Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003451

Physical Location & Seq

Genomic Coordinates Reverse (-)

29904141 .. 29907522

Gene Structure 3382 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G322100.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGAGCACCTCGAGGGAGGAGTCTCCAGATTGGCTGCGCTCTTTCCAGGTACCACCAACTCATTCAACGGTGTCATTATCGTCAGATTCCGAGTCTTCACTGAATGGTGTTCCTTCAGGGGACGATCAATCTGATTGCCACGTATTGTCTCCACCTAAATCTTCTAAAATTCCCGATGAAGATGAGGGTTTAGATAAAACTCTTACGAAATCTGTTGCAGAGTCTCCATCAAAAAAGAGATTAAAAAGCAACTCTCCGAAACAAGGGAAAAACGTAGAAGATCAAATATCCCTGAAAAAGAAGAAAACAGACAAACCCAAGGAAGAAGGAAATTGTGGTGATGTGGAAGTTGCAGAGGAAGAAGCATCCGACAAGCCTGTTGAGCCTCATGTATCCTCGAAGTTGCCTTTGGTGCTCTCTGAAAAAGTCCAACGTTCAAAGGCACTTGTTGAGTGTGAAGGAAATTCAATAGATTTGAGCGGTGATATGGGTGCTGTAGGACGGGTAATAATTTCAGATTCTAAATCTGCAAATCGGGAAATGTACCTTGATTTGAAAGGTACCGTATACAAAACAACAATAGTTCCTTCCAGGACATTTTGTGTTGTTAGCTTTGGTCAATCAGAGGCAAAGATTGAAGCTATCATGAATGACTTTATTCAGCTGAAACCACAATCAAATGTTTATGAAGCTGAAACAATGGTTGAAGGAACCCTAGATGGTTTCTCATTTGATTCAGAAGATGAAACTGACAAACTTCCTAAAGCCATTCTGCATCAAACTAATCAAAACGAGGAGGATGTTGAAGAACAAACTAAGGGGAAAACCAAGGGGAAAGCTGAGAAAGCATTGACTGTTGTAAGGAAGAGGGGTAAAACTGCTGGAGGGAAGCCACAGCCAACGAAGAAAGCAAGAAAGAAAACTCAAGTTTCCAAGAAAGCCAAGAGCAAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008544 GO:0009058 GO:0009059 GO:0009330 GO:0009653 GO:0009888 GO:0009913 GO:0009987 GO:0010026 GO:0010090 GO:0016043 GO:0022402 GO:0022622 GO:0030154 GO:0030307 GO:0030855 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034641 GO:0034645 GO:0040008 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045927 GO:0046483 GO:0048364 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051128 GO:0051276 GO:0060429 GO:0065007 GO:0071704 GO:0071840 GO:0090304 GO:0090558 GO:0090626 GO:0097159 GO:0099402 GO:1901360 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

319

Amino Acids

34.76

Weight (kDa)

7.59

Isoelectric Point (pI)

