Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0003451

Physical Location & Seq

Genomic Coordinates Reverse (-)

54260507 .. 54264666

Gene Structure 4160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG423400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGAGCAGGGAGGGGTCTCCGGATTGGCTGCGCACTTTTCAGGTCCCAAAAACTGAGTCAGTACTGTCATTGTCCTCAGATTCTGAGTCTTCATTGAATGGACTTAATTCGGGGGAGGATAACAGTGATGGCCGAGAACTATCTCCTCATAAATCATCTGGATTCGATGAAGATGATGATAATGAAGTTATCGGTAAATTTCTTGGGAAAAGTGTTGCAGGGTCTCCATCTGATAAGAGATTGAAAGGCAAGTCTCCGAAACGAGGGGAAAAAGTAGAAGAAGATATACCCCAGAAAAAGAAGAAGTCAGATGGATCCAAGAAGAGAGAAGGTAAAACAAGGACCGTTGTTGAGAAGCCTTCAAAGACTCATGAACCGAATGATTCAGTTTTGGGGTTGTCATCAGATTCTGATCCTGAAAACAGTCCTCCCAGAGAGGATGGTATCCACGATGGAGAATCTTCTGACCTTAAAACGTCTCAACTGCAATCAATAGGTAACAGTGAGGATGCAGCTCTTATGGGCAGTAGTGAAGAGTCTCCATCTAAACAGGCTACAAAAGGAAAATCTTTGAAGAAAGGTCCAAAAGGAAAAGGCCAGTCACCCAAGAAAGAGAAGAAAAAGATAGATAGCAAAGAAAAAGAAGGAATTTGTGGTGATGTGGAAGTGGCAGAGAAAGAAGCTTCTGACAAGCAGATTGAACCACGTGTATCCACCACAACATTGCCGTTGGTGCTTTCTGAGAAAGTCCATCGTACAAAGGCACTTGTTGAGTGTGAAAAGGACTCCATAGATTTGAGTGGTGATATGGGTGCTGTAGGACGGGTAGTAGTTTCAGATTCTAGATCTGGGCATAGCGAGATGTGCTTAGATTTAAAAGGAACCATTTACAAAACAACCATAGTTCCTTCCAGGACATTTTGTGTTGTTAGCTTTGGACCGTCCGAGGCAAAGATAGAAGCTATCATGAATGACTTCATTCAGCTGAAACCAGAAACATATGAAGCTGAAACAATGGTTGAAGGAACCCTAGAGGGTTTCTTATTTGATTCCGAAGATGAGGCTGACAAAGTTCCTAAAGCAACTCCTCATCAAACTGATAAAAATGAGGATACTGAAGAACAAACCAATGGGACAACCAAAGGGAAAGCTGACAAAGCATCGAGGGTTGTAAAGAAGAGAGATAAGCCTGCAGGAGGGAAGCCACAGCCACCAAAGAAAGCAAGAAAGAAAACTCAACTTTCCAAGAAGCCCAAGAACAAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008544 GO:0009058 GO:0009059 GO:0009330 GO:0009653 GO:0009888 GO:0009913 GO:0009987 GO:0010026 GO:0010090 GO:0016043 GO:0022402 GO:0022622 GO:0030154 GO:0030307 GO:0030855 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034641 GO:0034645 GO:0040008 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045927 GO:0046483 GO:0048364 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051128 GO:0051276 GO:0060429 GO:0065007 GO:0071704 GO:0071840 GO:0090304 GO:0090558 GO:0090626 GO:0097159 GO:0099402 GO:1901360 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

422

Amino Acids

45.83

Weight (kDa)

7.59

Isoelectric Point (pI)

