Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018693.1

Orthogroup ID

OG0014041

Physical Location & Seq

Genomic Coordinates Forward (+)

26664 .. 27232

Gene Structure 569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018693.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atgggtgagcaagggcaacacatggctgtgaacttttacccaccatgtcctgaaccagagctcacttatgggctgccgggacacactgacccaaatgcactaaccattctgctccaagacctcggcgtttgtgggcttcaagtgctcaaagacggcaaatgggttgctgtcaatccccacccgaatgccttcgtcattaacatcggtgaccagttacaggctctaagtaatgggatttacaagagtgtgtggcaccgtgccattacgaacactgataaggcaaggctttcagtagcctcatttctgtgtccacaggacgatgcactgattagcccggcaaagactcttacagaggatggatctgcacccgtttatcggggctacacttacaccgagtattacaagaagttttggactaggaacttggaccaagagcattgtttggaactcttcaagaaccagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002229 GO:0002239 GO:0003674 GO:0003824 GO:0004497 GO:0006082 GO:0006725 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009696 GO:0009719 GO:0009725 GO:0009751 GO:0009812 GO:0009813 GO:0009987 GO:0010033 GO:0010150 GO:0010817 GO:0014070 GO:0016054 GO:0016491 GO:0016705 GO:0016706 GO:0016709 GO:0016999 GO:0017001 GO:0017144 GO:0018958 GO:0019336 GO:0019439 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0033759 GO:0034785 GO:0042221 GO:0042440 GO:0042445 GO:0042447 GO:0042493 GO:0042537 GO:0042737 GO:0042742 GO:0043207 GO:0043436 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0046148 GO:0046244 GO:0046395 GO:0046677 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051213 GO:0051552 GO:0051553 GO:0051704 GO:0051707 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072329 GO:0090693 GO:0098542 GO:0099402 GO:1901360 GO:1901361 GO:1901575 GO:1901576 GO:1901615 GO:1901616 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

154

Amino Acids

17.25

Weight (kDa)

5.65

Isoelectric Point (pI)

