Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0014041

Physical Location & Seq

Genomic Coordinates Forward (+)

29820652 .. 29826021

Gene Structure 5370 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G319600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGAAACCAAAGTCCTCTCCTCCGGATTCAAATACGAAAACTTGCCGGAAGGTTATGTCAGACCAGAATCCGAGCGACCTCGCTTGTCTGAAGTCTCCGAATGCAAAAACATTCCTGTAATTAATTTGGCCTCGGAGAATAGAGCCGAAACTGTGCAGCAAGTTGGTGATGCTTGCAAGTCTTATGGCTTTTTTCAGGTTATCAATCATGGTGTGTCTACGGAAGCAGTGGAAAAGATGTTAGGGACGGCCACTGAGTTCTTTAGCCTTCCCGTGGAGGAAAAGATGAAGTTGTATTCAGATGATCCATCAAAGACGATGAGGCTTTCTACAAGTTTTAATGTGAAAAAGGAGAAGGTTCATAACTGGAGAGACTATCTCAGACTCCATTGCTATCCTCTGGAGAAGTACGTTCCAGAGTGGCCCTCCAATCCTTCTTCCTTCAAGGACATTGTGAGTAAGTACTCTGAAGAAGTTCGAGAACTGGGGTTCAGATTACAGGAGTTAATATCGGAGAGTTTAGGGCTGGAGAAGGATTACATAAAGAGTACGTTGGGTGAGCAAGGACAGCATATGGCCGTGAACTTTTACCCGCCATGTCCACAGCCCGAGCTGACTTATGGGCTGCCAGGACACACTGACCCAAATGCCCTAACAATTCTTCTCCAAGACCTTGAGGTTGCTGGCCTTCAAGTTCTCAAAGATGGCAAATGGATTGCTGTCAATCCCCACCCTAACGCTTTTGTCATTAACCTTGGCGACCAATTACAGGCCTTGAGTAATGGGATTTATAGGAGTGTGTGGCACCGTGCCATTACAAATACTGACAGAGCAAGGCTATCAGTGGCTTCATTCCTCTGCCCACAAGATGACGCACTGATCAGCCCAGCAAAGGCTCTTACAGATGATGGGTCTGCAGCCATTTATAGGGGCTACACGTACACAGAGTATTATAAGAAGTTTTGGACTAGGGACTTGAATCAAGAGCATTGTTTGGAGCTTTTCAAGACCGATCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002229 GO:0002239 GO:0003674 GO:0003824 GO:0004497 GO:0006082 GO:0006725 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009696 GO:0009719 GO:0009725 GO:0009751 GO:0009812 GO:0009813 GO:0009987 GO:0010033 GO:0010150 GO:0010817 GO:0014070 GO:0016054 GO:0016491 GO:0016705 GO:0016706 GO:0016709 GO:0016999 GO:0017001 GO:0017144 GO:0018958 GO:0019336 GO:0019439 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0033759 GO:0034785 GO:0042221 GO:0042440 GO:0042445 GO:0042447 GO:0042493 GO:0042537 GO:0042737 GO:0042742 GO:0043207 GO:0043436 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0046148 GO:0046244 GO:0046395 GO:0046677 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051213 GO:0051552 GO:0051553 GO:0051704 GO:0051707 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072329 GO:0090693 GO:0098542 GO:0099402 GO:1901360 GO:1901361 GO:1901575 GO:1901576 GO:1901615 GO:1901616 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

340

Amino Acids

38.59

Weight (kDa)

5.49

Isoelectric Point (pI)

