Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0014041

Physical Location & Seq

Genomic Coordinates Forward (+)

26989435 .. 26998401

Gene Structure 8967 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g27220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGATCCCTCACGTTGGACTGAAAACCATGAGACTTTCAACAAGTTTTAATCTGAACAAGGAGAAGGTTCATAACTGGAGAGATTATCTTCGACTCCATTGCTATCCTTTGGACAAGTACGTTCCTGAGTGGCCCTCCAATCCTTCTTCCTTCAAGGACACTGTGAGTAGTTACTGCACAGAGGTTCGAGAACTTGGACACAGGTTAGAGGAATTAATATCAGAGAGTTTAGGGCTGGAGAAAGATTACATAAAGAGCGCACTGGGCGAGCAAGGACAGCACATGGCGGTGAACTTTTACCCGCCATGTCCCCAACCCGAGCTGACTTATGGACTGCCGAGCCACACCGACCCAAATGCCCTAACAATTTTGCTCCAAGACCTTGGAGTTGCTGGCCTTCAAGTTCTCAAAGATGGCCAATGGGTTGCTGTCAATCCCCAACCTAATGCCTTTGTCATTAACATTGGTGACCAATTACAGGCCCTAAGTAATGGTATTTACAAGAGTGTGTGGCATCGAGCCGTTACCAATACTGAGAGAGCAAGGCTCTCAGTAGCTTCATTTCTCTGCCCACAAGACGATGCTCTAATAAGCCCACCAAAAGCTCTCACAGAGGATGGATCTGCAGCCATATATAGGGGCTACACTTATACTGAGTATTATAAAAAGTTTTGGACTCGGGACTTGGAGAAAGACCATTGTTTGGACCTTTTCAAGATCCAGCAGCAGCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002229 GO:0002239 GO:0003674 GO:0003824 GO:0004497 GO:0006082 GO:0006725 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009696 GO:0009719 GO:0009725 GO:0009751 GO:0009812 GO:0009813 GO:0009987 GO:0010033 GO:0010150 GO:0010817 GO:0014070 GO:0016054 GO:0016491 GO:0016705 GO:0016706 GO:0016709 GO:0016999 GO:0017001 GO:0017144 GO:0018958 GO:0019336 GO:0019439 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0033759 GO:0034785 GO:0042221 GO:0042440 GO:0042445 GO:0042447 GO:0042493 GO:0042537 GO:0042737 GO:0042742 GO:0043207 GO:0043436 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0046148 GO:0046244 GO:0046395 GO:0046677 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051213 GO:0051552 GO:0051553 GO:0051704 GO:0051707 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072329 GO:0090693 GO:0098542 GO:0099402 GO:1901360 GO:1901361 GO:1901575 GO:1901576 GO:1901615 GO:1901616 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

245

Amino Acids

27.79

Weight (kDa)

6.06

Isoelectric Point (pI)

