MD01G1231300.v1.1

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0010371
Physical Location & Seq
Forward (+)
32029175 .. 32030315
1141 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1231300.v1.1.491

Sequence Viewer

Length: 906 bp
ATGCCATTTACGACGAGACCTCAAACTTTTCTTCGCTTCTCTTACATCCTCGTTCCTTTTTTCATCTCTTTATCGTACTCGGCCACATTCACTATAACAAACAACTGCCCGGAAACCATCTGGCCCGGCACATTAGCGGCTTCTGGCACCCCTCAGCTCCCAACAACGGGGTTTCGGTTGGACCCCGGCCAGAGTGTGAAACTTCCTTCTACTCCAGGATGGTCGGGGCGTATATGGGCTAGGACAGGTTGCACATTCGATGAGCTGGGAGCTGGCACGTGTCAAACTGGCGACTGTGGAGGCAGGCTGGAATGTGGTGGCAGTGGTGCCACTCCACCTGCCTCGCTATTTGAGATAACTCTTGGCAACGGCAATGGTATAGATTTCTACGATGTCAGCATTGTAGACGGCTACAATCTGCCCCTCATTGCCGCCCCACGCGGCGTGTTTGGTGCATGTAATGCCACCGGCTGCGTTTCGGATATCAACACAGGTTGCCCGAAAGAGCTTCAGGTGGTGGGAGGAGGAAGCGAAGGGAGCGTGATCGGATGCAAGAGCGCCTGCGAGGCATTTGGTTTGGACCAGTACTGCTGCAGCGGACAGTTTGCTAACCCGACGACATGCCAGCCTTCCAATTATTCCACCATTTTCAAAAGAGCTTGTCCAAGAGCTTACAGTTATGCTTTTGATGATGGCACAAGCACTTTTACATGCAAGGCTTTTGATTACGCCATTTTCTTCTGCCCCAACGGCAACGGGATTAGAAACTCAGATGATGCGCTAGCTCCTCCGAGATATGAAGTGCTTGGCAGTAGGAAGGTTGTGTCGATGGTTTATTCTTCTTCAAACAGGCTCTTACCAGTTCCGCTGCTAATCCTTCTTCTCATCGTCTACATATTATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

302

Amino Acids

31.97

Weight (kDa)

5.22

Isoelectric Point (pI)