39.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014041)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24530
fragaria_vesca	FvH4_7g32980
malus_domestica	MD01G1228800.v1.1 MD07G1299900.v1.1
prunus_persica	Prupe.2G319600_v2.0.a1
pyrus_communis	pycom01g23680 pycom07g27220
rosa_chinensis	RchiOBHm_Chr1g0382951
rosa_laevigata	RLG00000026146
rosa_multiflora	Rmu_sc0018693.1_g000007
rosa_roxburghii	Rroxscaffold_4G00277750
rosa_rugosa	Rorug01G0437300
rosa_samantha	Rh1AG462800 Rh1BG419800 Rh1CG433600 Rh1DG451800
rosa_wichuraiana	Rw1G040920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	954
AccB1I	GGYRCC	1 cut(s)	804
AccI	GTMKAC	1 cut(s)	218
AccIII	TCCGGA	1 cut(s)	23
AciI	CCGC	1 cut(s)	593
AclWI	GGATC	1 cut(s)	299
AcoI	YGGCCR	2 cut(s)	249, 576
AcuI	CTGAAG	2 cut(s)	111, 489
AfaI	GTAC	4 cut(s)	410, 464, 550, 941
AfiI	CCNNNNNNNGG	4 cut(s)	274, 769, 892, 927
AflIII	ACRYGT	1 cut(s)	936
AgsI	TTSAA	5 cut(s)	31, 445, 692, 979, 1006
AjnI	CCWGG	1 cut(s)	628
AluBI	AGCT	2 cut(s)	613, 1000
AluI	AGCT	2 cut(s)	613, 1000
Alw26I	GTCTC	2 cut(s)	100, 366
AlwI	GGATC	1 cut(s)	299
Ama87I	CYCGRG	1 cut(s)	608
Aor13HI	TCCGGA	1 cut(s)	23
AoxI	GGCC	6 cut(s)	129, 249, 422, 576, 685, 771
ApeKI	GCWGC	3 cut(s)	157, 625, 917
AseI	ATTAAT	1 cut(s)	123
Asp700I	GAANNNNTTC	1 cut(s)	474
AspS9I	GGNCC	1 cut(s)	423
AsuHPI	GGTGA	2 cut(s)	179, 569
AvaI	CYCGRG	1 cut(s)	608
BanI	GGYRCC	1 cut(s)	804
BbvI	GCAGC	3 cut(s)	169, 612, 929
BccI	CCATC	3 cut(s)	316, 698, 902
BceAI	ACGGC	2 cut(s)	264, 563
BciT130I	CCWGG	1 cut(s)	630
BclI	TGATCA	1 cut(s)	879
BcoDI	GTCTC	2 cut(s)	100, 366
BfaI	CTAG	1 cut(s)	969
BfmI	CTRYAG	1 cut(s)	915
BisI	GCNGC	3 cut(s)	158, 626, 918
BlsI	GCNGC	3 cut(s)	159, 627, 919
BmcAI	AGTACT	1 cut(s)	464
Bme1390I	CCNGG	1 cut(s)	630
BmeT110I	CYCGRG	1 cut(s)	608
BmgT120I	GGNCC	1 cut(s)	423
BmiI	GGNNCC	1 cut(s)	806
BmrFI	CCNGG	1 cut(s)	630
BmrI	ACTGGG	1 cut(s)	494
BmsI	GCATC	1 cut(s)	160
BmuI	ACTGGG	1 cut(s)	494
BplI	GAGNNNNNCTC	4 cut(s)	363, 395, 410, 442
BpmI	CTGGAG	3 cut(s)	388, 422, 548
BpuEI	CTTGAG	2 cut(s)	695, 796
BsaAI	YACGTR	1 cut(s)	939
BsaJI	CCNNGG	3 cut(s)	132, 273, 754
BsaWI	WCCGGW	1 cut(s)	23
Bsc4I	CCNNNNNNNGG	4 cut(s)	274, 769, 892, 927
Bse1I	ACTGG	2 cut(s)	371, 489
Bse3DI	GCAATG	1 cut(s)	388
BseAI	TCCGGA	1 cut(s)	23
BseBI	CCWGG	1 cut(s)	630
BseDI	CCNNGG	3 cut(s)	132, 273, 754
BseLI	CCNNNNNNNGG	4 cut(s)	274, 769, 892, 927
BseMI	GCAATG	1 cut(s)	388
BseMII	CTCAG	2 cut(s)	246, 394
BseNI	ACTGG	2 cut(s)	371, 489
BseRI	GAGGAG	1 cut(s)	10
BseXI	GCAGC	3 cut(s)	169, 612, 929
BseYI	CCCAGC	1 cut(s)	886
BsgI	GTGCAG	1 cut(s)	176
BshFI	GGCC	6 cut(s)	131, 251, 424, 578, 687, 773
BshNI	GGYRCC	1 cut(s)	804