39.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	93 - 191	9.6e-36	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014041)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24530
fragaria_vesca	FvH4_7g32980
malus_domestica	MD01G1228800.v1.1 MD07G1299900.v1.1
prunus_persica	Prupe.2G319600_v2.0.a1
pyrus_communis	pycom01g23680 pycom07g27220
rosa_chinensis	RchiOBHm_Chr1g0382951
rosa_laevigata	RLG00000026146
rosa_multiflora	Rmu_sc0018693.1_g000007
rosa_roxburghii	Rroxscaffold_4G00277750
rosa_rugosa	Rorug01G0437300
rosa_samantha	Rh1AG462800 Rh1BG419800 Rh1CG433600 Rh1DG451800
rosa_wichuraiana	Rw1G040920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	663
AccB7I	CCANNNNNTGG	1 cut(s)	703
AciI	CCGC	2 cut(s)	287, 302
AclWI	GGATC	2 cut(s)	628, 712
AcoI	YGGCCR	1 cut(s)	415
AfaI	GTAC	1 cut(s)	119
AfiI	CCNNNNNNNGG	4 cut(s)	14, 478, 636, 703
AgsI	TTSAA	4 cut(s)	39, 154, 401, 715
AluBI	AGCT	3 cut(s)	322, 557, 605
AluI	AGCT	3 cut(s)	322, 557, 605
Alw26I	GTCTC	1 cut(s)	25
AlwI	GGATC	2 cut(s)	628, 712
Ama87I	CYCGRG	2 cut(s)	317, 678
AoxI	GGCC	4 cut(s)	131, 394, 415, 480
ApeKI	GCWGC	3 cut(s)	626, 724, 727
AseI	ATTAAT	1 cut(s)	215
AspLEI	GCGC	1 cut(s)	260
AspS9I	GGNCC	3 cut(s)	132, 481, 706
AsuHPI	GGTGA	2 cut(s)	301, 479
AvaI	CYCGRG	2 cut(s)	317, 678
AvaII	GGWCC	1 cut(s)	706
BalI	TGGCCA	1 cut(s)	417
BbvI	GCAGC	1 cut(s)	638
BccI	CCATC	2 cut(s)	407, 611
BceAI	ACGGC	1 cut(s)	506
BcgI	CGANNNNNNTGC	4 cut(s)	81, 115, 338, 372
BcoDI	GTCTC	1 cut(s)	25
BfaI	CTAG	1 cut(s)	733
BfmI	CTRYAG	1 cut(s)	624
BisI	GCNGC	3 cut(s)	627, 725, 728
BlsI	GCNGC	3 cut(s)	628, 726, 729
Bme18I	GGWCC	1 cut(s)	706
BmeT110I	CYCGRG	2 cut(s)	317, 678
BmgT120I	GGNCC	3 cut(s)	132, 481, 706
BmrI	ACTGGG	1 cut(s)	272
BmsI	GCATC	2 cut(s)	523, 571
BmuI	ACTGGG	1 cut(s)	272
BplI	GAGNNNNNCTC	4 cut(s)	119, 151, 531, 563
BpmI	CTGGAG	2 cut(s)	97, 257
BsaJI	CCNNGG	1 cut(s)	382
Bsc4I	CCNNNNNNNGG	4 cut(s)	14, 478, 636, 703
Bse1I	ACTGG	2 cut(s)	80, 267
Bse3DI	GCAATG	1 cut(s)	97
BseDI	CCNNGG	1 cut(s)	382
BseGI	GGATG	1 cut(s)	622
BseLI	CCNNNNNNNGG	4 cut(s)	14, 478, 636, 703
BseMI	GCAATG	1 cut(s)	97
BseMII	CTCAG	4 cut(s)	117, 525, 564, 645
BseNI	ACTGG	2 cut(s)	80, 267
BseXI	GCAGC	1 cut(s)	638
BsgI	GTGCAG	1 cut(s)	160
BshFI	GGCC	4 cut(s)	133, 396, 417, 482
BsiHKCI	CYCGRG	2 cut(s)	317, 678
BslFI	GGGAC	2 cut(s)	294, 695
BslI	CCNNNNNNNGG	4 cut(s)	14, 478, 636, 703
