Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0014041

Physical Location & Seq

Genomic Coordinates Forward (+)

54029895 .. 54033225

Gene Structure 3331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG419800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGAAGAGGGACATTGTGAGCAGCTACTGTAAAGAAGTTCGAGAACTTGGGTACAGAATAGAGGAGTTAATATCAGAGAGCTTGGGCCTGGAGAAACATTACATTAAGAACATAATGGGTGAGCAAGGGCAACACATGGCTGTGAACTTTTACCCACCATGTCCTGAACCAGAGCTCACTTATGGGCTGCCGGGACACACTGACCCAAATGCACTAACCATTCTGCTCCAAGACCTCGGCGTTTGTGGGCTTCAAGTGCGCAAAGACGGCAAATGGGTTGCTGTCAATCCCCACCCTAATGCCTTCGTCATTAACATCGGTGACCAGTTACAGGCTCTAAGTAATGGGATTTACAAGAGTGTGTGGCACCGTGCCGTTACGAACACTGATAAGGCAAGGCTTTCGGTAGCCTCATTTCTGTGTCCACAGGACGATGCACTGATTAGCCCGGCAAAGACTCTTACAGAGGATGGATCTGCACCCATTTATCGGGGCTACACTTACACCGAGTATTACAAGAAGTTTTGGACTAGGAACTTGGACCAAGAGCATTGTTTGGAACTCTTCAAGAACCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002229 GO:0002239 GO:0003674 GO:0003824 GO:0004497 GO:0006082 GO:0006725 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009696 GO:0009719 GO:0009725 GO:0009751 GO:0009812 GO:0009813 GO:0009987 GO:0010033 GO:0010150 GO:0010817 GO:0014070 GO:0016054 GO:0016491 GO:0016705 GO:0016706 GO:0016709 GO:0016999 GO:0017001 GO:0017144 GO:0018958 GO:0019336 GO:0019439 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0033759 GO:0034785 GO:0042221 GO:0042440 GO:0042445 GO:0042447 GO:0042493 GO:0042537 GO:0042737 GO:0042742 GO:0043207 GO:0043436 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0046148 GO:0046244 GO:0046395 GO:0046677 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051213 GO:0051552 GO:0051553 GO:0051704 GO:0051707 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072329 GO:0090693 GO:0098542 GO:0099402 GO:1901360 GO:1901361 GO:1901575 GO:1901576 GO:1901615 GO:1901616 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

192

Amino Acids

21.82

Weight (kDa)

6.07

Isoelectric Point (pI)