49.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630
fragaria_vesca	FvH4_7g33320 FvH4_7g33320
malus_domestica	MD01G1231400.v1.1 MD07G1303400.v1.1
prunus_persica	Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1
pyrus_communis	pycom01g23940 pycom07g27630
rosa_chinensis	RchiOBHm_Chr1g0383301
rosa_laevigata	RLG00000026115
rosa_multiflora	Rmu_sc0007173.1_g000019 Rmu_sc0014196.1_g000003
rosa_roxburghii	Rroxscaffold_4G00277420
rosa_rugosa	Rorug01G0440400 Rorug01G0440400
rosa_samantha	Rh1AG466000 Rh1BG423400 Rh1CG436600 Rh1DG456100
rosa_wichuraiana	Rw1G040640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	32
AccIII	TCCGGA	1 cut(s)	19
AclWI	GGATC	3 cut(s)	309, 322, 407
AcoI	YGGCCR	1 cut(s)	130
AcsI	RAATTY	2 cut(s)	197, 648
AcuI	CTGAAG	1 cut(s)	1137
AcvI	CACGTG	1 cut(s)	707
AfaI	GTAC	2 cut(s)	63, 757
AfiI	CCNNNNNNNGG	2 cut(s)	263, 1196
AflIII	ACRYGT	1 cut(s)	706
AgsI	TTSAA	6 cut(s)	97, 244, 363, 574, 701, 1022
AjnI	CCWGG	1 cut(s)	911
AluBI	AGCT	7 cut(s)	515, 683, 933, 962, 985, 1007, 1151
AluI	AGCT	7 cut(s)	515, 683, 933, 962, 985, 1007, 1151
Alw26I	GTCTC	5 cut(s)	21, 228, 258, 483, 543
AlwI	GGATC	3 cut(s)	309, 322, 407
AlwNI	CAGNNNCTG	2 cut(s)	83, 410
Aor13HI	TCCGGA	1 cut(s)	19
AoxI	GGCC	2 cut(s)	130, 595
ApeKI	GCWGC	2 cut(s)	28, 512
ApoI	RAATTY	2 cut(s)	197, 648
ArsI	GACNNNNNNTTYG	2 cut(s)	41, 73
Asp700I	GAANNNNTTC	1 cut(s)	974
AspLEI	GCGC	1 cut(s)	33
AspS9I	GGNCC	4 cut(s)	43, 342, 581, 938
AsuHPI	GGTGA	3 cut(s)	594, 668, 815
AvaII	GGWCC	4 cut(s)	43, 342, 581, 938
BamHI	GGATCC	1 cut(s)	314
BarI	GAAGNNNNNNTAC	2 cut(s)	270, 302
BbrPI	CACGTG	1 cut(s)	707
BbsI	GAAGAC	1 cut(s)	81
BbvI	GCAGC	2 cut(s)	15, 524
BccI	CCATC	7 cut(s)	122, 235, 305, 434, 446, 550, 759
BceAI	ACGGC	1 cut(s)	712
BciT130I	CCWGG	1 cut(s)	913
BciVI	GTATCC	3 cut(s)	455, 721, 1105
BcoDI	GTCTC	5 cut(s)	21, 228, 258, 483, 543
BfaI	CTAG	2 cut(s)	843, 1031
BfmI	CTRYAG	2 cut(s)	816, 1191
BfuI	GTATCC	3 cut(s)	455, 721, 1105
BglII	AGATCT	1 cut(s)	845
BisI	GCNGC	2 cut(s)	29, 513
BlsI	GCNGC	2 cut(s)	30, 514
BmcAI	AGTACT	1 cut(s)	63
Bme1390I	CCNGG	1 cut(s)	913
Bme18I	GGWCC	4 cut(s)	43, 342, 581, 938
BmgT120I	GGNCC	4 cut(s)	43, 342, 581, 938
BmiI	GGNNCC	4 cut(s)	45, 316, 883, 1027
BmrFI	CCNGG	1 cut(s)	913
