CMGCKG	2 cut(s)	23, 841
MspI	CCGG	4 cut(s)	42, 348, 400, 407
MspR9I	CCNGG	1 cut(s)	199
MunI	CAATTG	1 cut(s)	493
MvaI	CCWGG	1 cut(s)	199
MvnI	CGCG	1 cut(s)	100
MwoI	GCNNNNNNNGC	4 cut(s)	99, 403, 431, 539
NaeI	GCCGGC	2 cut(s)	349, 408
NcoI	CCATGG	1 cut(s)	277
NgoMIV	GCCGGC	2 cut(s)	347, 406
NlaIII	CATG	5 cut(s)	227, 281, 326, 703, 929
NlaIV	GGNNCC	2 cut(s)	390, 511
OliI	CACNNNNGTG	1 cut(s)	802
PcsI	WCGNNNNNNNCGW	1 cut(s)	372
PdiI	GCCGGC	2 cut(s)	349, 408
PfeI	GAWTC	3 cut(s)	26, 631, 770
PflMI	CCANNNNNTGG	1 cut(s)	229
PkrI	GCNGC	9 cut(s)	19, 22, 92, 307, 346, 405, 412, 556, 559
PleI	GAGTC	1 cut(s)	909
PpsI	GAGTC	1 cut(s)	909
Psp6I	CCWGG	1 cut(s)	197
PspFI	CCCAGC	1 cut(s)	518
PspGI	CCWGG	1 cut(s)	197
PspN4I	GGNNCC	2 cut(s)	390, 511
PspPI	GGNCC	1 cut(s)	232
PsuI	RGATCY	1 cut(s)	509
RsaI	GTAC	3 cut(s)	228, 380, 891
RsaNI	GTAC	3 cut(s)	227, 379, 890
RseI	CAYNNNNRTG	1 cut(s)	802
SaqAI	TTAA	2 cut(s)	978, 997
SatI	GCNGC	9 cut(s)	18, 21, 91, 306, 345, 404, 411, 555, 558
Sau96I	GGNCC	1 cut(s)	232
SchI	GAGTC	1 cut(s)	910
ScrFI	CCNGG	1 cut(s)	199
SduI	GDGCHC	2 cut(s)	399, 934
SfaNI	GCATC	3 cut(s)	102, 377, 412
SinI	GGWCC	1 cut(s)	232
SmiMI	CAYNNNNRTG	1 cut(s)	802
SmlI	CTYRAG	1 cut(s)	933
SmoI	CTYRAG	1 cut(s)	933
SpeI	ACTAGT	1 cut(s)	641
Sse9I	AATT	1 cut(s)	493
SsiI	CCGC	8 cut(s)	23, 125, 220, 410, 542, 554, 761, 839
SspMI	CTAG	1 cut(s)	642
StyD4I	CCNGG	1 cut(s)	197
StyI	CCWWGG	2 cut(s)	277, 957
TaaI	ACNGT	3 cut(s)	210, 618, 734
TaqI	TCGA	5 cut(s)	205, 375, 634, 846, 912
TasI	AATT	1 cut(s)	493
TatI	WGTACW	3 cut(s)	226, 378, 889
TauI	GCSGC	2 cut(s)	413, 557
TfiI	GAWTC	3 cut(s)	26, 631, 770
Tru1I	TTAA	2 cut(s)	978, 997
Tru9I	TTAA	2 cut(s)	978, 997
TscAI	CASTG	3 cut(s)	432, 446, 520
TseI	GCWGC	7 cut(s)	17, 20, 90, 305, 344, 403, 557
TspDTI	ATGAA	3 cut(s)	24, 280, 976
TspRI	CASTG	3 cut(s)	432, 446, 520
Van91I	CCANNNNNTGG	1 cut(s)	229
VpaK11BI	GGWCC	1 cut(s)	232
XspI	CTAG	1 cut(s)	642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.