42.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	44 - 142	1.5e-34	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014041)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24530
fragaria_vesca	FvH4_7g32980
malus_domestica	MD01G1228800.v1.1 MD07G1299900.v1.1
prunus_persica	Prupe.2G319600_v2.0.a1
pyrus_communis	pycom01g23680 pycom07g27220
rosa_chinensis	RchiOBHm_Chr1g0382951
rosa_laevigata	RLG00000026146
rosa_multiflora	Rmu_sc0018693.1_g000007
rosa_roxburghii	Rroxscaffold_4G00277750
rosa_rugosa	Rorug01G0437300
rosa_samantha	Rh1AG462800 Rh1BG419800 Rh1CG433600 Rh1DG451800
rosa_wichuraiana	Rw1G040920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	260
AccB1I	GGYRCC	1 cut(s)	366
AclWI	GGATC	1 cut(s)	481
AfaI	GTAC	1 cut(s)	53
AfiI	CCNNNNNNNGG	2 cut(s)	331, 489
AgsI	TTSAA	2 cut(s)	254, 568
AjnI	CCWGG	1 cut(s)	87
AluBI	AGCT	3 cut(s)	24, 81, 175
AluI	AGCT	3 cut(s)	24, 81, 175
Alw21I	GWGCWC	1 cut(s)	177
AlwI	GGATC	1 cut(s)	481
AlwNI	CAGNNNCTG	1 cut(s)	27
AoxI	GGCC	1 cut(s)	85
ApeKI	GCWGC	2 cut(s)	21, 187
AspLEI	GCGC	1 cut(s)	261
AspS9I	GGNCC	2 cut(s)	85, 541
AsuC2I	CCSGG	2 cut(s)	192, 449
AsuHPI	GGTGA	2 cut(s)	131, 332
AvaII	GGWCC	1 cut(s)	541
BanI	GGYRCC	1 cut(s)	366
BanII	GRGCYC	1 cut(s)	177
Bbv12I	GWGCWC	1 cut(s)	177
BbvI	GCAGC	2 cut(s)	33, 174
BccI	CCATC	1 cut(s)	464
BceAI	ACGGC	2 cut(s)	283, 359
BcgI	CGANNNNNNTGC	2 cut(s)	384, 418
BciT130I	CCWGG	1 cut(s)	89
BcnI	CCSGG	2 cut(s)	192, 449
BfaI	CTAG	1 cut(s)	531
BisI	GCNGC	2 cut(s)	22, 188
BlsI	GCNGC	2 cut(s)	23, 189
Bme1390I	CCNGG	3 cut(s)	89, 192, 449
Bme18I	GGWCC	1 cut(s)	541
BmgT120I	GGNCC	2 cut(s)	85, 541
BmiI	GGNNCC	1 cut(s)	368
BmrFI	CCNGG	3 cut(s)	89, 192, 449
BmsI	GCATC	1 cut(s)	424
BpmI	CTGGAG	1 cut(s)	110
BpuMI	CCSGG	2 cut(s)	192, 449
BsaJI	CCNNGG	1 cut(s)	235
Bsc4I	CCNNNNNNNGG	2 cut(s)	331, 489
Bse1I	ACTGG	2 cut(s)	325, 574
BseBI	CCWGG	1 cut(s)	89
BseDI	CCNNGG	1 cut(s)	235
BseGI	GGATG	1 cut(s)	475
BseLI	CCNNNNNNNGG	2 cut(s)	331, 489
BseNI	ACTGG	2 cut(s)	325, 574
BseRI	GAGGAG	1 cut(s)	77
BseXI	GCAGC	2 cut(s)	33, 174
BsgI	GTGCAG	1 cut(s)	462
BshFI	GGCC	1 cut(s)	87
BshNI	GGYRCC	1 cut(s)	366
BsiHKAI	GWGCWC	1 cut(s)	177
BsiSI	CCGG	2 cut(s)	191, 449
BslFI	GGGAC	2 cut(s)	23, 207
BslI	CCNNNNNNNGG	2 cut(s)	331, 489
BsmFI	GGGAC	2 cut(s)	23, 207
BsnI	GGCC	1 cut(s)	87
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp143I	GATC	1 cut(s)	473
BspANI	GGCC	1 cut(s)	87
BspLI	GGNNCC	1 cut(s)	368
BspPI	GGATC	1 cut(s)	481
BspT107I	GGYRCC	1 cut(s)	366
BsrI	ACTGG	2 cut(s)	325, 574
BssECI	CCNNGG	1 cut(s)	235
BssMI	GATC	1 cut(s)	473
Bst2UI	CCWGG	1 cut(s)	89
Bst4CI	ACNGT	2 cut(s)	29, 371
Bst6I	CTCTTC	1 cut(s)	569
BstDEI	CTNAG	1 cut(s)	338
BstEII	GGTNACC	1 cut(s)	320
BstF5I	GGATG	1 cut(s)	475
BstHHI	GCGC	1 cut(s)	261
BstKTI	GATC	1 cut(s)	476
BstMBI	GATC	1 cut(s)	473
BstMWI	GCNNNNNNNGC	2 cut(s)	256, 267
BstNI	CCWGG	1 cut(s)	89
BstPI	GGTNACC	1 cut(s)	320
BstSCI	CCNGG	3 cut(s)	87, 190, 447
BstV1I	GCAGC	2 cut(s)	33, 174
BstX2I	RGATCY	1 cut(s)	473
BstYI	RGATCY	1 cut(s)	473
BsuRI	GGCC	1 cut(s)	87
BtsCI	GGATG	1 cut(s)	475
BtsIMutI	CAGTG	3 cut(s)	198, 384, 437
CaiI	CAGNNNCTG	1 cut(s)	27
CfoI	GCGC	1 cut(s)	261
Cfr13I	GGNCC	2 cut(s)	85, 541
Csp6I	GTAC	1 cut(s)	52
CviAII	CATG	2 cut(s)	136, 159
CviQI	GTAC	1 cut(s)	52
DdeI	CTNAG	1 cut(s)	338
DpnI	GATC	1 cut(s)	475
