Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0014041

Physical Location & Seq

Genomic Coordinates Reverse (-)

1036745 .. 1047208

Gene Structure 10464 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00277750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGATACAAAAGTCTTGTCCTCCGGAATCCGATACACAAACTTGCCGGAAAGTTATGTTAGACCGGAATCGGAGAGGCCCCGCTTGTCTGAAGTCTCAGTCTGCGAAAACATTCCCGTAATTGACTTGGATTCTCAGGACAGAGCTCAGACTGTTCAGCAAATTGGCGATGCGTGCAAGTACTATGGCTTTTTCCAGGCGATCAATCATGGAGTTTCAATGGAAGCAGTGGAAAAAATGTTAGGGGTTGCCAACGAGTTCTTCGAGCTCTCTGTTGAGGAAAAGATGAAGCTGTACTCAGATGATCCGTCGAAAACGATGAGACTTTCTACCAGTTTTAATGTGACAAAGGAGACGGTTCATAATTGGAGAGACTATCTTCGGCTCCACTGTCATCCTCTTGATAAGTACGTTCCTGAGTGGCCCTCCAATCCTCCTACCTTCAAGGACATTGTGAGCAGCTACTGTAAAGAAGTTCGAGAACTTGGGTACAGAATAGAGGAGTTAATATCAGAGAGCTTGGGTCTGGAGAAGCATTATATAAAGAACGTAATGGGTGAGCAAGGGCAACACATGGCTGTGAACTTTTACCCACCATGTCCTGAACCAGAGCTCACTTATGGGCTGCCGGGACACACTGACCCAAATGCACTAACCATTCTGCTCCAAGACCTCGGCGTTTGTGGGCTTCAAGTGCTCAAAGACGGCAAATGGGTTGCTGTCAATCCCCACCCGAATGCCTTCGTCATTAACATCGGTGACCAGTTACAGGCTCTAAGTAATGGGATTTACAAGAGTGTGTGGCACCGTGCCATTACGAACACTGATAAGGCAAGGCTTTCAGTAGCCTCATTTCTGTGTCCACAGGACGATGCACTGATTAGCCCGGCAAAGACTCTTACAGAGGATGGATCTGCAGCCGTTTATCGGGGCTACACTTACACTGAGTATTACAAGAAGTTTTGGACTAGGAACTTGGACCAAGAGCATTGTTTGGAACTCTTCAAGAACCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002229 GO:0002239 GO:0003674 GO:0003824 GO:0004497 GO:0006082 GO:0006725 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009696 GO:0009719 GO:0009725 GO:0009751 GO:0009812 GO:0009813 GO:0009987 GO:0010033 GO:0010150 GO:0010817 GO:0014070 GO:0016054 GO:0016491 GO:0016705 GO:0016706 GO:0016709 GO:0016999 GO:0017001 GO:0017144 GO:0018958 GO:0019336 GO:0019439 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0033759 GO:0034785 GO:0042221 GO:0042440 GO:0042445 GO:0042447 GO:0042493 GO:0042537 GO:0042737 GO:0042742 GO:0043207 GO:0043436 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0046148 GO:0046244 GO:0046395 GO:0046677 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051213 GO:0051552 GO:0051553 GO:0051704 GO:0051707 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072329 GO:0090693 GO:0098542 GO:0099402 GO:1901360 GO:1901361 GO:1901575 GO:1901576 GO:1901615 GO:1901616 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

338

Amino Acids

38.53

Weight (kDa)

5.43

Isoelectric Point (pI)