BsmAI	GTCTC	1 cut(s)	25
BsmFI	GGGAC	2 cut(s)	294, 695
BsnI	GGCC	4 cut(s)	133, 396, 417, 482
BsoBI	CYCGRG	2 cut(s)	317, 678
Bsp143I	GATC	3 cut(s)	3, 620, 717
BspACI	CCGC	2 cut(s)	287, 302
BspANI	GGCC	4 cut(s)	133, 396, 417, 482
BspCNI	CTCAG	4 cut(s)	118, 526, 563, 646
BspMAI	CTGCAG	1 cut(s)	628
BspPI	GGATC	2 cut(s)	628, 712
BsrDI	GCAATG	1 cut(s)	97
BsrI	ACTGG	2 cut(s)	80, 267
BssECI	CCNNGG	1 cut(s)	382
BssMI	GATC	3 cut(s)	3, 620, 717
BssT1I	CCWWGG	1 cut(s)	382
Bst4CI	ACNGT	1 cut(s)	163
BstC8I	GCNNGC	2 cut(s)	269, 394
BstDEI	CTNAG	5 cut(s)	126, 485, 534, 550, 654
BstEII	GGTNACC	1 cut(s)	467
BstF5I	GGATG	1 cut(s)	622
BstHHI	GCGC	1 cut(s)	260
BstKTI	GATC	3 cut(s)	6, 623, 720
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	3 cut(s)	3, 620, 717
BstMWI	GCNNNNNNNGC	2 cut(s)	264, 277
BstPI	GGTNACC	1 cut(s)	467
BstSFI	CTRYAG	1 cut(s)	624
BstV1I	GCAGC	1 cut(s)	638
BstX2I	RGATCY	2 cut(s)	620, 717
BstXI	CCANNNNNNTGG	1 cut(s)	383
BstYI	RGATCY	2 cut(s)	620, 717
BsuRI	GGCC	4 cut(s)	133, 396, 417, 482
BtsCI	GGATG	1 cut(s)	622
BtsIMutI	CAGTG	2 cut(s)	159, 260
Cac8I	GCNNGC	2 cut(s)	269, 394
CfoI	GCGC	1 cut(s)	260
Cfr13I	GGNCC	3 cut(s)	132, 481, 706
Csp6I	GTAC	1 cut(s)	118
CviAII	CATG	3 cut(s)	28, 283, 306
CviQI	GTAC	1 cut(s)	118
DdeI	CTNAG	5 cut(s)	126, 485, 534, 550, 654
DpnI	GATC	3 cut(s)	5, 622, 719
DpnII	GATC	3 cut(s)	3, 620, 717
EaeI	YGGCCR	1 cut(s)	415
Eco130I	CCWWGG	1 cut(s)	382
Eco47I	GGWCC	1 cut(s)	706
Eco88I	CYCGRG	2 cut(s)	317, 678
Eco91I	GGTNACC	1 cut(s)	467
EcoO109I	RGGNCCY	1 cut(s)	481
EcoO65I	GGTNACC	1 cut(s)	467
EcoT14I	CCWWGG	1 cut(s)	382
ErhI	CCWWGG	1 cut(s)	382
FaeI	CATG	3 cut(s)	31, 286, 309
FaqI	GGGAC	2 cut(s)	294, 695
FatI	CATG	3 cut(s)	27, 282, 305
FauI	CCCGC	1 cut(s)	309
Fnu4HI	GCNGC	3 cut(s)	627, 725, 728
FokI	GGATG	1 cut(s)	629
Fsp4HI	GCNGC	3 cut(s)	627, 725, 728
FspBI	CTAG	1 cut(s)	733
GlaI	GCGC	1 cut(s)	259
GluI	GCNGC	3 cut(s)	627, 725, 728
GsuI	CTGGAG	2 cut(s)	97, 257
HaeIII	GGCC	4 cut(s)	133, 396, 417, 482
HhaI	GCGC	1 cut(s)	260
Hin1II	CATG	3 cut(s)	31, 286, 309
Hin6I	GCGC	1 cut(s)	258
HinP1I	GCGC	1 cut(s)	258
HinfI	GANTC	2 cut(s)	93, 676
HphI	GGTGA	2 cut(s)	301, 479
Hpy166II	GTNNAC	1 cut(s)	292
Hpy188I	TCNGA	2 cut(s)	54, 223
Hpy188III	TCNNGA	4 cut(s)	125, 188, 680, 715
Hpy8I	GTNNAC	1 cut(s)	292
HpyAV	CCTTC	4 cut(s)	58, 153, 160, 407
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4IV	ACGT	2 cut(s)	12, 120
