Rh1BG423300

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0010371
Physical Location & Seq
Forward (+)
54258872 .. 54260521
1650 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG423300.1

Sequence Viewer

Length: 891 bp
ATGTCATCTCAAACTTTCCCGTGTTTCGTTTTCCTCCTCTTTTCCATTTCCTTCTATTCAGCTTACTCCTCCATATTCTCCATCACAAACAACTGTCCATATACCATCTGGCCTGGCACATTATCCGGTTCTGGCACGCCTCCGCTTCCGACGACCGGGTTTCAGCTGTACTCGGGACAGAGTGCGAGAATTGATTCTGTTCCGGGATGGTCAGGGCGTATATGGGCTAGAACTGGGTGCACATTCAATGAGTTGGGAGTCGGAACATGTCAAACAGGTGACTGTGGAGGAAGGCTAGAATGTGATGGCAATGGTGCCACCCCACCTGCTTCACTCTTTGAAATAACCCTTGGCAAGGGCAATGACAAAGATTTCTACGATGTCAGCATTGTTGATGGATACAATCTGCCTCTTGTTGCCACCCCTCGCGGCGTCTATGGTGCGTGTAACGCCACCGGATGTGTCTCGGATATCAACAAAGGTTGTCCGAAAGAGCTTCAGGTGGTGGGAGGCGAAAATGAAGGGAATGTGATTGGATGCAAGAGTGCCTGCGACACATTCGGTTTGGATCAGTATTGCTGCAGTGGACAGTTTGCTAACCCAACAACATGCCGGCCCTCCTCTTATTCAACCGTTTTCAAGCGAGCTTGTCCCAGAGCTTACAGCTATGCTTTTGATGATGGCACAAGCACTTTTACATGCAAGGCTTTTGAATATGCCATTGTTTTCTGCCCCAACAACAAAGGGACGAGTGAATCGAATAGCACATTGGCACCTCCAAGATTTGAAGTGCCTGGTGCTGGGAAGGTTGTGCGGGTGGCTTCCTCCTCGGACATGCTTTTACCAATTCCGTCTCTAATCTTTCTTCTCATCCTGAACATTCTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

296

Amino Acids

31.51

Weight (kDa)

5.05

Isoelectric Point (pI)