37.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 34 - 249 1.6e-82 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010371)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24620 AT5G24620 AT5G24620 AT5G24620
fragaria_vesca FvH4_7g33310
malus_domestica MD01G1231300.v1.1 MD07G1303300.v1.1
prunus_persica Prupe.2G322000_v2.0.a1
pyrus_communis pycom01g23930 pycom07g27620
rosa_chinensis RchiOBHm_Chr1g0383291
rosa_laevigata RLG00000026116
rosa_multiflora Rmu_sc0007173.1_g000020 Rmu_sc0014196.1_g000004
rosa_roxburghii Rroxscaffold_4G00277430
rosa_rugosa Rorug01G0440400
rosa_samantha Rh1AG465900 Rh1BG423300 Rh1CG436500 Rh1DG456000
rosa_wichuraiana Rw1G040650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 346
Acc36I ACCTGC 1 cut(s) 346
AccB1I GGYRCC 2 cut(s) 146, 326
AccI GTMKAC 2 cut(s) 405, 891
AccII CGCG 1 cut(s) 441
AciI CCGC 5 cut(s) 137, 432, 441, 597, 866
AcoI YGGCCR 2 cut(s) 81, 187
AcuI CTGAAG 1 cut(s) 494
AcvI CACGTG 1 cut(s) 279
AfaI GTAC 2 cut(s) 77, 587
AfiI CCNNNNNNNGG 2 cut(s) 166, 167
AflIII ACRYGT 1 cut(s) 278
AgsI TTSAA 2 cut(s) 652, 846
AjnI CCWGG 1 cut(s) 214
AluBI AGCT 7 cut(s) 157, 265, 272, 508, 659, 671, 785
AluI AGCT 7 cut(s) 157, 265, 272, 508, 659, 671, 785
Alw26I GTCTC 1 cut(s) 10
AoxI GGCC 3 cut(s) 81, 122, 187
ApeKI GCWGC 4 cut(s) 471, 591, 594, 868
AspLEI GCGC 2 cut(s) 560, 781
AspS9I GGNCC 3 cut(s) 123, 181, 580
AsuC2I CCSGG 3 cut(s) 110, 126, 186
AsuNHI GCTAGC 1 cut(s) 781
AvaII GGWCC 2 cut(s) 181, 580
BanI GGYRCC 2 cut(s) 146, 326
BbrPI CACGTG 1 cut(s) 279
BbvCI CCTCAGC 1 cut(s) 153
BbvI GCAGC 4 cut(s) 458, 578, 606, 855
BccI CCATC 4 cut(s) 125, 213, 686, 823
BceAI ACGGC 3 cut(s) 385, 424, 766
BciT130I CCWGG 1 cut(s) 216
BcnI CCSGG 3 cut(s) 110, 126, 186
BcoDI GTCTC 1 cut(s) 10
BfaI CTAG 2 cut(s) 240, 782
BfmI CTRYAG 1 cut(s) 592
BfoI RGCGCY 1 cut(s) 561
BfuAI ACCTGC 1 cut(s) 346
BglI GCCNNNNNGGC 2 cut(s) 566, 750
BisI GCNGC 7 cut(s) 138, 432, 442, 472, 592, 595, 869
BlsI GCNGC 7 cut(s) 139, 433, 443, 473, 593, 596, 870
BmcAI AGTACT 1 cut(s) 587
Bme1390I CCNGG 4 cut(s) 110, 126, 186, 216
Bme18I GGWCC 2 cut(s) 181, 580
BmgT120I GGNCC 3 cut(s) 123, 181, 580
BmiI GGNNCC 3 cut(s) 148, 183, 328
BmrFI CCNGG 4 cut(s) 110, 126, 186, 216
BmsI GCATC 2 cut(s) 539, 766
BmtI GCTAGC 1 cut(s) 785
BpmI CTGGAG 1 cut(s) 198
Bpu10I CCTNAGC 1 cut(s) 153
BpuMI CCSGG 3 cut(s) 110, 126, 186
BsaAI YACGTR 1 cut(s) 279
BsaI GGTCTC 1 cut(s) 10
BsaJI CCNNGG 1 cut(s) 184
Bsc4I CCNNNNNNNGG 2 cut(s) 166, 167
Bse118I RCCGGY 1 cut(s) 467
Bse1I ACTGG 3 cut(s) 292, 583, 860
Bse3DI GCAATG 2 cut(s) 379, 426
BseBI CCWGG 1 cut(s) 216
BseDI CCNNGG 1 cut(s) 184
BseGI GGATG 3 cut(s) 45, 224, 554
BseLI CCNNNNNNNGG 2 cut(s) 166, 167
BseMI GCAATG 2 cut(s) 379, 426