49.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630
fragaria_vesca	FvH4_7g33320 FvH4_7g33320
malus_domestica	MD01G1231400.v1.1 MD07G1303400.v1.1
prunus_persica	Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1
pyrus_communis	pycom01g23940 pycom07g27630
rosa_chinensis	RchiOBHm_Chr1g0383301
rosa_laevigata	RLG00000026115
rosa_multiflora	Rmu_sc0007173.1_g000019 Rmu_sc0014196.1_g000003
rosa_roxburghii	Rroxscaffold_4G00277420
rosa_rugosa	Rorug01G0440400 Rorug01G0440400
rosa_samantha	Rh1AG466000 Rh1BG423400 Rh1CG436600 Rh1DG456100
rosa_wichuraiana	Rw1G040640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	10
Acc65I	GGTACC	2 cut(s)	49, 560
AccB1I	GGYRCC	2 cut(s)	49, 560
AccBSI	CCGCTC	1 cut(s)	480
AccI	GTMKAC	1 cut(s)	567
AciI	CCGC	1 cut(s)	480
AclI	AACGTT	1 cut(s)	433
AcsI	RAATTY	2 cut(s)	168, 463
AcuI	CTGAAG	1 cut(s)	99
AfaI	GTAC	3 cut(s)	51, 545, 562
AfiI	CCNNNNNNNGG	1 cut(s)	263
AgsI	TTSAA	7 cut(s)	66, 438, 468, 556, 638, 707, 806
AjnI	CCWGG	2 cut(s)	45, 590
AjuI	GAANNNNNNNTTGG	2 cut(s)	392, 424
AluBI	AGCT	5 cut(s)	612, 641, 664, 692, 839
AluI	AGCT	5 cut(s)	612, 641, 664, 692, 839
Alw21I	GWGCWC	2 cut(s)	8, 417
Alw26I	GTCTC	3 cut(s)	27, 153, 228
Ama87I	CYCGRG	1 cut(s)	10
ApeKI	GCWGC	1 cut(s)	34
ApoI	RAATTY	2 cut(s)	168, 463
Asp718I	GGTACC	2 cut(s)	49, 560
AspLEI	GCGC	1 cut(s)	39
AsuHPI	GGTGA	2 cut(s)	350, 494
AvaI	CYCGRG	1 cut(s)	10
BanI	GGYRCC	2 cut(s)	49, 560
BbsI	GAAGAC	1 cut(s)	87
Bbv12I	GWGCWC	2 cut(s)	8, 417
BbvI	GCAGC	1 cut(s)	21
BccI	CCATC	2 cut(s)	235, 713
BciT130I	CCWGG	2 cut(s)	47, 592
BciVI	GTATCC	1 cut(s)	403
BcoDI	GTCTC	3 cut(s)	27, 153, 228
BfaI	CTAG	1 cut(s)	716
BfmI	CTRYAG	1 cut(s)	495
BfuI	GTATCC	1 cut(s)	403
BisI	GCNGC	1 cut(s)	35
BlsI	GCNGC	1 cut(s)	36
Bme1390I	CCNGG	2 cut(s)	47, 592
BmeT110I	CYCGRG	1 cut(s)	10
BmiI	GGNNCC	3 cut(s)	51, 562, 712
BmrFI	CCNGG	2 cut(s)	47, 592
BmsI	GCATC	2 cut(s)	374, 784
BpiI	GAAGAC	1 cut(s)	87
BpmI	CTGGAG	2 cut(s)	9, 903
BpuEI	CTTGAG	1 cut(s)	909
BsaAI	YACGTR	1 cut(s)	142
BsaJI	CCNNGG	2 cut(s)	318, 828
Bsc4I	CCNNNNNNNGG	1 cut(s)	263
BseBI	CCWGG	2 cut(s)	47, 592
BseDI	CCNNGG	2 cut(s)	318, 828
BseGI	GGATG	2 cut(s)	365, 805
BseLI	CCNNNNNNNGG	1 cut(s)	263
BseMII	CTCAG	1 cut(s)	831
BseRI	GAGGAG	2 cut(s)	32, 809
BseXI	GCAGC	1 cut(s)	21
BshNI	GGYRCC	2 cut(s)	49, 560
BsiHKAI	GWGCWC	2 cut(s)	8, 417
BsiHKCI	CYCGRG	1 cut(s)	10
