Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003451

Physical Location & Seq

Genomic Coordinates Forward (+)

53862568 .. 53865234

Gene Structure 2667 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0440400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGTTTTCGTTGTTTTATGGACTCTGGAAGTATATGTTTAGCAAGACAGAGTTTCATGTACTCATTCTTGGAATTGACAAGGCTGGGAAAACGACTTTGCTGGAGAAGTTGAAATCAGTTTACTCAAATTTGGAAGGTCTCCCTCCTGATCGAATTGTTCCAACTGTGGGACTTAATATTGGTCGTATCGAAGTTTCAAATACTAAACTTGTGTTCTGGGACCTGGGAGGTCAGCCTGGTCTTCGCTCAATCTGGGAGAAATATTATGAAGAAGCGCATGCTGTGGTCTATGTAATTGATGCTACTTGCCCATCACGTTTTGAAGATTCAAAATCTGCATTGGAAAAAGTTCTTCGGCACGAGGATCTGCAAGGAGCTCCTCTGTTGATATTGGCCAATAAGCAGGATCTTAATGATGCTGTATCATCCGAGGAACTTGCTCGATATCTAGATCTTAAAAAGTTGGATGAAAGAGTTTACATGTTTGAAGCTGTTTCAGCATATGACGGGATGGGGATTAAAGAAAGCGTAGAGTGGTTGGTGGAGGTAATGGAGAGAAGCAAGAGAACTGAAACGTTGAGAGCTCGTGCAGGAGGCCCAGCCTCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0006403 GO:0006605 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016031 GO:0016043 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0035927 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051031 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0055085 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098805 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_1 Tim17

Protein Analysis

203

Amino Acids

22.95

Weight (kDa)

5.53

Isoelectric Point (pI)