BmsI	GCATC	2 cut(s)	499, 1169
BpiI	GAAGAC	1 cut(s)	81
BsaAI	YACGTR	1 cut(s)	707
BsaBI	GATNNNNATC	1 cut(s)	411
BsaI	GGTCTC	2 cut(s)	21, 228
BsaJI	CCNNGG	1 cut(s)	945
BsaWI	WCCGGW	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	2 cut(s)	263, 1196
Bse1I	ACTGG	1 cut(s)	598
Bse3DI	GCAATG	1 cut(s)	722
Bse8I	GATNNNNATC	1 cut(s)	411
BseAI	TCCGGA	1 cut(s)	19
BseBI	CCWGG	1 cut(s)	913
BseDI	CCNNGG	1 cut(s)	945
BseGI	GGATG	2 cut(s)	445, 514
BseJI	GATNNNNATC	1 cut(s)	411
BseLI	CCNNNNNNNGG	2 cut(s)	263, 1196
BseMI	GCAATG	1 cut(s)	722
BseMII	CTCAG	4 cut(s)	45, 75, 90, 732
BseNI	ACTGG	1 cut(s)	598
BseRI	GAGGAG	2 cut(s)	135, 1077
BseXI	GCAGC	2 cut(s)	15, 524
BshFI	GGCC	2 cut(s)	132, 597
BsiSI	CCGG	1 cut(s)	20
BslFI	GGGAC	2 cut(s)	29, 1147
BslI	CCNNNNNNNGG	2 cut(s)	263, 1196
BsmAI	GTCTC	5 cut(s)	21, 228, 258, 483, 543
BsmBI	CGTCTC	1 cut(s)	483
BsmFI	GGGAC	2 cut(s)	29, 1147
BsnI	GGCC	2 cut(s)	132, 597
Bso31I	GGTCTC	2 cut(s)	21, 228
Bsp13I	TCCGGA	1 cut(s)	19
Bsp143I	GATC	3 cut(s)	314, 412, 845
BspANI	GGCC	2 cut(s)	132, 597
BspCNI	CTCAG	4 cut(s)	46, 76, 89, 733
BspEI	TCCGGA	1 cut(s)	19
BspHI	TCATGA	2 cut(s)	370, 966
BspLI	GGNNCC	4 cut(s)	45, 316, 883, 1027
BspMAI	CTGCAG	1 cut(s)	1195
BspPI	GGATC	3 cut(s)	309, 322, 407
BspTNI	GGTCTC	2 cut(s)	21, 228
BsrDI	GCAATG	1 cut(s)	722
BsrI	ACTGG	1 cut(s)	598
BssECI	CCNNGG	1 cut(s)	945
BssMI	GATC	3 cut(s)	314, 412, 845
Bst2UI	CCWGG	1 cut(s)	913
Bst4CI	ACNGT	6 cut(s)	66, 125, 346, 425, 503, 942
Bst6I	CTCTTC	3 cut(s)	317, 528, 1172
BstBAI	YACGTR	1 cut(s)	707
BstC8I	GCNNGC	1 cut(s)	1191
BstDEI	CTNAG	5 cut(s)	54, 76, 84, 741, 868
BstENI	CCTNNNNNAGG	1 cut(s)	1194
BstF5I	GGATG	2 cut(s)	445, 514
BstHHI	GCGC	1 cut(s)	33
BstKTI	GATC	3 cut(s)	317, 415, 848
BstMAI	GTCTC	5 cut(s)	21, 228, 258, 483, 543
BstMBI	GATC	3 cut(s)	314, 412, 845
BstMWI	GCNNNNNNNGC	3 cut(s)	733, 864, 1157
BstNI	CCWGG	1 cut(s)	913
BstSCI	CCNGG	1 cut(s)	911
BstSFI	CTRYAG	2 cut(s)	816, 1191
BstV1I	GCAGC	2 cut(s)	15, 524
BstV2I	GAAGAC	1 cut(s)	81
BstX2I	RGATCY	2 cut(s)	314, 845
BstYI	RGATCY	2 cut(s)	314, 845
BsuI	GTATCC	3 cut(s)	455, 721, 1105
BsuRI	GGCC	2 cut(s)	132, 597
BtsCI	GGATG	2 cut(s)	445, 514
BtsIMutI	CAGTG	2 cut(s)	130, 508
Cac8I	GCNNGC	1 cut(s)	1191
CaiI	CAGNNNCTG	2 cut(s)	83, 410
