AT5G24620

Thaumatin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0010371
Physical Location & Seq
Forward (+)
8430004 .. 8432414
2411 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G24620.2

Sequence Viewer

Length: 1263 bp
ATGGGAAGATCACCAATGGTTCCTATGGCTGTTCTTGTTTATGTTTCTCTACTGTTCTCTGTTTCTTATTCCTCCACGTTCGTCATCACAAATAACTGTCCCTTTACTATATGGCCTGGAACTCTTGCAGGCTCTGGCACCCAGCCACTACCCACCACAGGGTTCAGGCTTGATGTGGGACAGTCTGTTAGAATTCCCACGGCTCTAGGCTGGTCAGGTCGTATTTGGGCTAGGACTGGCTGCAACTTTGATGCTAACGGCGCGGGAAAATGTATGACTGGAGACTGCGGCGGAAAGCTGGAGTGTGCTGGTAATGGCGCTGCTCCGCCGACATCTCTTTTCGAGATCACACTCGGTCACGGTTCTGATGACAAAGATTTCTATGATGTCAGTCTCGTTGATGGGTATAACCTTCCCATAGTTGCTCTCCCGACGGGTGGTGGACTGGTTGGCGCTTGTAATGCTACAGGATGTGTTGCTGATATCAATATTAGCTGTCCAAAGGAGCTTCAAGTGATGGGAGAGGAAGAGGCTGAAAGAGGAGGGGTTGTTGCATGCAAGAGCGCTTGTGAGGCCTTTGGGTTGGACCAGTACTGTTGCAGCGGTCAGTTTGCTAACCCGACCACATGCCGACCGTCTTTATACTCTTCCATCTTCAAGAGAGCTTGTCCCAGAGCTTATAGCTATGCCTTCGATGATGGAACCAGTACTTTCACCTGCAAGGCTTCTGAATATGCAATTATCTTCTGCCCTGGCAGGGTAAAAAGACCAGACAGTCTGAACTCGGATCCTCCCAGCCCACCTCAGAATCAGTTAGGGCAACCTATGGCTCCCCCAACTCAAAATCAGTATGGTCAACCTATGGCTCCTGCACCTCAGTATCAGTACGGTCAACCTATGGCTCCACCGACTCAAAATCAGTATGGTCAACCTCTGGCTCCTCCGACTCAAAATCAATACGATCAACCTCTGGCTCCTCCGACTCAAAATCAATATGGTCAACCTATGGCTCCACCAACTCCGCCCCCACCCGGACCAAACGAGGATTCAATGACTCCCCCACCTCAGAATCAGAATGGGGATGGGCAGTTCATGCCTCCTCCCACTTTGGACCAAGATCCAAACGACCAGTATATGAATCCCCCAATTCAGGATCAGAGTCAAAGAGAGACTCAATCTTCATCCGATCTTCTTCGACCTTACCCTGTCTTGTTGCTTCTTGGCTTTAGTCTAACTGCTTTGAGGCAATCTGGCACGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

420

Amino Acids

44.75

Weight (kDa)

4.56

Isoelectric Point (pI)