50.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	10 - 182	2e-50	ADP-ribosylation factor family
Ras	PF00071	20 - 184	1e-11	Ras family
Roc	PF08477	20 - 136	6.4e-10	Ras of Complex, Roc, domain of DAPkinase
MMR_HSR1	PF01926	20 - 134	2.3e-06	50S ribosome-binding GTPase
Gtr1_RagA	PF04670	20 - 145	2.6e-06	Gtr1/RagA G protein conserved region
G-alpha	PF00503	53 - 137	2.3e-06	G-protein alpha subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630
fragaria_vesca	FvH4_7g33320 FvH4_7g33320
malus_domestica	MD01G1231400.v1.1 MD07G1303400.v1.1
prunus_persica	Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1
pyrus_communis	pycom01g23940 pycom07g27630
rosa_chinensis	RchiOBHm_Chr1g0383301
rosa_laevigata	RLG00000026115
rosa_multiflora	Rmu_sc0007173.1_g000019 Rmu_sc0014196.1_g000003
rosa_roxburghii	Rroxscaffold_4G00277420
rosa_rugosa	Rorug01G0440400 Rorug01G0440400
rosa_samantha	Rh1AG466000 Rh1BG423400 Rh1CG436600 Rh1DG456100
rosa_wichuraiana	Rw1G040640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	575
AclWI	GGATC	2 cut(s)	372, 414
AcoI	YGGCCR	1 cut(s)	393
AcsI	RAATTY	1 cut(s)	127
AfaI	GTAC	1 cut(s)	60
AfiI	CCNNNNNNNGG	1 cut(s)	167
AflIII	ACRYGT	1 cut(s)	480
AgsI	TTSAA	5 cut(s)	112, 198, 323, 330, 488
AjnI	CCWGG	2 cut(s)	222, 235
AluBI	AGCT	3 cut(s)	377, 491, 584
AluI	AGCT	3 cut(s)	377, 491, 584
Alw21I	GWGCWC	2 cut(s)	379, 586
Alw26I	GTCTC	1 cut(s)	143
AlwI	GGATC	2 cut(s)	372, 414
AlwNI	CAGNNNCTG	1 cut(s)	605
AoxI	GGCC	2 cut(s)	393, 595
ApoI	RAATTY	1 cut(s)	127
Asp700I	GAANNNNTTC	1 cut(s)	348
AspLEI	GCGC	1 cut(s)	277
AspS9I	GGNCC	2 cut(s)	220, 596
AvaII	GGWCC	1 cut(s)	220
BalI	TGGCCA	1 cut(s)	395
BanII	GRGCYC	2 cut(s)	379, 586
BauI	CACGAG	2 cut(s)	359, 585
BbsI	GAAGAC	1 cut(s)	233
Bbv12I	GWGCWC	2 cut(s)	379, 586
BccI	CCATC	2 cut(s)	319, 505
BcgI	CGANNNNNNTGC	2 cut(s)	419, 453
BciT130I	CCWGG	2 cut(s)	224, 237
BcoDI	GTCTC	1 cut(s)	143
BfaI	CTAG	1 cut(s)	449
BglII	AGATCT	1 cut(s)	451
Bme1390I	CCNGG	2 cut(s)	224, 237
Bme18I	GGWCC	1 cut(s)	220
BmgT120I	GGNCC	2 cut(s)	220, 596
BmiI	GGNNCC	1 cut(s)	221
BmrFI	CCNGG	2 cut(s)	224, 237
BmsI	GCATC	2 cut(s)	289, 406
BpiI	GAAGAC	1 cut(s)	233
BpmI	CTGGAG	1 cut(s)	122
BsaI	GGTCTC	1 cut(s)	143
BsaJI	CCNNGG	2 cut(s)	223, 429
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
BseBI	CCWGG	2 cut(s)	224, 237
BseDI	CCNNGG	2 cut(s)	223, 429
BseGI	GGATG	3 cut(s)	425, 472, 516
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseRI	GAGGAG	1 cut(s)	369
BseYI	CCCAGC	2 cut(s)	83, 598
BsgI	GTGCAG	1 cut(s)	609
BshFI	GGCC	2 cut(s)	395, 597
BsiHKAI	GWGCWC	2 cut(s)	379, 586
BslFI	GGGAC	2 cut(s)	183, 233