BsiHKCI	CYCGRG	1 cut(s)	608
BsiSI	CCGG	2 cut(s)	24, 47
BslFI	GGGAC	2 cut(s)	259, 986
BslI	CCNNNNNNNGG	4 cut(s)	274, 769, 892, 927
BsmAI	GTCTC	2 cut(s)	100, 366
BsmFI	GGGAC	2 cut(s)	259, 986
BsmI	GAATGC	1 cut(s)	107
BsnI	GGCC	6 cut(s)	131, 251, 424, 578, 687, 773
BsoBI	CYCGRG	1 cut(s)	608
Bsp13I	TCCGGA	1 cut(s)	23
Bsp143I	GATC	3 cut(s)	304, 879, 1012
BspACI	CCGC	1 cut(s)	593
BspANI	GGCC	6 cut(s)	131, 251, 424, 578, 687, 773
BspCNI	CTCAG	2 cut(s)	247, 393
BspEI	TCCGGA	1 cut(s)	23
BspLI	GGNNCC	1 cut(s)	806
BspMAI	CTGCAG	1 cut(s)	919
BspPI	GGATC	1 cut(s)	299
BspT107I	GGYRCC	1 cut(s)	804
BsrDI	GCAATG	1 cut(s)	388
BsrI	ACTGG	2 cut(s)	371, 489
BssECI	CCNNGG	3 cut(s)	132, 273, 754
BssMI	GATC	3 cut(s)	304, 879, 1012
BssT1I	CCWWGG	1 cut(s)	754
Bst2UI	CCWGG	1 cut(s)	630
Bst4CI	ACNGT	2 cut(s)	154, 809
BstBAI	YACGTR	1 cut(s)	939
BstC8I	GCNNGC	2 cut(s)	175, 685
BstDEI	CTNAG	2 cut(s)	255, 380
BstDSI	CCRYGG	1 cut(s)	273
BstKTI	GATC	3 cut(s)	307, 882, 1015
BstMAI	GTCTC	2 cut(s)	100, 366
BstMBI	GATC	3 cut(s)	304, 879, 1012
BstMWI	GCNNNNNNNGC	1 cut(s)	568
BstNI	CCWGG	1 cut(s)	630
BstSCI	CCNGG	1 cut(s)	628
BstSFI	CTRYAG	1 cut(s)	915
BstV1I	GCAGC	3 cut(s)	169, 612, 929
BsuRI	GGCC	6 cut(s)	131, 251, 424, 578, 687, 773
BtgI	CCRYGG	1 cut(s)	273
BtsI	GCAGTG	1 cut(s)	234
BtsIMutI	CAGTG	5 cut(s)	234, 252, 636, 849, 875
Cac8I	GCNNGC	2 cut(s)	175, 685
Cfr13I	GGNCC	1 cut(s)	423
CseI	GACGC	1 cut(s)	881
Csp6I	GTAC	4 cut(s)	409, 463, 549, 940
CviAII	CATG	2 cut(s)	209, 597
CviQI	GTAC	4 cut(s)	409, 463, 549, 940
DdeI	CTNAG	2 cut(s)	255, 380
DpnI	GATC	3 cut(s)	306, 881, 1014
DpnII	GATC	3 cut(s)	304, 879, 1012
EaeI	YGGCCR	2 cut(s)	249, 576
Eco130I	CCWWGG	1 cut(s)	754
Eco147I	AGGCCT	1 cut(s)	773
Eco57I	CTGAAG	2 cut(s)	111, 489
Eco88I	CYCGRG	1 cut(s)	608
EcoRII	CCWGG	1 cut(s)	628
EcoT14I	CCWWGG	1 cut(s)	754
ErhI	CCWWGG	1 cut(s)	754
FaeI	CATG	2 cut(s)	212, 600
FaqI	GGGAC	2 cut(s)	259, 986
FatI	CATG	2 cut(s)	208, 596
FauI	CCCGC	1 cut(s)	600
FauNDI	CATATG	1 cut(s)	573
FbaI	TGATCA	1 cut(s)	879
FblI	GTMKAC	1 cut(s)	218
Fnu4HI	GCNGC	3 cut(s)	158, 626, 918
Fsp4HI	GCNGC	3 cut(s)	158, 626, 918
FspBI	CTAG	1 cut(s)	969
GluI	GCNGC	3 cut(s)	158, 626, 918
GsaI	CCCAGC	1 cut(s)	890
GsuI	CTGGAG	3 cut(s)	388, 422, 548
HaeIII	GGCC	6 cut(s)	131, 251, 424, 578, 687, 773
HapII	CCGG	2 cut(s)	24, 47
HgaI	GACGC	1 cut(s)	881
Hin1II	CATG	2 cut(s)	212, 600
HinfI	GANTC	4 cut(s)	27, 68, 384, 979
HpaII	CCGG	2 cut(s)	24, 47
HphI	GGTGA	2 cut(s)	179, 569
Hpy166II	GTNNAC	4 cut(s)	219, 583, 602, 942
Hpy188III	TCNNGA	6 cut(s)	24, 401, 416, 479, 983, 1006
Hpy8I	GTNNAC	4 cut(s)	219, 583, 602, 942
HpyAV	CCTTC	7 cut(s)	44, 278, 349, 444, 451, 526, 698