DpnII	GATC	1 cut(s)	473
Eam1104I	CTCTTC	1 cut(s)	569
EarI	CTCTTC	1 cut(s)	569
Ecl136II	GAGCTC	1 cut(s)	175
Eco24I	GRGCYC	1 cut(s)	177
Eco47I	GGWCC	1 cut(s)	541
Eco53kI	GAGCTC	1 cut(s)	175
Eco91I	GGTNACC	1 cut(s)	320
EcoICRI	GAGCTC	1 cut(s)	175
EcoO65I	GGTNACC	1 cut(s)	320
EcoRII	CCWGG	1 cut(s)	87
EcoT38I	GRGCYC	1 cut(s)	177
FaeI	CATG	2 cut(s)	139, 162
FaiI	YATR	4 cut(s)	113, 137, 160, 183
FaqI	GGGAC	2 cut(s)	23, 207
FatI	CATG	2 cut(s)	135, 158
Fnu4HI	GCNGC	2 cut(s)	22, 188
FokI	GGATG	1 cut(s)	482
FriOI	GRGCYC	1 cut(s)	177
Fsp4HI	GCNGC	2 cut(s)	22, 188
FspBI	CTAG	1 cut(s)	531
FspI	TGCGCA	1 cut(s)	260
GlaI	GCGC	1 cut(s)	260
GluI	GCNGC	2 cut(s)	22, 188
GsuI	CTGGAG	1 cut(s)	110
HaeIII	GGCC	1 cut(s)	87
HapII	CCGG	2 cut(s)	191, 449
HhaI	GCGC	1 cut(s)	261
Hin1II	CATG	2 cut(s)	139, 162
Hin6I	GCGC	1 cut(s)	259
HinP1I	GCGC	1 cut(s)	259
HinfI	GANTC	1 cut(s)	457
HpaII	CCGG	2 cut(s)	191, 449
HphI	GGTGA	2 cut(s)	131, 332
Hpy166II	GTNNAC	2 cut(s)	145, 425
Hpy188I	TCNGA	1 cut(s)	76
Hpy188III	TCNNGA	3 cut(s)	41, 164, 568
Hpy8I	GTNNAC	2 cut(s)	145, 425
HpyAV	CCTTC	1 cut(s)	313
HpyCH4III	ACNGT	2 cut(s)	29, 371
HpyCH4V	TGCA	3 cut(s)	212, 437, 479
HpyF10VI	GCNNNNNNNGC	2 cut(s)	256, 267
HpyF3I	CTNAG	1 cut(s)	338
Hsp92II	CATG	2 cut(s)	139, 162
HspAI	GCGC	1 cut(s)	259
Kzo9I	GATC	1 cut(s)	473
LmnI	GCTCC	1 cut(s)	231
LpnPI	CCDG	9 cut(s)	74, 101, 177, 183, 204, 317, 338, 413, 462
Lsp1109I	GCAGC	2 cut(s)	33, 174
LweI	GCATC	1 cut(s)	424
MaeI	CTAG	1 cut(s)	531
MaeIII	GTNAC	3 cut(s)	320, 327, 376
MalI	GATC	1 cut(s)	475
MboI	GATC	1 cut(s)	473
MboII	GAAGA	2 cut(s)	16, 556
MflI	RGATCY	1 cut(s)	473
MhlI	GDGCHC	1 cut(s)	177
MlyI	GAGTC	1 cut(s)	451
MnlI	CCTC	4 cut(s)	55, 245, 421, 460
MseI	TTAA	3 cut(s)	68, 105, 312
MslI	CAYNNNNRTG	3 cut(s)	140, 297, 418
MspI	CCGG	2 cut(s)	191, 449
MspR9I	CCNGG	3 cut(s)	89, 192, 449
MvaI	CCWGG	1 cut(s)	89
MwoI	GCNNNNNNNGC	2 cut(s)	256, 267
NciI	CCSGG	2 cut(s)	192, 449
NdeII	GATC	1 cut(s)	473
NlaIII	CATG	2 cut(s)	139, 162
NlaIV	GGNNCC	1 cut(s)	368
NmeAIII	GCCGAG	1 cut(s)	216
NmuCI	GTSAC	1 cut(s)	320
NsbI	TGCGCA	1 cut(s)	260
PkrI	GCNGC	2 cut(s)	23, 189
PleI	GAGTC	1 cut(s)	451
PpsI	GAGTC	1 cut(s)	451
Psp124BI	GAGCTC	1 cut(s)	177
Psp6I	CCWGG	1 cut(s)	87
PspEI	GGTNACC	1 cut(s)	320
PspGI	CCWGG	1 cut(s)	87
PspN4I	GGNNCC	1 cut(s)	368
PspPI	GGNCC	2 cut(s)	85, 541
PstNI	CAGNNNCTG	1 cut(s)	27
PsuI	RGATCY	1 cut(s)	473
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
RseI	CAYNNNNRTG	3 cut(s)	140, 297, 418
SacI	GAGCTC	1 cut(s)	177
SaqAI	TTAA	3 cut(s)	68, 105, 312
SatI	GCNGC	2 cut(s)	22, 188
Sau3AI	GATC	1 cut(s)	473
Sau96I	GGNCC	2 cut(s)	85, 541
SchI	GAGTC	1 cut(s)	451
ScrFI	CCNGG	3 cut(s)	89, 192, 449
SduI	GDGCHC	1 cut(s)	177
SetI	ASST	4 cut(s)	26, 83, 177, 237
SfaNI	GCATC	1 cut(s)	424
SinI	GGWCC	1 cut(s)	541
SmiMI	CAYNNNNRTG	3 cut(s)	140, 297, 418
SspMI	CTAG	1 cut(s)	531
SstI	GAGCTC	1 cut(s)	177
StyD4I	CCNGG	3 cut(s)	87, 190, 447
TaaI	ACNGT	2 cut(s)	29, 371
TaqI	TCGA	1 cut(s)	40
Tru1I	TTAA	3 cut(s)	68, 105, 312
Tru9I	TTAA	3 cut(s)	68, 105, 312
TscAI	CASTG	3 cut(s)	205, 391, 444
TseFI	GTSAC	1 cut(s)	320
TseI	GCWGC	2 cut(s)	21, 187
Tsp45I	GTSAC	1 cut(s)	320
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	3 cut(s)	205, 391, 444
VpaK11BI	GGWCC	1 cut(s)	541
XspI	CTAG	1 cut(s)	531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.