BslI	CCNNNNNNNGG	1 cut(s)	167
BsmAI	GTCTC	1 cut(s)	143
BsmFI	GGGAC	2 cut(s)	183, 233
BsnI	GGCC	2 cut(s)	395, 597
Bso31I	GGTCTC	1 cut(s)	143
Bsp1286I	GDGCHC	2 cut(s)	379, 586
Bsp143I	GATC	4 cut(s)	148, 364, 406, 451
BspANI	GGCC	2 cut(s)	395, 597
BspLI	GGNNCC	1 cut(s)	221
BspPI	GGATC	2 cut(s)	372, 414
BspTNI	GGTCTC	1 cut(s)	143
BssECI	CCNNGG	2 cut(s)	223, 429
BssMI	GATC	4 cut(s)	148, 364, 406, 451
BssSI	CACGAG	2 cut(s)	359, 585
Bst2BI	CACGAG	2 cut(s)	359, 585
Bst2UI	CCWGG	2 cut(s)	224, 237
Bst4CI	ACNGT	1 cut(s)	166
BstC8I	GCNNGC	1 cut(s)	279
BstDEI	CTNAG	1 cut(s)	609
BstF5I	GGATG	3 cut(s)	425, 472, 516
BstHHI	GCGC	1 cut(s)	277
BstKTI	GATC	4 cut(s)	151, 367, 409, 454
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	4 cut(s)	148, 364, 406, 451
BstMWI	GCNNNNNNNGC	1 cut(s)	497
BstNI	CCWGG	2 cut(s)	224, 237
BstNSI	RCATGY	2 cut(s)	281, 484
BstSCI	CCNGG	2 cut(s)	222, 235
BstV2I	GAAGAC	1 cut(s)	233
BstX2I	RGATCY	3 cut(s)	364, 406, 451
BstYI	RGATCY	3 cut(s)	364, 406, 451
BsuRI	GGCC	2 cut(s)	395, 597
BtsCI	GGATG	3 cut(s)	425, 472, 516
Cac8I	GCNNGC	1 cut(s)	279
CaiI	CAGNNNCTG	1 cut(s)	605
CfoI	GCGC	1 cut(s)	277
Cfr13I	GGNCC	2 cut(s)	220, 596
Csp6I	GTAC	1 cut(s)	59
CviAII	CATG	3 cut(s)	56, 278, 481
CviJI	RGCY	8 cut(s)	83, 235, 377, 395, 491, 584, 597, 602
CviKI_1	RGCY	8 cut(s)	83, 235, 377, 395, 491, 584, 597, 602
CviQI	GTAC	1 cut(s)	59
DdeI	CTNAG	1 cut(s)	609
DpnI	GATC	4 cut(s)	150, 366, 408, 453
DpnII	GATC	4 cut(s)	148, 364, 406, 451
EaeI	YGGCCR	1 cut(s)	393
Ecl136II	GAGCTC	2 cut(s)	377, 584
Eco24I	GRGCYC	2 cut(s)	379, 586
Eco31I	GGTCTC	1 cut(s)	143
Eco32I	GATATC	1 cut(s)	446
Eco47I	GGWCC	1 cut(s)	220
Eco53kI	GAGCTC	2 cut(s)	377, 584
EcoICRI	GAGCTC	2 cut(s)	377, 584
EcoO109I	RGGNCCY	1 cut(s)	220
EcoRII	CCWGG	2 cut(s)	222, 235
EcoRV	GATATC	1 cut(s)	446
EcoT38I	GRGCYC	2 cut(s)	379, 586
FaeI	CATG	3 cut(s)	59, 281, 484
FaqI	GGGAC	2 cut(s)	183, 233
FatI	CATG	3 cut(s)	55, 277, 480
FauNDI	CATATG	1 cut(s)	502
FokI	GGATG	3 cut(s)	412, 479, 523
FriOI	GRGCYC	2 cut(s)	379, 586
FspBI	CTAG	1 cut(s)	449
GlaI	GCGC	1 cut(s)	276
GsaI	CCCAGC	2 cut(s)	87, 602
GsuI	CTGGAG	1 cut(s)	122
HaeIII	GGCC	2 cut(s)	395, 597
HhaI	GCGC	1 cut(s)	277
Hin1II	CATG	3 cut(s)	59, 281, 484
Hin6I	GCGC	1 cut(s)	275
HinP1I	GCGC	1 cut(s)	275
HinfI	GANTC	2 cut(s)	21, 326
Hpy166II	GTNNAC	2 cut(s)	121, 478
Hpy188I	TCNGA	1 cut(s)	430
Hpy188III	TCNNGA	3 cut(s)	25, 146, 449
Hpy8I	GTNNAC	2 cut(s)	121, 478
HpyAV	CCTTC	1 cut(s)	128
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4IV	ACGT	2 cut(s)	316, 575
HpyCH4V	TGCA	3 cut(s)	338, 370, 590
HpyF10VI	GCNNNNNNNGC	1 cut(s)	497
HpyF3I	CTNAG	1 cut(s)	609