39.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 30 - 245 3e-82 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010371)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24620 AT5G24620 AT5G24620 AT5G24620
fragaria_vesca FvH4_7g33310
malus_domestica MD01G1231300.v1.1 MD07G1303300.v1.1
prunus_persica Prupe.2G322000_v2.0.a1
pyrus_communis pycom01g23930 pycom07g27620
rosa_chinensis RchiOBHm_Chr1g0383291
rosa_laevigata RLG00000026116
rosa_multiflora Rmu_sc0007173.1_g000020 Rmu_sc0014196.1_g000004
rosa_roxburghii Rroxscaffold_4G00277430
rosa_rugosa Rorug01G0440400
rosa_samantha Rh1AG465900 Rh1BG423300 Rh1CG436500 Rh1DG456000
rosa_wichuraiana Rw1G040650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 334
Acc36I ACCTGC 1 cut(s) 334
AccB1I GGYRCC 2 cut(s) 314, 772
AccII CGCG 1 cut(s) 429
AciI CCGC 3 cut(s) 143, 429, 814
AclWI GGATC 1 cut(s) 576
AcuI CTGAAG 1 cut(s) 482
AcyI GRCGYC 1 cut(s) 432
AfaI GTAC 1 cut(s) 170
AfiI CCNNNNNNNGG 3 cut(s) 155, 355, 800
AflIII ACRYGT 1 cut(s) 266
AgsI TTSAA 6 cut(s) 247, 341, 630, 640, 713, 788
AjnI CCWGG 2 cut(s) 112, 793
AjuI GAANNNNNNNTTGG 4 cut(s) 333, 365, 752, 784
AluBI AGCT 6 cut(s) 62, 166, 496, 647, 659, 666
AluI AGCT 6 cut(s) 62, 166, 496, 647, 659, 666
Alw21I GWGCWC 1 cut(s) 242
Alw26I GTCTC 2 cut(s) 469, 858
Alw44I GTGCAC 1 cut(s) 238
AlwI GGATC 1 cut(s) 576
Ama87I CYCGRG 1 cut(s) 172
AoxI GGCC 2 cut(s) 110, 614
ApaLI GTGCAC 1 cut(s) 238
ApeKI GCWGC 1 cut(s) 579
Asp700I GAANNNNTTC 1 cut(s) 193
AspS9I GGNCC 1 cut(s) 615
AsuC2I CCSGG 2 cut(s) 157, 204
AsuHPI GGTGA 1 cut(s) 290
AvaI CYCGRG 1 cut(s) 172
BaeGI GKGCMC 1 cut(s) 242
BanI GGYRCC 2 cut(s) 314, 772
Bbv12I GWGCWC 1 cut(s) 242
BbvI GCAGC 1 cut(s) 566
BccI CCATC 6 cut(s) 89, 113, 201, 299, 389, 674
BciT130I CCWGG 2 cut(s) 114, 795
BciVI GTATCC 1 cut(s) 392
BcnI CCSGG 2 cut(s) 157, 204
BcoDI GTCTC 2 cut(s) 469, 858
BfaI CTAG 2 cut(s) 228, 296
BfmI CTRYAG 1 cut(s) 580
BfuAI ACCTGC 1 cut(s) 334
BfuI GTATCC 1 cut(s) 392
BisI GCNGC 2 cut(s) 430, 580
BlsI GCNGC 2 cut(s) 431, 581
Bme1390I CCNGG 4 cut(s) 114, 157, 204, 795
BmeT110I CYCGRG 1 cut(s) 172
BmgT120I GGNCC 1 cut(s) 615
BmiI GGNNCC 2 cut(s) 316, 774
BmrFI CCNGG 4 cut(s) 114, 157, 204, 795
BmrI ACTGGG 1 cut(s) 243
BmsI GCATC 1 cut(s) 527
BmuI ACTGGG 1 cut(s) 243
BpuMI CCSGG 2 cut(s) 157, 204
BsaHI GRCGYC 1 cut(s) 432
BsaJI CCNNGG 2 cut(s) 349, 828
BsaWI WCCGGW 2 cut(s) 125, 455
Bsc4I CCNNNNNNNGG 3 cut(s) 155, 355, 800
Bse118I RCCGGY 1 cut(s) 612
Bse1I ACTGG 1 cut(s) 238
Bse3DI GCAATG 2 cut(s) 316, 367
BseBI CCWGG 2 cut(s) 114, 795
BseDI CCNNGG 2 cut(s) 349, 828
BseGI GGATG 4 cut(s) 212, 464, 542, 870
BseLI CCNNNNNNNGG 3 cut(s) 155, 355, 800
BseMI GCAATG 2 cut(s) 316, 367
BseNI ACTGG 1 cut(s) 238
BseRI GAGGAG 4 cut(s) 26, 58, 610, 817
BseSI GKGCMC 1 cut(s) 242
BseXI GCAGC 1 cut(s) 566