CciI	TCATGA	2 cut(s)	370, 966
CfoI	GCGC	1 cut(s)	33
Cfr13I	GGNCC	4 cut(s)	43, 342, 581, 938
Csp6I	GTAC	2 cut(s)	62, 756
CviAII	CATG	2 cut(s)	371, 967
CviQI	GTAC	2 cut(s)	62, 756
DdeI	CTNAG	5 cut(s)	54, 76, 84, 741, 868
DpnI	GATC	3 cut(s)	316, 414, 847
DpnII	GATC	3 cut(s)	314, 412, 845
DraI	TTTAAA	1 cut(s)	876
EaeI	YGGCCR	1 cut(s)	130
Eam1104I	CTCTTC	3 cut(s)	317, 528, 1172
EarI	CTCTTC	3 cut(s)	317, 528, 1172
Eco31I	GGTCTC	2 cut(s)	21, 228
Eco47I	GGWCC	4 cut(s)	43, 342, 581, 938
Eco57I	CTGAAG	1 cut(s)	1137
Eco72I	CACGTG	1 cut(s)	707
EcoNI	CCTNNNNNAGG	1 cut(s)	1194
EcoO109I	RGGNCCY	1 cut(s)	43
EcoRII	CCWGG	1 cut(s)	911
Esp3I	CGTCTC	1 cut(s)	483
FaeI	CATG	2 cut(s)	374, 970
FaqI	GGGAC	2 cut(s)	29, 1147
FatI	CATG	2 cut(s)	370, 966
FauNDI	CATATG	1 cut(s)	1000
Fnu4HI	GCNGC	2 cut(s)	29, 513
FokI	GGATG	2 cut(s)	452, 521
Fsp4HI	GCNGC	2 cut(s)	29, 513
FspBI	CTAG	2 cut(s)	843, 1031
FspI	TGCGCA	1 cut(s)	32
GlaI	GCGC	1 cut(s)	32
GluI	GCNGC	2 cut(s)	29, 513
HaeIII	GGCC	2 cut(s)	132, 597
HapII	CCGG	1 cut(s)	20
HhaI	GCGC	1 cut(s)	33
Hin1II	CATG	2 cut(s)	374, 970
Hin6I	GCGC	1 cut(s)	31
HinP1I	GCGC	1 cut(s)	31
HindIII	AAGCTT	1 cut(s)	681
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	3 cut(s)	594, 668, 815
Hpy188III	TCNNGA	6 cut(s)	20, 159, 371, 416, 843, 967
HpyAV	CCTTC	5 cut(s)	323, 369, 638, 918, 1016
HpyCH4III	ACNGT	6 cut(s)	66, 125, 346, 425, 503, 942
HpyCH4IV	ACGT	2 cut(s)	476, 706
HpyCH4V	TGCA	4 cut(s)	218, 487, 512, 1193
HpyF10VI	GCNNNNNNNGC	3 cut(s)	733, 864, 1157
HpyF3I	CTNAG	5 cut(s)	54, 76, 84, 741, 868
HpySE526I	ACGT	2 cut(s)	476, 706
Hsp92II	CATG	2 cut(s)	374, 970
HspAI	GCGC	1 cut(s)	31
Kpn2I	TCCGGA	1 cut(s)	19
Kzo9I	GATC	3 cut(s)	314, 412, 845
Lsp1109I	GCAGC	2 cut(s)	15, 524
LweI	GCATC	2 cut(s)	499, 1169
MaeI	CTAG	2 cut(s)	843, 1031
MaeII	ACGT	2 cut(s)	476, 706
MaeIII	GTNAC	2 cut(s)	497, 600
MalI	GATC	3 cut(s)	316, 414, 847
MboI	GATC	3 cut(s)	314, 412, 845
MflI	RGATCY	2 cut(s)	314, 845
MluCI	AATT	3 cut(s)	106, 197, 648
MlyI	GAGTC	5 cut(s)	65, 95, 361, 545, 779
MroI	TCCGGA	1 cut(s)	19
MroXI	GAANNNNTTC	1 cut(s)	974
MseI	TTAA	3 cut(s)	105, 471, 875
MspA1I	CMGCKG	1 cut(s)	985
MspI	CCGG	1 cut(s)	20
MspR9I	CCNGG	1 cut(s)	913
MvaI	CCWGG	1 cut(s)	913