37.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014041)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24530
fragaria_vesca	FvH4_7g32980
malus_domestica	MD01G1228800.v1.1 MD07G1299900.v1.1
prunus_persica	Prupe.2G319600_v2.0.a1
pyrus_communis	pycom01g23680 pycom07g27220
rosa_chinensis	RchiOBHm_Chr1g0382951
rosa_laevigata	RLG00000026146
rosa_multiflora	Rmu_sc0018693.1_g000007
rosa_roxburghii	Rroxscaffold_4G00277750
rosa_rugosa	Rorug01G0437300
rosa_samantha	Rh1AG462800 Rh1BG419800 Rh1CG433600 Rh1DG451800
rosa_wichuraiana	Rw1G040920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	252
AclWI	GGATC	1 cut(s)	367
AfiI	CCNNNNNNNGG	2 cut(s)	217, 375
AgsI	TTSAA	2 cut(s)	140, 454
AluBI	AGCT	1 cut(s)	61
AluI	AGCT	1 cut(s)	61
Alw21I	GWGCWC	2 cut(s)	63, 147
AlwI	GGATC	1 cut(s)	367
ApeKI	GCWGC	1 cut(s)	73
Asp700I	GAANNNNTTC	1 cut(s)	188
AspS9I	GGNCC	1 cut(s)	427
AsuC2I	CCSGG	2 cut(s)	78, 335
AsuHPI	GGTGA	2 cut(s)	17, 218
AvaII	GGWCC	1 cut(s)	427
BanI	GGYRCC	1 cut(s)	252
BanII	GRGCYC	1 cut(s)	63
Bbv12I	GWGCWC	2 cut(s)	63, 147
BbvI	GCAGC	1 cut(s)	60
BccI	CCATC	1 cut(s)	350
BceAI	ACGGC	1 cut(s)	169
BcnI	CCSGG	2 cut(s)	78, 335
BfaI	CTAG	1 cut(s)	417
BisI	GCNGC	1 cut(s)	74
BlsI	GCNGC	1 cut(s)	75
Bme1390I	CCNGG	2 cut(s)	78, 335
Bme18I	GGWCC	1 cut(s)	427
BmgT120I	GGNCC	1 cut(s)	427
BmiI	GGNNCC	1 cut(s)	254
BmrFI	CCNGG	2 cut(s)	78, 335
BmsI	GCATC	1 cut(s)	310
BpuMI	CCSGG	2 cut(s)	78, 335
BsaJI	CCNNGG	1 cut(s)	121
Bsc4I	CCNNNNNNNGG	2 cut(s)	217, 375
Bse1I	ACTGG	2 cut(s)	211, 460
BseDI	CCNNGG	1 cut(s)	121
BseGI	GGATG	1 cut(s)	361
BseLI	CCNNNNNNNGG	2 cut(s)	217, 375
BseNI	ACTGG	2 cut(s)	211, 460
BseXI	GCAGC	1 cut(s)	60
BsgI	GTGCAG	1 cut(s)	348
BshNI	GGYRCC	1 cut(s)	252
BsiHKAI	GWGCWC	2 cut(s)	63, 147
BsiSI	CCGG	2 cut(s)	77, 335
BslFI	GGGAC	1 cut(s)	93
BslI	CCNNNNNNNGG	2 cut(s)	217, 375
BsmFI	GGGAC	1 cut(s)	93
BsmI	GAATGC	1 cut(s)	190
Bsp1286I	GDGCHC	2 cut(s)	63, 147
Bsp143I	GATC	1 cut(s)	359
BspLI	GGNNCC	1 cut(s)	254
BspPI	GGATC	1 cut(s)	367
BspT107I	GGYRCC	1 cut(s)	252
BsrI	ACTGG	2 cut(s)	211, 460
BssECI	CCNNGG	1 cut(s)	121
BssMI	GATC	1 cut(s)	359
Bst4CI	ACNGT	1 cut(s)	257
Bst6I	CTCTTC	1 cut(s)	455
BstDEI	CTNAG	1 cut(s)	224
BstEII	GGTNACC	1 cut(s)	206
BstF5I	GGATG	1 cut(s)	361
BstKTI	GATC	1 cut(s)	362
BstMBI	GATC	1 cut(s)	359
BstMWI	GCNNNNNNNGC	1 cut(s)	142
BstPI	GGTNACC	1 cut(s)	206
BstSCI	CCNGG	2 cut(s)	76, 333
BstV1I	GCAGC	1 cut(s)	60
BstX2I	RGATCY	1 cut(s)	359
BstYI	RGATCY	1 cut(s)	359
BtsCI	GGATG	1 cut(s)	361
BtsIMutI	CAGTG	3 cut(s)	84, 270, 323
Cfr13I	GGNCC	1 cut(s)	427
CviAII	CATG	2 cut(s)	22, 45
CviJI	RGCY	9 cut(s)	26, 61, 73, 136, 221, 286, 296, 333, 381
CviKI_1	RGCY	9 cut(s)	26, 61, 73, 136, 221, 286, 296, 333, 381
DdeI	CTNAG	1 cut(s)	224
DpnI	GATC	1 cut(s)	361
DpnII	GATC	1 cut(s)	359