BseMII CTCAG 2 cut(s) 167, 783
BseNI ACTGG 3 cut(s) 292, 583, 860
BseRI GAGGAG 2 cut(s) 537, 777
BseXI GCAGC 4 cut(s) 458, 578, 606, 855
BseYI CCCAGC 1 cut(s) 265
Bsh1236I CGCG 1 cut(s) 441
BshFI GGCC 3 cut(s) 83, 124, 189
BshNI GGYRCC 2 cut(s) 146, 326
BsiSI CCGG 4 cut(s) 110, 126, 186, 468
BslI CCNNNNNNNGG 2 cut(s) 166, 167
BsmAI GTCTC 1 cut(s) 10
BsnI GGCC 3 cut(s) 83, 124, 189
Bso31I GGTCTC 1 cut(s) 10
Bsp143I GATC 1 cut(s) 543
BspACI CCGC 5 cut(s) 137, 432, 441, 597, 866
BspANI GGCC 3 cut(s) 83, 124, 189
BspCNI CTCAG 2 cut(s) 166, 782
BspFNI CGCG 1 cut(s) 441
BspLI GGNNCC 3 cut(s) 148, 183, 328
BspMAI CTGCAG 1 cut(s) 596
BspMI ACCTGC 1 cut(s) 346
BspOI GCTAGC 1 cut(s) 785
BspT107I GGYRCC 2 cut(s) 146, 326
BspTNI GGTCTC 1 cut(s) 10
BsrDI GCAATG 2 cut(s) 379, 426
BsrFI RCCGGY 1 cut(s) 467
BsrI ACTGG 3 cut(s) 292, 583, 860
BssAI RCCGGY 1 cut(s) 467
BssECI CCNNGG 1 cut(s) 184
BssMI GATC 1 cut(s) 543
Bst2UI CCWGG 1 cut(s) 216
Bst4CI ACNGT 3 cut(s) 296, 603, 677
BstAPI GCANNNNNTGC 1 cut(s) 461
BstBAI YACGTR 1 cut(s) 279
BstC8I GCNNGC 5 cut(s) 274, 305, 562, 626, 783
BstDEI CTNAG 2 cut(s) 153, 769
BstF5I GGATG 3 cut(s) 45, 224, 554
BstFNI CGCG 1 cut(s) 441
BstH2I RGCGCY 1 cut(s) 561
BstHHI GCGC 2 cut(s) 560, 781
BstKTI GATC 1 cut(s) 546
BstMAI GTCTC 1 cut(s) 10
BstMBI GATC 1 cut(s) 543
BstMWI GCNNNNNNNGC 4 cut(s) 461, 537, 566, 750
BstNI CCWGG 1 cut(s) 216
BstNSI RCATGY 3 cut(s) 459, 624, 714
BstSCI CCNGG 4 cut(s) 108, 124, 184, 214
BstSFI CTRYAG 1 cut(s) 592
BstUI CGCG 1 cut(s) 441
BstV1I GCAGC 4 cut(s) 458, 578, 606, 855
BsuRI GGCC 3 cut(s) 83, 124, 189
BtsCI GGATG 3 cut(s) 45, 224, 554
BtsI GCAGTG 1 cut(s) 328
BtsIMutI CAGTG 1 cut(s) 328
BveI ACCTGC 1 cut(s) 346
Cac8I GCNNGC 5 cut(s) 274, 305, 562, 626, 783
CfoI GCGC 2 cut(s) 560, 781
Cfr10I RCCGGY 1 cut(s) 467
Cfr13I GGNCC 3 cut(s) 123, 181, 580
Csp6I GTAC 2 cut(s) 76, 586
CviAII CATG 3 cut(s) 456, 621, 711
CviQI GTAC 2 cut(s) 76, 586
DdeI CTNAG 2 cut(s) 153, 769
DpnI GATC 1 cut(s) 545
DpnII GATC 1 cut(s) 543
EaeI YGGCCR 2 cut(s) 81, 187
Eco31I GGTCTC 1 cut(s) 10
Eco32I GATATC 1 cut(s) 484
Eco47I GGWCC 2 cut(s) 181, 580
Eco57I CTGAAG 1 cut(s) 494
Eco72I CACGTG 1 cut(s) 279
EcoRII CCWGG 1 cut(s) 214
EcoRV GATATC 1 cut(s) 484
FaeI CATG 3 cut(s) 459, 624, 714
FatI CATG 3 cut(s) 455, 620, 710
FblI GTMKAC 2 cut(s) 405, 891
Fnu4HI GCNGC 7 cut(s) 138, 432, 442, 472, 592, 595, 869
FokI GGATG 3 cut(s) 32, 231, 561
Fsp4HI GCNGC 7 cut(s) 138, 432, 442, 472, 592, 595, 869
FspBI CTAG 2 cut(s) 240, 782
GlaI GCGC 2 cut(s) 559, 780
GluI GCNGC 7 cut(s) 138, 432, 442, 472, 592, 595, 869
GsaI CCCAGC 1 cut(s) 269
GsuI CTGGAG 1 cut(s) 198
HaeII RGCGCY 1 cut(s) 561
HaeIII GGCC 3 cut(s) 83, 124, 189
HapII CCGG 4 cut(s) 110, 126, 186, 468