BslFI	GGGAC	1 cut(s)	134
BslI	CCNNNNNNNGG	1 cut(s)	263
BsmAI	GTCTC	3 cut(s)	27, 153, 228
BsmFI	GGGAC	1 cut(s)	134
BsoBI	CYCGRG	1 cut(s)	10
Bsp1286I	GDGCHC	2 cut(s)	8, 417
Bsp143I	GATC	2 cut(s)	124, 280
BspACI	CCGC	1 cut(s)	480
BspCNI	CTCAG	1 cut(s)	832
BspHI	TCATGA	1 cut(s)	645
BspLI	GGNNCC	3 cut(s)	51, 562, 712
BspT107I	GGYRCC	2 cut(s)	49, 560
BsrBI	CCGCTC	1 cut(s)	480
BssECI	CCNNGG	2 cut(s)	318, 828
BssMI	GATC	2 cut(s)	124, 280
BssNAI	GTATAC	1 cut(s)	568
BssT1I	CCWWGG	2 cut(s)	318, 828
Bst1107I	GTATAC	1 cut(s)	568
Bst2UI	CCWGG	2 cut(s)	47, 592
Bst4CI	ACNGT	3 cut(s)	70, 565, 856
Bst6I	CTCTTC	1 cut(s)	860
BstBAI	YACGTR	1 cut(s)	142
BstDEI	CTNAG	2 cut(s)	816, 840
BstF5I	GGATG	2 cut(s)	365, 805
BstHHI	GCGC	1 cut(s)	39
BstKTI	GATC	2 cut(s)	127, 283
BstMAI	GTCTC	3 cut(s)	27, 153, 228
BstMBI	GATC	2 cut(s)	124, 280
BstMWI	GCNNNNNNNGC	3 cut(s)	382, 412, 845
BstNI	CCWGG	2 cut(s)	47, 592
BstSCI	CCNGG	2 cut(s)	45, 590
BstSFI	CTRYAG	1 cut(s)	495
BstV1I	GCAGC	1 cut(s)	21
BstV2I	GAAGAC	1 cut(s)	87
BstZ17I	GTATAC	1 cut(s)	568
BsuI	GTATCC	1 cut(s)	403
BtsCI	GGATG	2 cut(s)	365, 805
BtsIMutI	CAGTG	1 cut(s)	98
CciI	TCATGA	1 cut(s)	645
CfoI	GCGC	1 cut(s)	39
Csp6I	GTAC	3 cut(s)	50, 544, 561
CviAII	CATG	2 cut(s)	389, 646
CviQI	GTAC	3 cut(s)	50, 544, 561
DdeI	CTNAG	2 cut(s)	816, 840
DpnI	GATC	2 cut(s)	126, 282
DpnII	GATC	2 cut(s)	124, 280
Eam1104I	CTCTTC	1 cut(s)	860
EarI	CTCTTC	1 cut(s)	860
Eco130I	CCWWGG	2 cut(s)	318, 828
Eco57I	CTGAAG	1 cut(s)	99
Eco88I	CYCGRG	1 cut(s)	10
EcoRII	CCWGG	2 cut(s)	45, 590
EcoT14I	CCWWGG	2 cut(s)	318, 828
ErhI	CCWWGG	2 cut(s)	318, 828
FaeI	CATG	2 cut(s)	392, 649
FaiI	YATR	5 cut(s)	390, 488, 568, 647, 687
FaqI	GGGAC	1 cut(s)	134
FatI	CATG	2 cut(s)	388, 645
FblI	GTMKAC	1 cut(s)	567
Fnu4HI	GCNGC	1 cut(s)	35
FokI	GGATG	2 cut(s)	352, 812
Fsp4HI	GCNGC	1 cut(s)	35
FspBI	CTAG	1 cut(s)	716
GlaI	GCGC	1 cut(s)	38
GluI	GCNGC	1 cut(s)	35
GsuI	CTGGAG	2 cut(s)	9, 903
HhaI	GCGC	1 cut(s)	39
Hin1II	CATG	2 cut(s)	392, 649
Hin6I	GCGC	1 cut(s)	37
HinP1I	GCGC	1 cut(s)	37
HinfI	GANTC	6 cut(s)	20, 86, 92, 221, 518, 734
HphI	GGTGA	2 cut(s)	350, 494
Hpy166II	GTNNAC	1 cut(s)	568
Hpy188I	TCNGA	9 cut(s)	85, 91, 133, 258, 370, 421, 517, 625, 739
Hpy188III	TCNNGA	4 cut(s)	26, 173, 536, 646
Hpy8I	GTNNAC	1 cut(s)	568
HpyAV	CCTTC	5 cut(s)	123, 320, 452, 597, 701
HpyCH4III	ACNGT	3 cut(s)	70, 565, 856
HpyCH4IV	ACGT	3 cut(s)	141, 273, 433