HpySE526I	ACGT	2 cut(s)	316, 575
Hsp92II	CATG	3 cut(s)	59, 281, 484
HspAI	GCGC	1 cut(s)	275
Kzo9I	GATC	4 cut(s)	148, 364, 406, 451
LmnI	GCTCC	2 cut(s)	374, 382
LweI	GCATC	2 cut(s)	289, 406
MaeI	CTAG	1 cut(s)	449
MaeII	ACGT	2 cut(s)	316, 575
MalI	GATC	4 cut(s)	150, 366, 408, 453
MboI	GATC	4 cut(s)	148, 364, 406, 451
MboII	GAAGA	4 cut(s)	233, 281, 335, 344
MflI	RGATCY	3 cut(s)	364, 406, 451
MhlI	GDGCHC	2 cut(s)	379, 586
MlsI	TGGCCA	1 cut(s)	395
MluCI	AATT	4 cut(s)	72, 127, 153, 294
MluNI	TGGCCA	1 cut(s)	395
MlyI	GAGTC	1 cut(s)	15
MmeI	TCCRAC	2 cut(s)	185, 444
MnlI	CCTC	7 cut(s)	153, 221, 355, 390, 424, 538, 587
Mox20I	TGGCCA	1 cut(s)	395
MroXI	GAANNNNTTC	1 cut(s)	348
MscI	TGGCCA	1 cut(s)	395
MseI	TTAA	4 cut(s)	174, 411, 456, 519
Msp20I	TGGCCA	1 cut(s)	395
MspR9I	CCNGG	2 cut(s)	224, 237
MvaI	CCWGG	2 cut(s)	224, 237
MwoI	GCNNNNNNNGC	1 cut(s)	497
NdeI	CATATG	1 cut(s)	502
NdeII	GATC	4 cut(s)	148, 364, 406, 451
NlaIII	CATG	3 cut(s)	59, 281, 484
NlaIV	GGNNCC	1 cut(s)	221
NspI	RCATGY	2 cut(s)	281, 484
PaeI	GCATGC	1 cut(s)	281
PciI	ACATGT	1 cut(s)	480
PdmI	GAANNNNTTC	1 cut(s)	348
PfeI	GAWTC	1 cut(s)	326
PleI	GAGTC	1 cut(s)	15
PpsI	GAGTC	1 cut(s)	15
PpuMI	RGGWCCY	1 cut(s)	220
PscI	ACATGT	1 cut(s)	480
Psp124BI	GAGCTC	2 cut(s)	379, 586
Psp1406I	AACGTT	1 cut(s)	575
Psp5II	RGGWCCY	1 cut(s)	220
Psp6I	CCWGG	2 cut(s)	222, 235
PspFI	CCCAGC	2 cut(s)	83, 598
PspGI	CCWGG	2 cut(s)	222, 235
PspN4I	GGNNCC	1 cut(s)	221
PspPI	GGNCC	2 cut(s)	220, 596
PspPPI	RGGWCCY	1 cut(s)	220
PstNI	CAGNNNCTG	1 cut(s)	605
PsuI	RGATCY	3 cut(s)	364, 406, 451
RsaI	GTAC	1 cut(s)	60
RsaNI	GTAC	1 cut(s)	59
SacI	GAGCTC	2 cut(s)	379, 586
SaqAI	TTAA	4 cut(s)	174, 411, 456, 519
Sau3AI	GATC	4 cut(s)	148, 364, 406, 451
Sau96I	GGNCC	2 cut(s)	220, 596
SchI	GAGTC	1 cut(s)	15
ScrFI	CCNGG	2 cut(s)	224, 237
SduI	GDGCHC	2 cut(s)	379, 586
SetI	ASST	9 cut(s)	139, 225, 232, 319, 379, 493, 549, 578, 586
SfaNI	GCATC	2 cut(s)	289, 406
SinI	GGWCC	1 cut(s)	220
SphI	GCATGC	1 cut(s)	281
Sse9I	AATT	4 cut(s)	72, 127, 153, 294
SspI	AATATT	2 cut(s)	178, 263
SspMI	CTAG	1 cut(s)	449
SstI	GAGCTC	2 cut(s)	379, 586
StyD4I	CCNGG	2 cut(s)	222, 235
TaaI	ACNGT	1 cut(s)	166
TaiI	ACGT	2 cut(s)	319, 578
TaqI	TCGA	3 cut(s)	151, 189, 442
TasI	AATT	4 cut(s)	72, 127, 153, 294
TatI	WGTACW	1 cut(s)	58
TfiI	GAWTC	1 cut(s)	326
Tru1I	TTAA	4 cut(s)	174, 411, 456, 519
Tru9I	TTAA	4 cut(s)	174, 411, 456, 519
TspDTI	ATGAA	3 cut(s)	44, 282, 483
VpaK11BI	GGWCC	1 cut(s)	220
XapI	RAATTY	1 cut(s)	127
XbaI	TCTAGA	1 cut(s)	448
XceI	RCATGY	2 cut(s)	281, 484
XmnI	GAANNNNTTC	1 cut(s)	348
XspI	CTAG	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.