53.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 15 - 134 1.1e-39 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010371)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24620 AT5G24620 AT5G24620 AT5G24620
fragaria_vesca FvH4_7g33310
malus_domestica MD01G1231300.v1.1 MD07G1303300.v1.1
prunus_persica Prupe.2G322000_v2.0.a1
pyrus_communis pycom01g23930 pycom07g27620
rosa_chinensis RchiOBHm_Chr1g0383291
rosa_laevigata RLG00000026116
rosa_multiflora Rmu_sc0007173.1_g000020 Rmu_sc0014196.1_g000004
rosa_roxburghii Rroxscaffold_4G00277430
rosa_rugosa Rorug01G0440400
rosa_samantha Rh1AG465900 Rh1BG423300 Rh1CG436500 Rh1DG456000
rosa_wichuraiana Rw1G040650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 725
AasI GACNNNNNNGTC 1 cut(s) 774
Acc36I ACCTGC 1 cut(s) 725
AccB1I GGYRCC 1 cut(s) 137
AccII CGCG 1 cut(s) 263
AciI CCGC 6 cut(s) 263, 288, 291, 326, 603, 1022
AclWI GGATC 4 cut(s) 782, 795, 1112, 1161
AcsI RAATTY 1 cut(s) 192
AfaI GTAC 3 cut(s) 593, 709, 887
AfeI AGCGCT 1 cut(s) 565
AfiI CCNNNNNNNGG 6 cut(s) 158, 159, 437, 757, 1031, 1150
AgsI TTSAA 3 cut(s) 512, 658, 1050
AjnI CCWGG 2 cut(s) 115, 751
AjuI GAANNNNNNNTTGG 2 cut(s) 1030, 1062
AloI GAACNNNNNNTCC 2 cut(s) 1073, 1105
AluBI AGCT 6 cut(s) 298, 495, 508, 665, 677, 684
AluI AGCT 6 cut(s) 298, 495, 508, 665, 677, 684
Alw26I GTCTC 3 cut(s) 276, 398, 1163
AlwI GGATC 4 cut(s) 782, 795, 1112, 1161
AlwNI CAGNNNCTG 1 cut(s) 134
Aor51HI AGCGCT 1 cut(s) 565
AoxI GGCC 2 cut(s) 113, 573
ApeKI GCWGC 3 cut(s) 240, 320, 600
ApoI RAATTY 1 cut(s) 192
AspLEI GCGC 4 cut(s) 263, 320, 455, 566
AspS9I GGNCC 3 cut(s) 586, 1034, 1111
AsuC2I CCSGG 1 cut(s) 1032
AsuHPI GGTGA 2 cut(s) 3, 706
AvaII GGWCC 3 cut(s) 586, 1034, 1111
BaeI ACNNNNGTAYC 2 cut(s) 863, 896
BamHI GGATCC 1 cut(s) 787
BanI GGYRCC 1 cut(s) 137
BbvI GCAGC 3 cut(s) 227, 307, 612
BccI CCATC 5 cut(s) 395, 511, 659, 692, 1076
BceAI ACGGC 2 cut(s) 216, 274
BciT130I CCWGG 2 cut(s) 117, 753
BcnI CCSGG 1 cut(s) 1032
BcoDI GTCTC 3 cut(s) 276, 398, 1163
BfaI CTAG 2 cut(s) 206, 231
BfmI CTRYAG 1 cut(s) 465
BfoI RGCGCY 3 cut(s) 321, 456, 567
BfuAI ACCTGC 1 cut(s) 725
BisI GCNGC 4 cut(s) 241, 289, 321, 601
BlsI GCNGC 4 cut(s) 242, 290, 322, 602
BmcAI AGTACT 2 cut(s) 593, 709
Bme1390I CCNGG 3 cut(s) 117, 753, 1032
Bme18I GGWCC 3 cut(s) 586, 1034, 1111
BmgT120I GGNCC 3 cut(s) 586, 1034, 1111
BmrFI CCNGG 3 cut(s) 117, 753, 1032
BmsI GCATC 1 cut(s) 241