39.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	38 - 143	1.4e-28	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	190 - 288	3.6e-34	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014041)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24530
fragaria_vesca	FvH4_7g32980
malus_domestica	MD01G1228800.v1.1 MD07G1299900.v1.1
prunus_persica	Prupe.2G319600_v2.0.a1
pyrus_communis	pycom01g23680 pycom07g27220
rosa_chinensis	RchiOBHm_Chr1g0382951
rosa_laevigata	RLG00000026146
rosa_multiflora	Rmu_sc0018693.1_g000007
rosa_roxburghii	Rroxscaffold_4G00277750
rosa_rugosa	Rorug01G0437300
rosa_samantha	Rh1AG462800 Rh1BG419800 Rh1CG433600 Rh1DG451800
rosa_wichuraiana	Rw1G040920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	804
AccIII	TCCGGA	1 cut(s)	23
AciI	CCGC	1 cut(s)	82
AclWI	GGATC	2 cut(s)	299, 919
AcuI	CTGAAG	1 cut(s)	111
AfaI	GTAC	4 cut(s)	182, 296, 410, 491
AfiI	CCNNNNNNNGG	2 cut(s)	769, 927
AgsI	TTSAA	4 cut(s)	219, 445, 692, 1006
AjnI	CCWGG	1 cut(s)	195
AjuI	GAANNNNNNNTTGG	2 cut(s)	245, 277
AluBI	AGCT	6 cut(s)	146, 268, 292, 462, 519, 613
AluI	AGCT	6 cut(s)	146, 268, 292, 462, 519, 613
Alw21I	GWGCWC	4 cut(s)	148, 270, 615, 699
Alw26I	GTCTC	4 cut(s)	100, 316, 347, 366
AlwI	GGATC	2 cut(s)	299, 919
AlwNI	CAGNNNCTG	1 cut(s)	465
Aor13HI	TCCGGA	1 cut(s)	23
AoxI	GGCC	2 cut(s)	77, 422
ApeKI	GCWGC	3 cut(s)	459, 625, 917
ArsI	GACNNNNNNTTYG	1 cut(s)	34
Asp700I	GAANNNNTTC	2 cut(s)	111, 740
AspS9I	GGNCC	3 cut(s)	78, 423, 979
AsuC2I	CCSGG	2 cut(s)	630, 887
AsuHPI	GGTGA	2 cut(s)	569, 770
AvaII	GGWCC	1 cut(s)	979
BaeI	ACNNNNGTAYC	1 cut(s)	30
BanI	GGYRCC	1 cut(s)	804
BanII	GRGCYC	3 cut(s)	148, 270, 615
Bbv12I	GWGCWC	4 cut(s)	148, 270, 615, 699
BbvI	GCAGC	3 cut(s)	471, 612, 929
BccI	CCATC	1 cut(s)	902
BceAI	ACGGC	2 cut(s)	721, 905
BciT130I	CCWGG	1 cut(s)	197
BcnI	CCSGG	2 cut(s)	630, 887
BcoDI	GTCTC	4 cut(s)	100, 316, 347, 366
BfaI	CTAG	1 cut(s)	969
BfmI	CTRYAG	1 cut(s)	915
BisI	GCNGC	3 cut(s)	460, 626, 918
BlsI	GCNGC	3 cut(s)	461, 627, 919
BmcAI	AGTACT	1 cut(s)	182
Bme1390I	CCNGG	3 cut(s)	197, 630, 887
Bme18I	GGWCC	1 cut(s)	979
BmgT120I	GGNCC	3 cut(s)	78, 423, 979
BmiI	GGNNCC	3 cut(s)	80, 386, 806
BmrFI	CCNGG	3 cut(s)	197, 630, 887
BmsI	GCATC	2 cut(s)	160, 862
BplI	GAGNNNNNCTC	2 cut(s)	410, 442