MwoI	GCNNNNNNNGC	3 cut(s)	733, 864, 1157
NdeI	CATATG	1 cut(s)	1000
NdeII	GATC	3 cut(s)	314, 412, 845
NlaIII	CATG	2 cut(s)	374, 970
NlaIV	GGNNCC	4 cut(s)	45, 316, 883, 1027
NmeAIII	GCCGAG	1 cut(s)	158
NmuCI	GTSAC	1 cut(s)	600
NsbI	TGCGCA	1 cut(s)	32
PagI	TCATGA	2 cut(s)	370, 966
PdmI	GAANNNNTTC	1 cut(s)	974
PfeI	GAWTC	7 cut(s)	80, 162, 383, 407, 458, 839, 1049
PfoI	TCCNGGA	1 cut(s)	911
PkrI	GCNGC	2 cut(s)	30, 514
PleI	GAGTC	5 cut(s)	64, 94, 361, 544, 779
PmaCI	CACGTG	1 cut(s)	707
PmlI	CACGTG	1 cut(s)	707
PpsI	GAGTC	5 cut(s)	64, 94, 361, 544, 779
Ppu21I	YACGTR	1 cut(s)	707
PpuMI	RGGWCCY	1 cut(s)	43
Psp5II	RGGWCCY	1 cut(s)	43
Psp6I	CCWGG	1 cut(s)	911
PspCI	CACGTG	1 cut(s)	707
PspGI	CCWGG	1 cut(s)	911
PspN4I	GGNNCC	4 cut(s)	45, 316, 883, 1027
PspPI	GGNCC	4 cut(s)	43, 342, 581, 938
PspPPI	RGGWCCY	1 cut(s)	43
PstI	CTGCAG	1 cut(s)	1195
PstNI	CAGNNNCTG	2 cut(s)	83, 410
PsuI	RGATCY	2 cut(s)	314, 845
PvuII	CAGCTG	1 cut(s)	985
RsaI	GTAC	2 cut(s)	63, 757
RsaNI	GTAC	2 cut(s)	62, 756
SaqAI	TTAA	3 cut(s)	105, 471, 875
SatI	GCNGC	2 cut(s)	29, 513
Sau3AI	GATC	3 cut(s)	314, 412, 845
Sau96I	GGNCC	4 cut(s)	43, 342, 581, 938
SbfI	CCTGCAGG	1 cut(s)	1195
ScaI	AGTACT	1 cut(s)	63
SchI	GAGTC	5 cut(s)	65, 95, 361, 545, 779
ScrFI	CCNGG	1 cut(s)	913
SdaI	CCTGCAGG	1 cut(s)	1195
SfaNI	GCATC	2 cut(s)	499, 1169
SfcI	CTRYAG	2 cut(s)	816, 1191
SinI	GGWCC	4 cut(s)	43, 342, 581, 938
Sse8387I	CCTGCAGG	1 cut(s)	1195
Sse9I	AATT	3 cut(s)	106, 197, 648
SspMI	CTAG	2 cut(s)	843, 1031
StyD4I	CCNGG	1 cut(s)	911
TaaI	ACNGT	6 cut(s)	66, 125, 346, 425, 503, 942
TaiI	ACGT	2 cut(s)	479, 709
TaqI	TCGA	2 cut(s)	165, 1163
TasI	AATT	3 cut(s)	106, 197, 648
TatI	WGTACW	1 cut(s)	61
TfiI	GAWTC	7 cut(s)	80, 162, 383, 407, 458, 839, 1049
Tru1I	TTAA	3 cut(s)	105, 471, 875
Tru9I	TTAA	3 cut(s)	105, 471, 875
TscAI	CASTG	2 cut(s)	130, 508
TseFI	GTSAC	1 cut(s)	600
TseI	GCWGC	2 cut(s)	28, 512
Tsp45I	GTSAC	1 cut(s)	600
TspDTI	ATGAA	7 cut(s)	81, 183, 198, 387, 967, 983, 1017
TspRI	CASTG	2 cut(s)	130, 508
VpaK11BI	GGWCC	4 cut(s)	43, 342, 581, 938
XagI	CCTNNNNNAGG	1 cut(s)	1194
XapI	RAATTY	2 cut(s)	197, 648
XbaI	TCTAGA	1 cut(s)	842
XmnI	GAANNNNTTC	1 cut(s)	974
XspI	CTAG	2 cut(s)	843, 1031
ZrmI	AGTACT	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.