BpmI CTGGAG 2 cut(s) 300, 320
BpuMI CCSGG 1 cut(s) 1032
BsaJI CCNNGG 2 cut(s) 198, 751
BsaXI ACNNNNNCTCC 2 cut(s) 534, 564
Bsc4I CCNNNNNNNGG 6 cut(s) 158, 159, 437, 757, 1031, 1150
Bse1I ACTGG 6 cut(s) 241, 283, 450, 589, 705, 1129
BseBI CCWGG 2 cut(s) 117, 753
BseDI CCNNGG 2 cut(s) 198, 751
BseGI GGATG 3 cut(s) 476, 1087, 1181
BseLI CCNNNNNNNGG 6 cut(s) 158, 159, 437, 757, 1031, 1150
BseMII CTCAG 3 cut(s) 818, 890, 1079
BseNI ACTGG 6 cut(s) 241, 283, 450, 589, 705, 1129
BseRI GAGGAG 4 cut(s) 555, 930, 966, 1089
BseXI GCAGC 3 cut(s) 227, 307, 612
BseYI CCCAGC 2 cut(s) 141, 794
BsgI GTGCAG 1 cut(s) 855
Bsh1236I CGCG 1 cut(s) 263
Bsh1285I CGRYCG 1 cut(s) 635
BshFI GGCC 2 cut(s) 115, 575
BshNI GGYRCC 1 cut(s) 137
BsiEI CGRYCG 1 cut(s) 635
BsiSI CCGG 1 cut(s) 1032
BslFI GGGAC 3 cut(s) 84, 192, 654
BslI CCNNNNNNNGG 6 cut(s) 158, 159, 437, 757, 1031, 1150
BsmAI GTCTC 3 cut(s) 276, 398, 1163
BsmFI GGGAC 3 cut(s) 84, 192, 654
BsnI GGCC 2 cut(s) 115, 575
Bsp143I GATC 7 cut(s) 8, 345, 787, 961, 1117, 1153, 1186
BspACI CCGC 6 cut(s) 263, 288, 291, 326, 603, 1022
BspANI GGCC 2 cut(s) 115, 575
BspCNI CTCAG 3 cut(s) 817, 889, 1078
BspFNI CGCG 1 cut(s) 263
BspMI ACCTGC 1 cut(s) 725
BspPI GGATC 4 cut(s) 782, 795, 1112, 1161
BspT107I GGYRCC 1 cut(s) 137
BsrI ACTGG 6 cut(s) 241, 283, 450, 589, 705, 1129
BssECI CCNNGG 2 cut(s) 198, 751
BssMI GATC 7 cut(s) 8, 345, 787, 961, 1117, 1153, 1186
Bst2UI CCWGG 2 cut(s) 117, 753
Bst4CI ACNGT 8 cut(s) 54, 98, 183, 362, 596, 636, 776, 890
Bst6I CTCTTC 2 cut(s) 522, 652
BstAPI GCANNNNNTGC 1 cut(s) 1093
BstC8I GCNNGC 2 cut(s) 130, 556
BstDEI CTNAG 3 cut(s) 804, 876, 1065
BstDSI CCRYGG 1 cut(s) 198
BstF5I GGATG 3 cut(s) 476, 1087, 1181
BstFNI CGCG 1 cut(s) 263
BstH2I RGCGCY 3 cut(s) 321, 456, 567
BstHHI GCGC 4 cut(s) 263, 320, 455, 566
BstKTI GATC 7 cut(s) 11, 348, 790, 964, 1120, 1156, 1189
BstMAI GTCTC 3 cut(s) 276, 398, 1163
BstMBI GATC 7 cut(s) 8, 345, 787, 961, 1117, 1153, 1186
BstMCI CGRYCG 1 cut(s) 635
BstMWI GCNNNNNNNGC 4 cut(s) 260, 461, 572, 1093
BstNI CCWGG 2 cut(s) 117, 753
BstNSI RCATGY 2 cut(s) 558, 630
BstSCI CCNGG 3 cut(s) 115, 751, 1030
BstSFI CTRYAG 1 cut(s) 465
BstUI CGCG 1 cut(s) 263
BstV1I GCAGC 3 cut(s) 227, 307, 612
BstX2I RGATCY 2 cut(s) 787, 1117
BstYI RGATCY 2 cut(s) 787, 1117
BsuRI GGCC 2 cut(s) 115, 575
BtgI CCRYGG 1 cut(s) 198
BtsCI GGATG 3 cut(s) 476, 1087, 1181
BveI ACCTGC 1 cut(s) 725
