FvH4_7g33310

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0010371
Physical Location & Seq
Forward (+)
23711545 .. 23712789
1245 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g33310.t1

Sequence Viewer

Length: 588 bp
ATGGCAACGGTGCCACCCCACCCTGCTTCACTCTTTGAAATAACACTTGGCAAGGGCAATGACAAAGATTTCTACGATGTTAGCATTGTTGATGGATACAATTTGCCTCTTGTTGCCACCCCTCGCGGCGTTTATGGTACTTGTAACGCCACTGGATGTGTCTCGGATATTAACATAGGTTGTCCGAAAGAGCTTCAGGTGGTAGGAGGTGAAAGTGAAAGGAATGTGATTGGATGCAAGAGTGCCTGCGACGCGTTCGGTTCGGATCAGTATTGCTGCAGTGGACAGTTTGCTAATCCGACGACATGCCAGCCCTCCTCCTATTCAACCATTTTCAAGCGAGCTTGTCCAAGAGCTTACAGTTATGCTTTTGATGATGGCACAAGCACTTTTACATGCAAGGCTTTTGAATATGCCATTATTTTCTGCCCCAACGGCAATGGGACGAGTGAATCGGATAGCACGTTGGCACCTCCAAGATTTCAAGTGCCTGGCACCGGGAAGGTTGTGCAGGTCGCTTCCTCCTCAGACATGCTTTTACCAATTCTGCCGCTAATCTTTCTTCTTATCCTGACCATACTCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

196

Amino Acids

20.73

Weight (kDa)

4.73

Isoelectric Point (pI)