BpmI	CTGGAG	1 cut(s)	548
BpuMI	CCSGG	2 cut(s)	630, 887
BsaJI	CCNNGG	1 cut(s)	673
BsaWI	WCCGGW	2 cut(s)	23, 64
Bsc4I	CCNNNNNNNGG	2 cut(s)	769, 927
Bse1I	ACTGG	3 cut(s)	333, 763, 1012
BseAI	TCCGGA	1 cut(s)	23
BseBI	CCWGG	1 cut(s)	197
BseDI	CCNNGG	1 cut(s)	673
BseGI	GGATG	2 cut(s)	394, 913
BseLI	CCNNNNNNNGG	2 cut(s)	769, 927
BseMII	CTCAG	6 cut(s)	111, 149, 161, 312, 408, 936
BseNI	ACTGG	3 cut(s)	333, 763, 1012
BseRI	GAGGAG	1 cut(s)	515
BseXI	GCAGC	3 cut(s)	471, 612, 929
BshFI	GGCC	2 cut(s)	79, 424
BshNI	GGYRCC	1 cut(s)	804
BsiHKAI	GWGCWC	4 cut(s)	148, 270, 615, 699
BsiSI	CCGG	5 cut(s)	24, 47, 65, 629, 887
BslFI	GGGAC	1 cut(s)	645
BslI	CCNNNNNNNGG	2 cut(s)	769, 927
BsmAI	GTCTC	4 cut(s)	100, 316, 347, 366
BsmBI	CGTCTC	1 cut(s)	347
BsmFI	GGGAC	1 cut(s)	645
BsmI	GAATGC	1 cut(s)	742
BsnI	GGCC	2 cut(s)	79, 424
Bsp1286I	GDGCHC	4 cut(s)	148, 270, 615, 699
Bsp13I	TCCGGA	1 cut(s)	23
Bsp143I	GATC	3 cut(s)	201, 304, 911
BspACI	CCGC	1 cut(s)	82
BspANI	GGCC	2 cut(s)	79, 424
BspCNI	CTCAG	6 cut(s)	110, 148, 160, 311, 409, 937
BspEI	TCCGGA	1 cut(s)	23
BspLI	GGNNCC	3 cut(s)	80, 386, 806
BspMAI	CTGCAG	1 cut(s)	919
BspPI	GGATC	2 cut(s)	299, 919
BspT107I	GGYRCC	1 cut(s)	804
BsrI	ACTGG	3 cut(s)	333, 763, 1012
BssECI	CCNNGG	1 cut(s)	673
BssMI	GATC	3 cut(s)	201, 304, 911
Bst2UI	CCWGG	1 cut(s)	197
Bst4CI	ACNGT	5 cut(s)	154, 358, 392, 467, 809
Bst6I	CTCTTC	1 cut(s)	1007
BstC8I	GCNNGC	1 cut(s)	175
BstDEI	CTNAG	7 cut(s)	97, 135, 147, 298, 417, 776, 945
BstEII	GGTNACC	1 cut(s)	758
BstF5I	GGATG	2 cut(s)	394, 913
BstKTI	GATC	3 cut(s)	204, 307, 914
BstMAI	GTCTC	4 cut(s)	100, 316, 347, 366
BstMBI	GATC	3 cut(s)	201, 304, 911
BstMWI	GCNNNNNNNGC	2 cut(s)	174, 694
BstNI	CCWGG	1 cut(s)	197
BstPI	GGTNACC	1 cut(s)	758
BstSCI	CCNGG	3 cut(s)	195, 628, 885
BstSFI	CTRYAG	1 cut(s)	915
BstV1I	GCAGC	3 cut(s)	471, 612, 929
BstX2I	RGATCY	1 cut(s)	911
BstYI	RGATCY	1 cut(s)	911
BsuRI	GGCC	2 cut(s)	79, 424
BtgZI	GCGATG	1 cut(s)	183
BtsCI	GGATG	2 cut(s)	394, 913
BtsI	GCAGTG	1 cut(s)	234
BtsIMutI	CAGTG	6 cut(s)	234, 388, 636, 822, 875, 942
Cac8I	GCNNGC	1 cut(s)	175
CaiI	CAGNNNCTG	1 cut(s)	465
Cfr13I	GGNCC	3 cut(s)	78, 423, 979
Csp6I	GTAC	4 cut(s)	181, 295, 409, 490
CviAII	CATG	3 cut(s)	209, 574, 597
CviQI	GTAC	4 cut(s)	181, 295, 409, 490