BseYI CCCAGC 1 cut(s) 800
Bsh1236I CGCG 1 cut(s) 429
Bsh1285I CGRYCG 1 cut(s) 156
BshFI GGCC 2 cut(s) 112, 616
BshNI GGYRCC 2 cut(s) 314, 772
BsiEI CGRYCG 1 cut(s) 156
BsiHKAI GWGCWC 1 cut(s) 242
BsiHKCI CYCGRG 1 cut(s) 172
BsiSI CCGG 5 cut(s) 126, 156, 203, 456, 613
BslFI GGGAC 3 cut(s) 189, 636, 760
BslI CCNNNNNNNGG 3 cut(s) 155, 355, 800
BsmAI GTCTC 2 cut(s) 469, 858
BsmBI CGTCTC 1 cut(s) 858
BsmFI GGGAC 3 cut(s) 189, 636, 760
BsnI GGCC 2 cut(s) 112, 616
BsoBI CYCGRG 1 cut(s) 172
Bsp1286I GDGCHC 1 cut(s) 242
Bsp143I GATC 1 cut(s) 568
BspACI CCGC 3 cut(s) 143, 429, 814
BspANI GGCC 2 cut(s) 112, 616
BspFNI CGCG 1 cut(s) 429
BspLI GGNNCC 2 cut(s) 316, 774
BspMAI CTGCAG 1 cut(s) 584
BspMI ACCTGC 1 cut(s) 334
BspPI GGATC 1 cut(s) 576
BspT107I GGYRCC 2 cut(s) 314, 772
BsrDI GCAATG 2 cut(s) 316, 367
BsrFI RCCGGY 1 cut(s) 612
BsrI ACTGG 1 cut(s) 238
BssAI RCCGGY 1 cut(s) 612
BssECI CCNNGG 2 cut(s) 349, 828
BssMI GATC 1 cut(s) 568
BssNI GRCGYC 1 cut(s) 432
BssT1I CCWWGG 1 cut(s) 349
Bst2UI CCWGG 2 cut(s) 114, 795
Bst4CI ACNGT 4 cut(s) 95, 284, 591, 634
BstACI GRCGYC 1 cut(s) 432
BstC8I GCNNGC 4 cut(s) 137, 550, 614, 645
BstENI CCTNNNNNAGG 1 cut(s) 353
BstF5I GGATG 4 cut(s) 212, 464, 542, 870
BstFNI CGCG 1 cut(s) 429
BstKTI GATC 1 cut(s) 571
BstMAI GTCTC 2 cut(s) 469, 858
BstMBI GATC 1 cut(s) 568
BstMCI CGRYCG 1 cut(s) 156
BstMWI GCNNNNNNNGC 1 cut(s) 449
BstNI CCWGG 2 cut(s) 114, 795
BstNSI RCATGY 4 cut(s) 270, 612, 702, 838
BstSCI CCNGG 4 cut(s) 112, 155, 202, 793
BstSFI CTRYAG 1 cut(s) 580
BstSLI GKGCMC 1 cut(s) 242
BstUI CGCG 1 cut(s) 429
BstV1I GCAGC 1 cut(s) 566
BsuI GTATCC 1 cut(s) 392
BsuRI GGCC 2 cut(s) 112, 616
BtsCI GGATG 4 cut(s) 212, 464, 542, 870
BtsI GCAGTG 1 cut(s) 589
BtsIMutI CAGTG 1 cut(s) 589
BveI ACCTGC 1 cut(s) 334
Cac8I GCNNGC 4 cut(s) 137, 550, 614, 645
Cfr10I RCCGGY 1 cut(s) 612
Cfr13I GGNCC 1 cut(s) 615
CseI GACGC 1 cut(s) 421
Csp6I GTAC 1 cut(s) 169
CviAII CATG 4 cut(s) 267, 609, 699, 835
CviQI GTAC 1 cut(s) 169
DpnI GATC 1 cut(s) 570
DpnII GATC 1 cut(s) 568
Eco130I CCWWGG 1 cut(s) 349
Eco32I GATATC 1 cut(s) 472
Eco57I CTGAAG 1 cut(s) 482
Eco88I CYCGRG 1 cut(s) 172
EcoNI CCTNNNNNAGG 1 cut(s) 353
EcoRII CCWGG 2 cut(s) 112, 793
EcoRV GATATC 1 cut(s) 472
EcoT14I CCWWGG 1 cut(s) 349
ErhI CCWWGG 1 cut(s) 349
Esp3I CGTCTC 1 cut(s) 858
FaeI CATG 4 cut(s) 270, 612, 702, 838
FaqI GGGAC 3 cut(s) 189, 636, 760
FatI CATG 4 cut(s) 266, 608, 698, 834
FauI CCCGC 1 cut(s) 807
Fnu4HI GCNGC 2 cut(s) 430, 580
FokI GGATG 4 cut(s) 219, 471, 549, 857
Fsp4HI GCNGC 2 cut(s) 430, 580
FspBI CTAG 2 cut(s) 228, 296
GluI GCNGC 2 cut(s) 430, 580
GsaI CCCAGC 1 cut(s) 804
HaeIII GGCC 2 cut(s) 112, 616
HapII CCGG 5 cut(s) 126, 156, 203, 456, 613
HgaI GACGC 1 cut(s) 421
Hin1I GRCGYC 1 cut(s) 432
Hin1II CATG 4 cut(s) 270, 612, 702, 838
HinfI GANTC 3 cut(s) 194, 258, 755