HpyCH4III	ACNGT	2 cut(s)	154, 809
HpyCH4IV	ACGT	3 cut(s)	411, 551, 938
HpyCH4V	TGCA	4 cut(s)	105, 157, 177, 917
HpyF10VI	GCNNNNNNNGC	1 cut(s)	568
HpyF3I	CTNAG	2 cut(s)	255, 380
HpySE526I	ACGT	3 cut(s)	411, 551, 938
Hsp92II	CATG	2 cut(s)	212, 600
Kpn2I	TCCGGA	1 cut(s)	23
Ksp22I	TGATCA	1 cut(s)	879
Kzo9I	GATC	3 cut(s)	304, 879, 1012
LmnI	GCTCC	1 cut(s)	997
Lsp1109I	GCAGC	3 cut(s)	169, 612, 929
LweI	GCATC	1 cut(s)	160
MaeI	CTAG	1 cut(s)	969
MaeII	ACGT	3 cut(s)	411, 551, 938
MalI	GATC	3 cut(s)	306, 881, 1014
MboI	GATC	3 cut(s)	304, 879, 1012
MboII	GAAGA	3 cut(s)	429, 482, 653
MluCI	AATT	4 cut(s)	120, 124, 657, 764
MlyI	GAGTC	1 cut(s)	378
MroI	TCCGGA	1 cut(s)	23
MroXI	GAANNNNTTC	1 cut(s)	474
MseI	TTAA	4 cut(s)	123, 339, 506, 750
MspI	CCGG	2 cut(s)	24, 47
MspR9I	CCNGG	1 cut(s)	630
Mva1269I	GAATGC	1 cut(s)	107
MvaI	CCWGG	1 cut(s)	630
MwoI	GCNNNNNNNGC	1 cut(s)	568
NdeI	CATATG	1 cut(s)	573
NdeII	GATC	3 cut(s)	304, 879, 1012
NlaIII	CATG	2 cut(s)	212, 600
NlaIV	GGNNCC	1 cut(s)	806
PceI	AGGCCT	1 cut(s)	773
PctI	GAATGC	1 cut(s)	107
PdmI	GAANNNNTTC	1 cut(s)	474
PfeI	GAWTC	3 cut(s)	27, 68, 979
PkrI	GCNGC	3 cut(s)	159, 627, 919
PleI	GAGTC	1 cut(s)	378
PpsI	GAGTC	1 cut(s)	378
Ppu21I	YACGTR	1 cut(s)	939
PshBI	ATTAAT	1 cut(s)	123
PsiI	TTATAA	1 cut(s)	954
Psp6I	CCWGG	1 cut(s)	628
PspFI	CCCAGC	1 cut(s)	886
PspGI	CCWGG	1 cut(s)	628
PspN4I	GGNNCC	1 cut(s)	806
PspPI	GGNCC	1 cut(s)	423
PstI	CTGCAG	1 cut(s)	919
RsaI	GTAC	4 cut(s)	410, 464, 550, 941
RsaNI	GTAC	4 cut(s)	409, 463, 549, 940
SaqAI	TTAA	4 cut(s)	123, 339, 506, 750
SatI	GCNGC	3 cut(s)	158, 626, 918
Sau3AI	GATC	3 cut(s)	304, 879, 1012
Sau96I	GGNCC	1 cut(s)	423
ScaI	AGTACT	1 cut(s)	464
SchI	GAGTC	1 cut(s)	378
ScrFI	CCNGG	1 cut(s)	630
SfaNI	GCATC	1 cut(s)	160
SfcI	CTRYAG	1 cut(s)	915
SmlI	CTYRAG	2 cut(s)	674, 775
SmoI	CTYRAG	2 cut(s)	674, 775
Sse9I	AATT	4 cut(s)	120, 124, 657, 764
SseBI	AGGCCT	1 cut(s)	773
SsiI	CCGC	1 cut(s)	593
SspMI	CTAG	1 cut(s)	969
StuI	AGGCCT	1 cut(s)	773
StyD4I	CCNGG	1 cut(s)	628
StyI	CCWWGG	1 cut(s)	754
TaaI	ACNGT	2 cut(s)	154, 809
TaiI	ACGT	3 cut(s)	414, 554, 941
TaqI	TCGA	1 cut(s)	478
TasI	AATT	4 cut(s)	120, 124, 657, 764
TatI	WGTACW	1 cut(s)	462
TfiI	GAWTC	3 cut(s)	27, 68, 979
Tru1I	TTAA	4 cut(s)	123, 339, 506, 750
Tru9I	TTAA	4 cut(s)	123, 339, 506, 750
TscAI	CASTG	5 cut(s)	234, 259, 643, 849, 882
TseI	GCWGC	3 cut(s)	157, 625, 917
TspDTI	ATGAA	3 cut(s)	302, 350, 840
TspGWI	ACGGA	1 cut(s)	236
TspRI	CASTG	5 cut(s)	234, 259, 643, 849, 882
VspI	ATTAAT	1 cut(s)	123
XmiI	GTMKAC	1 cut(s)	218
XmnI	GAANNNNTTC	1 cut(s)	474
XspI	CTAG	1 cut(s)	969
ZrmI	AGTACT	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.