DdeI	CTNAG	7 cut(s)	97, 135, 147, 298, 417, 776, 945
DpnI	GATC	3 cut(s)	203, 306, 913
DpnII	GATC	3 cut(s)	201, 304, 911
Eam1104I	CTCTTC	1 cut(s)	1007
EarI	CTCTTC	1 cut(s)	1007
Ecl136II	GAGCTC	3 cut(s)	146, 268, 613
Eco24I	GRGCYC	3 cut(s)	148, 270, 615
Eco47I	GGWCC	1 cut(s)	979
Eco53kI	GAGCTC	3 cut(s)	146, 268, 613
Eco57I	CTGAAG	1 cut(s)	111
Eco91I	GGTNACC	1 cut(s)	758
EcoICRI	GAGCTC	3 cut(s)	146, 268, 613
EcoO109I	RGGNCCY	1 cut(s)	78
EcoO65I	GGTNACC	1 cut(s)	758
EcoRII	CCWGG	1 cut(s)	195
EcoT38I	GRGCYC	3 cut(s)	148, 270, 615
Esp3I	CGTCTC	1 cut(s)	347
FaeI	CATG	3 cut(s)	212, 577, 600
FaiI	YATR	9 cut(s)	57, 186, 210, 363, 540, 542, 575, 598, 621
FaqI	GGGAC	1 cut(s)	645
FatI	CATG	3 cut(s)	208, 573, 596
FauI	CCCGC	1 cut(s)	89
Fnu4HI	GCNGC	3 cut(s)	460, 626, 918
FokI	GGATG	2 cut(s)	381, 920
FriOI	GRGCYC	3 cut(s)	148, 270, 615
Fsp4HI	GCNGC	3 cut(s)	460, 626, 918
FspBI	CTAG	1 cut(s)	969
GluI	GCNGC	3 cut(s)	460, 626, 918
GsuI	CTGGAG	1 cut(s)	548
HaeIII	GGCC	2 cut(s)	79, 424
HapII	CCGG	5 cut(s)	24, 47, 65, 629, 887
Hin1II	CATG	3 cut(s)	212, 577, 600
HinfI	GANTC	4 cut(s)	27, 68, 131, 895
HpaII	CCGG	5 cut(s)	24, 47, 65, 629, 887
HphI	GGTGA	2 cut(s)	569, 770
Hpy166II	GTNNAC	2 cut(s)	583, 863
Hpy188I	TCNGA	6 cut(s)	32, 73, 91, 150, 301, 514
Hpy188III	TCNNGA	8 cut(s)	24, 137, 401, 416, 479, 527, 602, 1006
Hpy8I	GTNNAC	2 cut(s)	583, 863
Hpy99I	CGWCG	1 cut(s)	313
HpyAV	CCTTC	2 cut(s)	451, 751
HpyCH4III	ACNGT	5 cut(s)	154, 358, 392, 467, 809
HpyCH4IV	ACGT	2 cut(s)	411, 549
HpyCH4V	TGCA	4 cut(s)	177, 650, 875, 917
HpyF10VI	GCNNNNNNNGC	2 cut(s)	174, 694
HpyF3I	CTNAG	7 cut(s)	97, 135, 147, 298, 417, 776, 945
HpySE526I	ACGT	2 cut(s)	411, 549
Hsp92II	CATG	3 cut(s)	212, 577, 600
Kpn2I	TCCGGA	1 cut(s)	23
Kzo9I	GATC	3 cut(s)	201, 304, 911
LmnI	GCTCC	2 cut(s)	390, 669
Lsp1109I	GCAGC	3 cut(s)	471, 612, 929
LweI	GCATC	2 cut(s)	160, 862
MaeI	CTAG	1 cut(s)	969
MaeII	ACGT	2 cut(s)	411, 549
MaeIII	GTNAC	3 cut(s)	343, 758, 765
MalI	GATC	3 cut(s)	203, 306, 913
MboI	GATC	3 cut(s)	201, 304, 911
MboII	GAAGA	3 cut(s)	253, 371, 994
MflI	RGATCY	1 cut(s)	911
MhlI	GDGCHC	4 cut(s)	148, 270, 615, 699
MluCI	AATT	3 cut(s)	120, 162, 364
MlyI	GAGTC	1 cut(s)	889
MroI	TCCGGA	1 cut(s)	23
MroXI	GAANNNNTTC	2 cut(s)	111, 740
MseI	TTAA	3 cut(s)	339, 506, 750