Cac8I GCNNGC 2 cut(s) 130, 556
CaiI CAGNNNCTG 1 cut(s) 134
CfoI GCGC 4 cut(s) 263, 320, 455, 566
Cfr13I GGNCC 3 cut(s) 586, 1034, 1111
Csp6I GTAC 3 cut(s) 592, 708, 886
CviAII CATG 4 cut(s) 555, 627, 1093, 1260
CviQI GTAC 3 cut(s) 592, 708, 886
DdeI CTNAG 3 cut(s) 804, 876, 1065
DpnI GATC 7 cut(s) 10, 347, 789, 963, 1119, 1155, 1188
DpnII GATC 7 cut(s) 8, 345, 787, 961, 1117, 1153, 1186
DrdI GACNNNNNNGTC 1 cut(s) 774
DseDI GACNNNNNNGTC 1 cut(s) 774
Eam1104I CTCTTC 2 cut(s) 522, 652
EarI CTCTTC 2 cut(s) 522, 652
EciI GGCGGA 3 cut(s) 306, 315, 1011
Eco147I AGGCCT 1 cut(s) 575
Eco32I GATATC 1 cut(s) 484
Eco47I GGWCC 3 cut(s) 586, 1034, 1111
Eco47III AGCGCT 1 cut(s) 565
EcoRI GAATTC 1 cut(s) 192
EcoRII CCWGG 2 cut(s) 115, 751
EcoRV GATATC 1 cut(s) 484
FaeI CATG 4 cut(s) 558, 630, 1096, 1263
FaqI GGGAC 3 cut(s) 84, 192, 654
FatI CATG 4 cut(s) 554, 626, 1092, 1259
FauI CCCGC 1 cut(s) 256
Fnu4HI GCNGC 4 cut(s) 241, 289, 321, 601
FokI GGATG 3 cut(s) 483, 1094, 1168
Fsp4HI GCNGC 4 cut(s) 241, 289, 321, 601
FspBI CTAG 2 cut(s) 206, 231
GlaI GCGC 4 cut(s) 262, 319, 454, 565
GluI GCNGC 4 cut(s) 241, 289, 321, 601
GsaI CCCAGC 2 cut(s) 145, 798
GsuI CTGGAG 2 cut(s) 300, 320
HaeII RGCGCY 3 cut(s) 321, 456, 567
HaeIII GGCC 2 cut(s) 115, 575
HapII CCGG 1 cut(s) 1032
HhaI GCGC 4 cut(s) 263, 320, 455, 566
Hin1II CATG 4 cut(s) 558, 630, 1096, 1263
Hin6I GCGC 4 cut(s) 261, 318, 453, 564
HinP1I GCGC 4 cut(s) 261, 318, 453, 564
HincII GTYRAC 4 cut(s) 857, 893, 929, 1001
HindII GTYRAC 4 cut(s) 857, 893, 929, 1001
HpaII CCGG 1 cut(s) 1032
HphI GGTGA 2 cut(s) 3, 706
Hpy166II GTNNAC 5 cut(s) 443, 857, 893, 929, 1001
Hpy188III TCNNGA 4 cut(s) 343, 430, 658, 1151
Hpy8I GTNNAC 5 cut(s) 443, 857, 893, 929, 1001
Hpy99I CGWCG 1 cut(s) 436
HpyAV CCTTC 2 cut(s) 422, 700
HpyCH4III ACNGT 8 cut(s) 54, 98, 183, 362, 596, 636, 776, 890
HpyCH4IV ACGT 1 cut(s) 77
HpyCH4V TGCA 8 cut(s) 128, 243, 554, 558, 600, 720, 737, 872
HpyF10VI GCNNNNNNNGC 4 cut(s) 260, 461, 572, 1093
HpyF3I CTNAG 3 cut(s) 804, 876, 1065
HpySE526I ACGT 1 cut(s) 77
Hsp92II CATG 4 cut(s) 558, 630, 1096, 1263
HspAI GCGC 4 cut(s) 261, 318, 453, 564
Kzo9I GATC 7 cut(s) 8, 345, 787, 961, 1117, 1153, 1186
LmnI GCTCC 8 cut(s) 328, 505, 835, 871, 907, 943, 979, 1015
Lsp1109I GCAGC 3 cut(s) 227, 307, 612
LweI GCATC 1 cut(s) 241
MaeI CTAG 2 cut(s) 206, 231
MaeII ACGT 1 cut(s) 77
MaeIII GTNAC 1 cut(s) 356