HpyCH4V	TGCA	2 cut(s)	177, 626
HpyF10VI	GCNNNNNNNGC	2 cut(s)	264, 277
HpyF3I	CTNAG	5 cut(s)	126, 485, 534, 550, 654
HpySE526I	ACGT	2 cut(s)	12, 120
Hsp92II	CATG	3 cut(s)	31, 286, 309
HspAI	GCGC	1 cut(s)	258
Kzo9I	GATC	3 cut(s)	3, 620, 717
LmnI	GCTCC	1 cut(s)	378
LpnPI	CCDG	7 cut(s)	61, 138, 187, 221, 248, 378, 464
Lsp1109I	GCAGC	1 cut(s)	638
LweI	GCATC	2 cut(s)	523, 571
MaeI	CTAG	1 cut(s)	733
MaeII	ACGT	2 cut(s)	12, 120
MaeIII	GTNAC	3 cut(s)	170, 467, 523
MalI	GATC	3 cut(s)	5, 622, 719
MboI	GATC	3 cut(s)	3, 620, 717
MboII	GAAGA	2 cut(s)	80, 138
MflI	RGATCY	2 cut(s)	620, 717
MlsI	TGGCCA	1 cut(s)	417
MluCI	AATT	3 cut(s)	212, 366, 473
MluNI	TGGCCA	1 cut(s)	417
MlyI	GAGTC	2 cut(s)	87, 670
MnlI	CCTC	5 cut(s)	18, 145, 175, 202, 607
Mox20I	TGGCCA	1 cut(s)	417
MscI	TGGCCA	1 cut(s)	417
MseI	TTAA	3 cut(s)	48, 215, 459
MslI	CAYNNNNRTG	1 cut(s)	287
Msp20I	TGGCCA	1 cut(s)	417
MwoI	GCNNNNNNNGC	2 cut(s)	264, 277
NdeII	GATC	3 cut(s)	3, 620, 717
NlaIII	CATG	3 cut(s)	31, 286, 309
NmeAIII	GCCGAG	1 cut(s)	363
NmuCI	GTSAC	1 cut(s)	467
PflMI	CCANNNNNTGG	1 cut(s)	703
PkrI	GCNGC	3 cut(s)	628, 726, 729
PleI	GAGTC	2 cut(s)	87, 670
PpsI	GAGTC	2 cut(s)	87, 670
PshBI	ATTAAT	1 cut(s)	215
PsiI	TTATAA	1 cut(s)	663
PspEI	GGTNACC	1 cut(s)	467
PspPI	GGNCC	3 cut(s)	132, 481, 706
PstI	CTGCAG	1 cut(s)	628
PsuI	RGATCY	2 cut(s)	620, 717
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
RseI	CAYNNNNRTG	1 cut(s)	287
SaqAI	TTAA	3 cut(s)	48, 215, 459
SatI	GCNGC	3 cut(s)	627, 725, 728
Sau3AI	GATC	3 cut(s)	3, 620, 717
Sau96I	GGNCC	3 cut(s)	132, 481, 706
SchI	GAGTC	2 cut(s)	87, 670
SfaNI	GCATC	2 cut(s)	523, 571
SfcI	CTRYAG	1 cut(s)	624
SinI	GGWCC	1 cut(s)	706
SmiMI	CAYNNNNRTG	1 cut(s)	287
Sse9I	AATT	3 cut(s)	212, 366, 473
SsiI	CCGC	2 cut(s)	287, 302
SspMI	CTAG	1 cut(s)	733
StyI	CCWWGG	1 cut(s)	382
TaaI	ACNGT	1 cut(s)	163
TaiI	ACGT	2 cut(s)	15, 123
TaqI	TCGA	3 cut(s)	91, 187, 517
TasI	AATT	3 cut(s)	212, 366, 473
Tru1I	TTAA	3 cut(s)	48, 215, 459
Tru9I	TTAA	3 cut(s)	48, 215, 459
TscAI	CASTG	2 cut(s)	166, 267
TseFI	GTSAC	1 cut(s)	467
TseI	GCWGC	3 cut(s)	626, 724, 727
Tsp45I	GTSAC	1 cut(s)	467
TspDTI	ATGAA	2 cut(s)	59, 549
TspRI	CASTG	2 cut(s)	166, 267
Van91I	CCANNNNNTGG	1 cut(s)	703
VpaK11BI	GGWCC	1 cut(s)	706
VspI	ATTAAT	1 cut(s)	215
XspI	CTAG	1 cut(s)	733

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.