MslI	CAYNNNNRTG	3 cut(s)	578, 735, 856
MspI	CCGG	5 cut(s)	24, 47, 65, 629, 887
MspR9I	CCNGG	3 cut(s)	197, 630, 887
Mva1269I	GAATGC	1 cut(s)	742
MvaI	CCWGG	1 cut(s)	197
MwoI	GCNNNNNNNGC	2 cut(s)	174, 694
NciI	CCSGG	2 cut(s)	630, 887
NdeII	GATC	3 cut(s)	201, 304, 911
NlaIII	CATG	3 cut(s)	212, 577, 600
NlaIV	GGNNCC	3 cut(s)	80, 386, 806
NmeAIII	GCCGAG	1 cut(s)	654
NmuCI	GTSAC	2 cut(s)	343, 758
PcsI	WCGNNNNNNNCGW	1 cut(s)	261
PctI	GAATGC	1 cut(s)	742
PdmI	GAANNNNTTC	2 cut(s)	111, 740
PfeI	GAWTC	3 cut(s)	27, 68, 131
PkrI	GCNGC	3 cut(s)	461, 627, 919
PleI	GAGTC	1 cut(s)	889
PpsI	GAGTC	1 cut(s)	889
Psp124BI	GAGCTC	3 cut(s)	148, 270, 615
Psp6I	CCWGG	1 cut(s)	195
PspEI	GGTNACC	1 cut(s)	758
PspGI	CCWGG	1 cut(s)	195
PspN4I	GGNNCC	3 cut(s)	80, 386, 806
PspPI	GGNCC	3 cut(s)	78, 423, 979
PstI	CTGCAG	1 cut(s)	919
PstNI	CAGNNNCTG	1 cut(s)	465
PsuI	RGATCY	1 cut(s)	911
RsaI	GTAC	4 cut(s)	182, 296, 410, 491
RsaNI	GTAC	4 cut(s)	181, 295, 409, 490
RseI	CAYNNNNRTG	3 cut(s)	578, 735, 856
SacI	GAGCTC	3 cut(s)	148, 270, 615
SaqAI	TTAA	3 cut(s)	339, 506, 750
SatI	GCNGC	3 cut(s)	460, 626, 918
Sau3AI	GATC	3 cut(s)	201, 304, 911
Sau96I	GGNCC	3 cut(s)	78, 423, 979
ScaI	AGTACT	1 cut(s)	182
SchI	GAGTC	1 cut(s)	889
ScrFI	CCNGG	3 cut(s)	197, 630, 887
SduI	GDGCHC	4 cut(s)	148, 270, 615, 699
SfaNI	GCATC	2 cut(s)	160, 862
SfcI	CTRYAG	1 cut(s)	915
SinI	GGWCC	1 cut(s)	979
SmiMI	CAYNNNNRTG	3 cut(s)	578, 735, 856
Sse9I	AATT	3 cut(s)	120, 162, 364
SsiI	CCGC	1 cut(s)	82
SspMI	CTAG	1 cut(s)	969
SstI	GAGCTC	3 cut(s)	148, 270, 615
StyD4I	CCNGG	3 cut(s)	195, 628, 885
TaaI	ACNGT	5 cut(s)	154, 358, 392, 467, 809
TaiI	ACGT	2 cut(s)	414, 552
TaqI	TCGA	3 cut(s)	264, 311, 478
TasI	AATT	3 cut(s)	120, 162, 364
TatI	WGTACW	2 cut(s)	180, 294
TfiI	GAWTC	3 cut(s)	27, 68, 131
Tru1I	TTAA	3 cut(s)	339, 506, 750
Tru9I	TTAA	3 cut(s)	339, 506, 750
TscAI	CASTG	6 cut(s)	234, 395, 643, 829, 882, 949
TseFI	GTSAC	2 cut(s)	343, 758
TseI	GCWGC	3 cut(s)	459, 625, 917
Tsp45I	GTSAC	2 cut(s)	343, 758
TspDTI	ATGAA	2 cut(s)	302, 350
TspGWI	ACGGA	1 cut(s)	297
TspRI	CASTG	6 cut(s)	234, 395, 643, 829, 882, 949
VpaK11BI	GGWCC	1 cut(s)	979
XmnI	GAANNNNTTC	2 cut(s)	111, 740
XspI	CTAG	1 cut(s)	969
ZrmI	AGTACT	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.