38.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 7 - 144 2.4e-50 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010371)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24620 AT5G24620 AT5G24620 AT5G24620
fragaria_vesca FvH4_7g33310
malus_domestica MD01G1231300.v1.1 MD07G1303300.v1.1
prunus_persica Prupe.2G322000_v2.0.a1
pyrus_communis pycom01g23930 pycom07g27620
rosa_chinensis RchiOBHm_Chr1g0383291
rosa_laevigata RLG00000026116
rosa_multiflora Rmu_sc0007173.1_g000020 Rmu_sc0014196.1_g000004
rosa_roxburghii Rroxscaffold_4G00277430
rosa_rugosa Rorug01G0440400
rosa_samantha Rh1AG465900 Rh1BG423300 Rh1CG436500 Rh1DG456000
rosa_wichuraiana Rw1G040650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 502
AccB1I GGYRCC 3 cut(s) 10, 469, 494
AccII CGCG 2 cut(s) 126, 254
AciI CCGC 2 cut(s) 126, 551
AclWI GGATC 1 cut(s) 273
AcuI CTGAAG 1 cut(s) 179
AfaI GTAC 1 cut(s) 139
AfiI CCNNNNNNNGG 1 cut(s) 497
AflIII ACRYGT 1 cut(s) 252
AgsI TTSAA 5 cut(s) 38, 327, 337, 410, 485
AjnI CCWGG 1 cut(s) 490
AjuI GAANNNNNNNTTGG 2 cut(s) 30, 62
AluBI AGCT 3 cut(s) 193, 344, 356
AluI AGCT 3 cut(s) 193, 344, 356
Alw26I GTCTC 1 cut(s) 166
AlwI GGATC 1 cut(s) 273
ApeKI GCWGC 1 cut(s) 276
AsuC2I CCSGG 1 cut(s) 499
AsuHPI GGTGA 1 cut(s) 221
BanI GGYRCC 3 cut(s) 10, 469, 494
BbvI GCAGC 1 cut(s) 263
BccI CCATC 2 cut(s) 86, 371
BceAI ACGGC 1 cut(s) 451
BciT130I CCWGG 1 cut(s) 492
BciVI GTATCC 1 cut(s) 89
BcnI CCSGG 1 cut(s) 499
BcoDI GTCTC 1 cut(s) 166
BfmI CTRYAG 1 cut(s) 277
BfuAI ACCTGC 1 cut(s) 502
BfuI GTATCC 1 cut(s) 89
BglI GCCNNNNNGGC 1 cut(s) 435
BisI GCNGC 3 cut(s) 127, 277, 551
BlsI GCNGC 3 cut(s) 128, 278, 552
Bme1390I CCNGG 2 cut(s) 492, 499
BmiI GGNNCC 3 cut(s) 12, 471, 496
BmrFI CCNGG 2 cut(s) 492, 499
BmsI GCATC 1 cut(s) 224
BpuMI CCSGG 1 cut(s) 499
Bsc4I CCNNNNNNNGG 1 cut(s) 497
Bse1I ACTGG 1 cut(s) 157
Bse3DI GCAATG 2 cut(s) 64, 445
BseBI CCWGG 1 cut(s) 492
BseGI GGATG 2 cut(s) 161, 239
BseLI CCNNNNNNNGG 1 cut(s) 497
BseMI GCAATG 2 cut(s) 64, 445
BseMII CTCAG 1 cut(s) 540
BseNI ACTGG 1 cut(s) 157
BseRI GAGGAG 2 cut(s) 307, 514
BseXI GCAGC 1 cut(s) 263
BsgI GTGCAG 1 cut(s) 530
Bsh1236I CGCG 2 cut(s) 126, 254
BshNI GGYRCC 3 cut(s) 10, 469, 494
BsiSI CCGG 1 cut(s) 498
BslFI GGGAC 1 cut(s) 457
BslI CCNNNNNNNGG 1 cut(s) 497
BsmAI GTCTC 1 cut(s) 166
BsmFI GGGAC 1 cut(s) 457
Bsp143I GATC 1 cut(s) 265
BspACI CCGC 2 cut(s) 126, 551
BspCNI CTCAG 1 cut(s) 539
BspFNI CGCG 2 cut(s) 126, 254
BspLI GGNNCC 3 cut(s) 12, 471, 496
BspMAI CTGCAG 1 cut(s) 281
BspMI ACCTGC 1 cut(s) 502
BspPI GGATC 1 cut(s) 273
BspT107I GGYRCC 3 cut(s) 10, 469, 494
BsrDI GCAATG 2 cut(s) 64, 445
BsrI ACTGG 1 cut(s) 157
BssMI GATC 1 cut(s) 265
Bst2UI CCWGG 1 cut(s) 492
Bst4CI ACNGT 3 cut(s) 10, 288, 362
BstC8I GCNNGC 3 cut(s) 247, 311, 342
BstDEI CTNAG 1 cut(s) 526
BstF5I GGATG 2 cut(s) 161, 239
BstFNI CGCG 2 cut(s) 126, 254
BstKTI GATC 1 cut(s) 268
BstMAI GTCTC 1 cut(s) 166
BstMBI GATC 1 cut(s) 265
BstMWI GCNNNNNNNGC 2 cut(s) 251, 435
BstNI CCWGG 1 cut(s) 492
BstNSI RCATGY 3 cut(s) 309, 399, 535