Eam1104I	CTCTTC	1 cut(s)	455
EarI	CTCTTC	1 cut(s)	455
Ecl136II	GAGCTC	1 cut(s)	61
Eco24I	GRGCYC	1 cut(s)	63
Eco47I	GGWCC	1 cut(s)	427
Eco53kI	GAGCTC	1 cut(s)	61
Eco91I	GGTNACC	1 cut(s)	206
EcoICRI	GAGCTC	1 cut(s)	61
EcoO65I	GGTNACC	1 cut(s)	206
EcoT38I	GRGCYC	1 cut(s)	63
FaeI	CATG	2 cut(s)	25, 48
FaiI	YATR	3 cut(s)	23, 46, 69
FaqI	GGGAC	1 cut(s)	93
FatI	CATG	2 cut(s)	21, 44
Fnu4HI	GCNGC	1 cut(s)	74
FokI	GGATG	1 cut(s)	368
FriOI	GRGCYC	1 cut(s)	63
Fsp4HI	GCNGC	1 cut(s)	74
FspBI	CTAG	1 cut(s)	417
GluI	GCNGC	1 cut(s)	74
HapII	CCGG	2 cut(s)	77, 335
Hin1II	CATG	2 cut(s)	25, 48
HinfI	GANTC	1 cut(s)	343
HpaII	CCGG	2 cut(s)	77, 335
HphI	GGTGA	2 cut(s)	17, 218
Hpy166II	GTNNAC	2 cut(s)	31, 311
Hpy188III	TCNNGA	2 cut(s)	50, 454
Hpy8I	GTNNAC	2 cut(s)	31, 311
HpyAV	CCTTC	1 cut(s)	199
HpyCH4III	ACNGT	1 cut(s)	257
HpyCH4V	TGCA	3 cut(s)	98, 323, 365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	142
HpyF3I	CTNAG	1 cut(s)	224
Hsp92II	CATG	2 cut(s)	25, 48
Kzo9I	GATC	1 cut(s)	359
LmnI	GCTCC	1 cut(s)	117
LpnPI	CCDG	7 cut(s)	63, 69, 90, 203, 224, 299, 348
Lsp1109I	GCAGC	1 cut(s)	60
LweI	GCATC	1 cut(s)	310
MaeI	CTAG	1 cut(s)	417
MaeIII	GTNAC	2 cut(s)	206, 213
MalI	GATC	1 cut(s)	361
MboI	GATC	1 cut(s)	359
MboII	GAAGA	1 cut(s)	442
MflI	RGATCY	1 cut(s)	359
MhlI	GDGCHC	2 cut(s)	63, 147
MlyI	GAGTC	1 cut(s)	337
MnlI	CCTC	3 cut(s)	131, 307, 346
MroXI	GAANNNNTTC	1 cut(s)	188
MseI	TTAA	1 cut(s)	198
MslI	CAYNNNNRTG	3 cut(s)	26, 183, 304
MspI	CCGG	2 cut(s)	77, 335
MspR9I	CCNGG	2 cut(s)	78, 335
Mva1269I	GAATGC	1 cut(s)	190
MwoI	GCNNNNNNNGC	1 cut(s)	142
NciI	CCSGG	2 cut(s)	78, 335
NdeII	GATC	1 cut(s)	359
NlaIII	CATG	2 cut(s)	25, 48
NlaIV	GGNNCC	1 cut(s)	254
NmeAIII	GCCGAG	1 cut(s)	102
NmuCI	GTSAC	1 cut(s)	206
PctI	GAATGC	1 cut(s)	190
PdmI	GAANNNNTTC	1 cut(s)	188
PkrI	GCNGC	1 cut(s)	75
PleI	GAGTC	1 cut(s)	337
PpsI	GAGTC	1 cut(s)	337
Psp124BI	GAGCTC	1 cut(s)	63
PspEI	GGTNACC	1 cut(s)	206
PspN4I	GGNNCC	1 cut(s)	254
PspPI	GGNCC	1 cut(s)	427
PsuI	RGATCY	1 cut(s)	359
RseI	CAYNNNNRTG	3 cut(s)	26, 183, 304
SacI	GAGCTC	1 cut(s)	63
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	1 cut(s)	74
Sau3AI	GATC	1 cut(s)	359
Sau96I	GGNCC	1 cut(s)	427
SchI	GAGTC	1 cut(s)	337
ScrFI	CCNGG	2 cut(s)	78, 335
SduI	GDGCHC	2 cut(s)	63, 147
SetI	ASST	2 cut(s)	63, 123
SfaNI	GCATC	1 cut(s)	310
SinI	GGWCC	1 cut(s)	427
SmiMI	CAYNNNNRTG	3 cut(s)	26, 183, 304
SspMI	CTAG	1 cut(s)	417
SstI	GAGCTC	1 cut(s)	63
StyD4I	CCNGG	2 cut(s)	76, 333
TaaI	ACNGT	1 cut(s)	257
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TscAI	CASTG	3 cut(s)	91, 277, 330
TseFI	GTSAC	1 cut(s)	206
TseI	GCWGC	1 cut(s)	73
Tsp45I	GTSAC	1 cut(s)	206
TspRI	CASTG	3 cut(s)	91, 277, 330
VpaK11BI	GGWCC	1 cut(s)	427
XmnI	GAANNNNTTC	1 cut(s)	188
XspI	CTAG	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.