HhaI GCGC 2 cut(s) 560, 781
Hin1II CATG 3 cut(s) 459, 624, 714
Hin6I GCGC 2 cut(s) 558, 779
HinP1I GCGC 2 cut(s) 558, 779
HpaII CCGG 4 cut(s) 110, 126, 186, 468
Hpy166II GTNNAC 2 cut(s) 406, 892
Hpy188I TCNGA 4 cut(s) 481, 548, 772, 792
Hpy188III TCNNGA 1 cut(s) 903
Hpy8I GTNNAC 2 cut(s) 406, 892
Hpy99I CGWCG 2 cut(s) 16, 619
HpyAV CCTTC 5 cut(s) 216, 527, 639, 811, 887
HpyCH4III ACNGT 3 cut(s) 296, 603, 677
HpyCH4IV ACGT 1 cut(s) 278
HpyCH4V TGCA 5 cut(s) 252, 455, 552, 594, 714
HpyF10VI GCNNNNNNNGC 4 cut(s) 461, 537, 566, 750
HpyF3I CTNAG 2 cut(s) 153, 769
HpySE526I ACGT 1 cut(s) 278
Hsp92II CATG 3 cut(s) 459, 624, 714
HspAI GCGC 2 cut(s) 558, 779
Kzo9I GATC 1 cut(s) 543
LmnI GCTCC 4 cut(s) 162, 269, 537, 790
Lsp1109I GCAGC 4 cut(s) 458, 578, 606, 855
LweI GCATC 2 cut(s) 539, 766
MaeI CTAG 2 cut(s) 240, 782
MaeII ACGT 1 cut(s) 278
MalI GATC 1 cut(s) 545
MboI GATC 1 cut(s) 543
MboII GAAGA 5 cut(s) 23, 730, 831, 834, 872
MluCI AATT 1 cut(s) 634
MmeI TCCRAC 1 cut(s) 159
MspA1I CMGCKG 2 cut(s) 597, 868
MspI CCGG 4 cut(s) 110, 126, 186, 468
MspR9I CCNGG 4 cut(s) 110, 126, 186, 216
MvaI CCWGG 1 cut(s) 216
MvnI CGCG 1 cut(s) 441
MwoI GCNNNNNNNGC 4 cut(s) 461, 537, 566, 750
NciI CCSGG 3 cut(s) 110, 126, 186
NdeII GATC 1 cut(s) 543
NheI GCTAGC 1 cut(s) 781
NlaIII CATG 3 cut(s) 459, 624, 714
NlaIV GGNNCC 3 cut(s) 148, 183, 328
NmeAIII GCCGAG 1 cut(s) 59
NspI RCATGY 3 cut(s) 459, 624, 714
PaqCI CACCTGC 1 cut(s) 346
PfoI TCCNGGA 1 cut(s) 214
PkrI GCNGC 7 cut(s) 139, 433, 443, 473, 593, 596, 870
PmaCI CACGTG 1 cut(s) 279
PmlI CACGTG 1 cut(s) 279
Ppu21I YACGTR 1 cut(s) 279
Psp6I CCWGG 1 cut(s) 214
PspCI CACGTG 1 cut(s) 279
PspFI CCCAGC 1 cut(s) 265
PspGI CCWGG 1 cut(s) 214
PspN4I GGNNCC 3 cut(s) 148, 183, 328
PspPI GGNCC 3 cut(s) 123, 181, 580
PstI CTGCAG 1 cut(s) 596
RsaI GTAC 2 cut(s) 77, 587
RsaNI GTAC 2 cut(s) 76, 586
SatI GCNGC 7 cut(s) 138, 432, 442, 472, 592, 595, 869
Sau3AI GATC 1 cut(s) 543
Sau96I GGNCC 3 cut(s) 123, 181, 580
ScaI AGTACT 1 cut(s) 587
ScrFI CCNGG 4 cut(s) 110, 126, 186, 216
SfaNI GCATC 2 cut(s) 539, 766
SfcI CTRYAG 1 cut(s) 592
SinI GGWCC 2 cut(s) 181, 580
Sse9I AATT 1 cut(s) 634
SsiI CCGC 5 cut(s) 137, 432, 441, 597, 866
SspMI CTAG 2 cut(s) 240, 782
StyD4I CCNGG 4 cut(s) 108, 124, 184, 214
TaaI ACNGT 3 cut(s) 296, 603, 677
TaiI ACGT 1 cut(s) 281
TaqI TCGA 2 cut(s) 258, 827
TasI AATT 1 cut(s) 634
TatI WGTACW 1 cut(s) 585
TauI GCSGC 3 cut(s) 140, 434, 444
TscAI CASTG 1 cut(s) 328
TseI GCWGC 4 cut(s) 471, 591, 594, 868
TspDTI ATGAA 2 cut(s) 52, 813
TspRI CASTG 1 cut(s) 328
VpaK11BI GGWCC 2 cut(s) 181, 580
XceI RCATGY 3 cut(s) 459, 624, 714
XmiI GTMKAC 2 cut(s) 405, 891
XspI CTAG 2 cut(s) 240, 782
ZrmI AGTACT 1 cut(s) 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.