HpyCH4V	TGCA	4 cut(s)	218, 353, 530, 775
HpyF10VI	GCNNNNNNNGC	3 cut(s)	382, 412, 845
HpyF3I	CTNAG	2 cut(s)	816, 840
HpySE526I	ACGT	3 cut(s)	141, 273, 433
Hsp92II	CATG	2 cut(s)	392, 649
HspAI	GCGC	1 cut(s)	37
KpnI	GGTACC	2 cut(s)	53, 564
Kzo9I	GATC	2 cut(s)	124, 280
LpnPI	CCDG	9 cut(s)	32, 39, 59, 102, 305, 390, 577, 604, 867
Lsp1109I	GCAGC	1 cut(s)	21
LweI	GCATC	2 cut(s)	374, 784
MaeI	CTAG	1 cut(s)	716
MaeII	ACGT	3 cut(s)	141, 273, 433
MalI	GATC	2 cut(s)	126, 282
MbiI	CCGCTC	1 cut(s)	480
MboI	GATC	2 cut(s)	124, 280
MhlI	GDGCHC	2 cut(s)	8, 417
MluCI	AATT	4 cut(s)	168, 331, 463, 510
MlyI	GAGTC	3 cut(s)	29, 101, 230
MmeI	TCCRAC	2 cut(s)	393, 454
MseI	TTAA	1 cut(s)	242
MspA1I	CMGCKG	1 cut(s)	664
MspR9I	CCNGG	2 cut(s)	47, 592
MvaI	CCWGG	2 cut(s)	47, 592
MwoI	GCNNNNNNNGC	3 cut(s)	382, 412, 845
NdeII	GATC	2 cut(s)	124, 280
NlaIII	CATG	2 cut(s)	392, 649
NlaIV	GGNNCC	3 cut(s)	51, 562, 712
PaeR7I	CTCGAG	1 cut(s)	10
PagI	TCATGA	1 cut(s)	645
PfeI	GAWTC	3 cut(s)	86, 518, 734
PfoI	TCCNGGA	1 cut(s)	590
PkrI	GCNGC	1 cut(s)	36
PleI	GAGTC	3 cut(s)	28, 100, 229
PpsI	GAGTC	3 cut(s)	28, 100, 229
Ppu21I	YACGTR	1 cut(s)	142
Psp1406I	AACGTT	1 cut(s)	433
Psp6I	CCWGG	2 cut(s)	45, 590
PspGI	CCWGG	2 cut(s)	45, 590
PspN4I	GGNNCC	3 cut(s)	51, 562, 712
PspXI	VCTCGAGB	1 cut(s)	10
PvuII	CAGCTG	1 cut(s)	664
RsaI	GTAC	3 cut(s)	51, 545, 562
RsaNI	GTAC	3 cut(s)	50, 544, 561
SaqAI	TTAA	1 cut(s)	242
SatI	GCNGC	1 cut(s)	35
Sau3AI	GATC	2 cut(s)	124, 280
SchI	GAGTC	3 cut(s)	29, 101, 230
ScrFI	CCNGG	2 cut(s)	47, 592
SduI	GDGCHC	2 cut(s)	8, 417
SfaNI	GCATC	2 cut(s)	374, 784
SfcI	CTRYAG	1 cut(s)	495
Sfr274I	CTCGAG	1 cut(s)	10
SlaI	CTCGAG	1 cut(s)	10
SmlI	CTYRAG	2 cut(s)	10, 924
SmoI	CTYRAG	2 cut(s)	10, 924
Sse9I	AATT	4 cut(s)	168, 331, 463, 510
SsiI	CCGC	1 cut(s)	480
SspMI	CTAG	1 cut(s)	716
StyD4I	CCNGG	2 cut(s)	45, 590
StyI	CCWWGG	2 cut(s)	318, 828
TaaI	ACNGT	3 cut(s)	70, 565, 856
TaiI	ACGT	3 cut(s)	144, 276, 436
TaqI	TCGA	2 cut(s)	11, 398
TasI	AATT	4 cut(s)	168, 331, 463, 510
TfiI	GAWTC	3 cut(s)	86, 518, 734
Tru1I	TTAA	1 cut(s)	242
Tru9I	TTAA	1 cut(s)	242
TscAI	CASTG	1 cut(s)	105
TseI	GCWGC	1 cut(s)	34
TspDTI	ATGAA	4 cut(s)	192, 662, 702, 759
TspRI	CASTG	1 cut(s)	105
XapI	RAATTY	2 cut(s)	168, 463
XhoI	CTCGAG	1 cut(s)	10
XmiI	GTMKAC	1 cut(s)	567
XspI	CTAG	1 cut(s)	716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.