MalI GATC 7 cut(s) 10, 347, 789, 963, 1119, 1155, 1188
MboI GATC 7 cut(s) 8, 345, 787, 961, 1117, 1153, 1186
MboII GAAGA 8 cut(s) 18, 539, 639, 646, 736, 1170, 1181, 1184
MflI RGATCY 2 cut(s) 787, 1117
MluCI AATT 3 cut(s) 192, 738, 1146
MlyI GAGTC 6 cut(s) 904, 940, 976, 1048, 1165, 1168
MmeI TCCRAC 3 cut(s) 564, 968, 1004
MspA1I CMGCKG 1 cut(s) 603
MspI CCGG 1 cut(s) 1032
MspR9I CCNGG 3 cut(s) 117, 753, 1032
MvaI CCWGG 2 cut(s) 117, 753
MvnI CGCG 1 cut(s) 263
MwoI GCNNNNNNNGC 4 cut(s) 260, 461, 572, 1093
NciI CCSGG 1 cut(s) 1032
NdeII GATC 7 cut(s) 8, 345, 787, 961, 1117, 1153, 1186
NlaIII CATG 4 cut(s) 558, 630, 1096, 1263
NmuCI GTSAC 1 cut(s) 356
NspI RCATGY 2 cut(s) 558, 630
PaeI GCATGC 1 cut(s) 558
PaqCI CACCTGC 1 cut(s) 725
PceI AGGCCT 1 cut(s) 575
PfeI GAWTC 4 cut(s) 808, 1046, 1069, 1138
PkrI GCNGC 4 cut(s) 242, 290, 322, 602
PleI GAGTC 6 cut(s) 904, 940, 976, 1048, 1165, 1167
PpsI GAGTC 6 cut(s) 904, 940, 976, 1048, 1165, 1167
Psp6I CCWGG 2 cut(s) 115, 751
PspFI CCCAGC 2 cut(s) 141, 794
PspGI CCWGG 2 cut(s) 115, 751
PspPI GGNCC 3 cut(s) 586, 1034, 1111
PstNI CAGNNNCTG 1 cut(s) 134
PsuI RGATCY 2 cut(s) 787, 1117
RsaI GTAC 3 cut(s) 593, 709, 887
RsaNI GTAC 3 cut(s) 592, 708, 886
SatI GCNGC 4 cut(s) 241, 289, 321, 601
Sau3AI GATC 7 cut(s) 8, 345, 787, 961, 1117, 1153, 1186
Sau96I GGNCC 3 cut(s) 586, 1034, 1111
ScaI AGTACT 2 cut(s) 593, 709
SchI GAGTC 6 cut(s) 904, 940, 976, 1048, 1165, 1168
ScrFI CCNGG 3 cut(s) 117, 753, 1032
SfaNI GCATC 1 cut(s) 241
SfcI CTRYAG 1 cut(s) 465
SinI GGWCC 3 cut(s) 586, 1034, 1111
SphI GCATGC 1 cut(s) 558
Sse9I AATT 3 cut(s) 192, 738, 1146
SseBI AGGCCT 1 cut(s) 575
SsiI CCGC 6 cut(s) 263, 288, 291, 326, 603, 1022
SspI AATATT 1 cut(s) 490
SspMI CTAG 2 cut(s) 206, 231
StuI AGGCCT 1 cut(s) 575
StyD4I CCNGG 3 cut(s) 115, 751, 1030
TaaI ACNGT 8 cut(s) 54, 98, 183, 362, 596, 636, 776, 890
TaiI ACGT 1 cut(s) 80
TaqI TCGA 3 cut(s) 342, 693, 1195
TaqII GACCGA 1 cut(s) 344
TasI AATT 3 cut(s) 192, 738, 1146
TatI WGTACW 2 cut(s) 591, 707
TauI GCSGC 1 cut(s) 291
TfiI GAWTC 4 cut(s) 808, 1046, 1069, 1138
TseFI GTSAC 1 cut(s) 356
TseI GCWGC 3 cut(s) 240, 320, 600
Tsp45I GTSAC 1 cut(s) 356
TspDTI ATGAA 3 cut(s) 1081, 1151, 1170
VpaK11BI GGWCC 3 cut(s) 586, 1034, 1111
XapI RAATTY 1 cut(s) 192
XceI RCATGY 2 cut(s) 558, 630
XspI CTAG 2 cut(s) 206, 231
ZrmI AGTACT 2 cut(s) 593, 709
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.