HpaII CCGG 5 cut(s) 126, 156, 203, 456, 613
HphI GGTGA 1 cut(s) 290
Hpy166II GTNNAC 2 cut(s) 240, 587
Hpy188I TCNGA 5 cut(s) 150, 263, 469, 489, 832
Hpy188III TCNNGA 2 cut(s) 174, 874
Hpy8I GTNNAC 2 cut(s) 240, 587
Hpy99I CGWCG 1 cut(s) 154
HpyAV CCTTC 4 cut(s) 61, 285, 515, 799
HpyCH4III ACNGT 4 cut(s) 95, 284, 591, 634
HpyCH4V TGCA 4 cut(s) 240, 540, 582, 702
HpyF10VI GCNNNNNNNGC 1 cut(s) 449
Hsp92I GRCGYC 1 cut(s) 432
Hsp92II CATG 4 cut(s) 270, 612, 702, 838
KroI GCCGGC 1 cut(s) 612
KroNI GCCGGC 1 cut(s) 614
Kzo9I GATC 1 cut(s) 568
Lsp1109I GCAGC 1 cut(s) 566
LweI GCATC 1 cut(s) 527
MaeI CTAG 2 cut(s) 228, 296
MaeIII GTNAC 2 cut(s) 278, 446
MalI GATC 1 cut(s) 570
MboI GATC 1 cut(s) 568
MboII GAAGA 1 cut(s) 857
MhlI GDGCHC 1 cut(s) 242
MluCI AATT 2 cut(s) 189, 846
MlyI GAGTC 1 cut(s) 267
MmeI TCCRAC 2 cut(s) 173, 241
MroNI GCCGGC 1 cut(s) 612
MroXI GAANNNNTTC 1 cut(s) 193
MspA1I CMGCKG 1 cut(s) 166
MspI CCGG 5 cut(s) 126, 156, 203, 456, 613
MspR9I CCNGG 4 cut(s) 114, 157, 204, 795
MvaI CCWGG 2 cut(s) 114, 795
MvnI CGCG 1 cut(s) 429
MwoI GCNNNNNNNGC 1 cut(s) 449
NaeI GCCGGC 1 cut(s) 614
NciI CCSGG 2 cut(s) 157, 204
NdeII GATC 1 cut(s) 568
NgoMIV GCCGGC 1 cut(s) 612
NlaIII CATG 4 cut(s) 270, 612, 702, 838
NlaIV GGNNCC 2 cut(s) 316, 774
NmuCI GTSAC 1 cut(s) 278
NspI RCATGY 4 cut(s) 270, 612, 702, 838
PaqCI CACCTGC 1 cut(s) 334
PciI ACATGT 1 cut(s) 266
PcsI WCGNNNNNNNCGW 1 cut(s) 755
PdiI GCCGGC 1 cut(s) 614
PdmI GAANNNNTTC 1 cut(s) 193
PfeI GAWTC 2 cut(s) 194, 755
PfoI TCCNGGA 1 cut(s) 202
PkrI GCNGC 2 cut(s) 431, 581
PleI GAGTC 1 cut(s) 266
PpsI GAGTC 1 cut(s) 266
PscI ACATGT 1 cut(s) 266
Psp6I CCWGG 2 cut(s) 112, 793
PspFI CCCAGC 1 cut(s) 800
PspGI CCWGG 2 cut(s) 112, 793
PspN4I GGNNCC 2 cut(s) 316, 774
PspPI GGNCC 1 cut(s) 615
PstI CTGCAG 1 cut(s) 584
PvuII CAGCTG 1 cut(s) 166
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
SatI GCNGC 2 cut(s) 430, 580
Sau3AI GATC 1 cut(s) 568
Sau96I GGNCC 1 cut(s) 615
SchI GAGTC 1 cut(s) 267
ScrFI CCNGG 4 cut(s) 114, 157, 204, 795
SduI GDGCHC 1 cut(s) 242
SfaNI GCATC 1 cut(s) 527
SfcI CTRYAG 1 cut(s) 580
Sse9I AATT 2 cut(s) 189, 846
SsiI CCGC 3 cut(s) 143, 429, 814
SspMI CTAG 2 cut(s) 228, 296
StyD4I CCNGG 4 cut(s) 112, 155, 202, 793
StyI CCWWGG 1 cut(s) 349
TaaI ACNGT 4 cut(s) 95, 284, 591, 634
TaqI TCGA 1 cut(s) 758
TasI AATT 2 cut(s) 189, 846
TatI WGTACW 1 cut(s) 168
TauI GCSGC 1 cut(s) 432
TfiI GAWTC 2 cut(s) 194, 755
TscAI CASTG 1 cut(s) 589
TseFI GTSAC 1 cut(s) 278
TseI GCWGC 1 cut(s) 579
Tsp45I GTSAC 1 cut(s) 278
TspDTI ATGAA 1 cut(s) 534
TspGWI ACGGA 1 cut(s) 840
TspRI CASTG 1 cut(s) 589
VneI GTGCAC 1 cut(s) 238
XagI CCTNNNNNAGG 1 cut(s) 353
XceI RCATGY 4 cut(s) 270, 612, 702, 838
XcmI CCANNNNNNNNNTGG 1 cut(s) 105
XmnI GAANNNNTTC 1 cut(s) 193
XspI CTAG 2 cut(s) 228, 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.