BstSCI CCNGG 2 cut(s) 490, 497
BstSFI CTRYAG 1 cut(s) 277
BstUI CGCG 2 cut(s) 126, 254
BstV1I GCAGC 1 cut(s) 263
BsuI GTATCC 1 cut(s) 89
BtsCI GGATG 2 cut(s) 161, 239
BtsI GCAGTG 1 cut(s) 286
BtsIMutI CAGTG 2 cut(s) 150, 286
BveI ACCTGC 1 cut(s) 502
Cac8I GCNNGC 3 cut(s) 247, 311, 342
CseI GACGC 1 cut(s) 260
Csp6I GTAC 1 cut(s) 138
CviAII CATG 3 cut(s) 306, 396, 532
CviJI RGCY 5 cut(s) 193, 313, 344, 356, 404
CviKI_1 RGCY 5 cut(s) 193, 313, 344, 356, 404
CviQI GTAC 1 cut(s) 138
DdeI CTNAG 1 cut(s) 526
DpnI GATC 1 cut(s) 267
DpnII GATC 1 cut(s) 265
Eco57I CTGAAG 1 cut(s) 179
EcoRII CCWGG 1 cut(s) 490
FaeI CATG 3 cut(s) 309, 399, 535
FaiI YATR 8 cut(s) 135, 176, 307, 366, 397, 414, 533, 578
FaqI GGGAC 1 cut(s) 457
FatI CATG 3 cut(s) 305, 395, 531
Fnu4HI GCNGC 3 cut(s) 127, 277, 551
FokI GGATG 2 cut(s) 168, 246
Fsp4HI GCNGC 3 cut(s) 127, 277, 551
GluI GCNGC 3 cut(s) 127, 277, 551
HapII CCGG 1 cut(s) 498
HgaI GACGC 1 cut(s) 260
Hin1II CATG 3 cut(s) 309, 399, 535
HinfI GANTC 1 cut(s) 452
HpaII CCGG 1 cut(s) 498
HphI GGTGA 1 cut(s) 221
Hpy166II GTNNAC 1 cut(s) 284
Hpy188I TCNGA 6 cut(s) 166, 186, 265, 300, 457, 529
Hpy188III TCNNGA 1 cut(s) 571
Hpy8I GTNNAC 1 cut(s) 284
Hpy99I CGWCG 2 cut(s) 254, 304
HpyAV CCTTC 1 cut(s) 496
HpyCH4III ACNGT 3 cut(s) 10, 288, 362
HpyCH4IV ACGT 1 cut(s) 464
HpyCH4V TGCA 4 cut(s) 237, 279, 399, 511
HpyF10VI GCNNNNNNNGC 2 cut(s) 251, 435
HpyF3I CTNAG 1 cut(s) 526
HpySE526I ACGT 1 cut(s) 464
Hsp92II CATG 3 cut(s) 309, 399, 535
Kzo9I GATC 1 cut(s) 265
Lsp1109I GCAGC 1 cut(s) 263
LweI GCATC 1 cut(s) 224
MaeII ACGT 1 cut(s) 464
MaeIII GTNAC 1 cut(s) 143
MalI GATC 1 cut(s) 267
MboI GATC 1 cut(s) 265
MboII GAAGA 1 cut(s) 554
MluCI AATT 2 cut(s) 100, 543
MluI ACGCGT 1 cut(s) 252
MmeI TCCRAC 1 cut(s) 323
MnlI CCTC 8 cut(s) 117, 132, 200, 325, 328, 483, 532, 535
MseI TTAA 1 cut(s) 171
MspI CCGG 1 cut(s) 498
MspR9I CCNGG 2 cut(s) 492, 499
MvaI CCWGG 1 cut(s) 492
MvnI CGCG 2 cut(s) 126, 254
MwoI GCNNNNNNNGC 2 cut(s) 251, 435
NciI CCSGG 1 cut(s) 499
NdeII GATC 1 cut(s) 265
NlaIII CATG 3 cut(s) 309, 399, 535
NlaIV GGNNCC 3 cut(s) 12, 471, 496
NspI RCATGY 3 cut(s) 309, 399, 535
PcsI WCGNNNNNNNCGW 1 cut(s) 461
PfeI GAWTC 1 cut(s) 452
PkrI GCNGC 3 cut(s) 128, 278, 552
Psp6I CCWGG 1 cut(s) 490
PspGI CCWGG 1 cut(s) 490
PspN4I GGNNCC 3 cut(s) 12, 471, 496
PstI CTGCAG 1 cut(s) 281
RsaI GTAC 1 cut(s) 139
RsaNI GTAC 1 cut(s) 138
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 3 cut(s) 127, 277, 551
Sau3AI GATC 1 cut(s) 265
ScrFI CCNGG 2 cut(s) 492, 499
SfaNI GCATC 1 cut(s) 224
SfcI CTRYAG 1 cut(s) 277
Sse9I AATT 2 cut(s) 100, 543
SsiI CCGC 2 cut(s) 126, 551
StyD4I CCNGG 2 cut(s) 490, 497
TaaI ACNGT 3 cut(s) 10, 288, 362
TaiI ACGT 1 cut(s) 467
TasI AATT 2 cut(s) 100, 543
TauI GCSGC 2 cut(s) 129, 553
TfiI GAWTC 1 cut(s) 452
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TscAI CASTG 2 cut(s) 157, 286
TseI GCWGC 1 cut(s) 276
TspRI CASTG 2 cut(s) 157, 286
XceI RCATGY 3 cut(s) 309, 399, 535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.