Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0003451

Physical Location & Seq

Genomic Coordinates Reverse (-)

32030430 .. 32033336

Gene Structure 2907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1231400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGAGCTCGTCGAGGGAGGAGTCGCCAGATTGGCTGCGCTCTTTCCAGGTACCGGAAACTCATTCATCGGTGGAATTATCCTCAGATTCCGAGGCTTCACTGAATGGCGTTCCTTCGGGGGAGGATAAAACTGATTCCCCAGAATTGTCTCCACATAAATCTTCTAAACTTTCTGATGAAGACGAGAATTCGGGTAAAGTTCTTGGGGAAAGTGCTGCAGAGTCTCCATCCGATAAGAAGTTAAAACGAAACTCTCCAAAACAAAGGAAAAAAGTAGAAGATCAGAAACCCCTGAAAAAGAAGAAACTTGAGATATCCAAGGAAGGAGAAGGAAACAGTGATGATGTGGAAGTTGCAGAGGAAGAAGCATCTGGCAAGCACATTGAGCCTCATGTCTCCACCTCAAGGTTGCCTTTGGTGCTCTCCGAAAAAGTCCAACGCTCAAAGGCACTTGTTGAGTGTGAAGGAGAATCCATAGATTTGAGTGGTGATATGGGTGCTGTAGGACGGGTAATTATTTCAGATTCCAAATCTGCGGATCCTGAAATGTACCTGGATTTGAAAGGAACCATATACAAAACAACAATAGTTCCTTCCAGGACATTTTGTGTTGTTAGCTTTGGTCAGTCGGAGGCAAAGATTGAAGCTATCATGAATGACTTCATTCAGCTGAAACCACAATCAAATGTTGATGAAGCTGAAACAATGGTTGAAGGAACCCTAGATGGTTTCTCGTTTGATTCAGAAGATGAGGGTGACAAACTTCCTAAAGCCACTCCTCAACAAGCTGATCAAAACGAGGATGCTGAAGAACAAACTAAGGGGGCAACCACTTCGAAGGCTAAGAAAGCATCGACTGTTGTAAGGAAGAGAGCTAAACCTGCCGGAGGGAAGCCACAACCAGCGAAGAAACCAAGAAAGAAACCTCAAGTTTCCAAGAAAGCTAAGGGGAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008544 GO:0009058 GO:0009059 GO:0009330 GO:0009653 GO:0009888 GO:0009913 GO:0009987 GO:0010026 GO:0010090 GO:0016043 GO:0022402 GO:0022622 GO:0030154 GO:0030307 GO:0030855 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034641 GO:0034645 GO:0040008 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045927 GO:0046483 GO:0048364 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051128 GO:0051276 GO:0060429 GO:0065007 GO:0071704 GO:0071840 GO:0090304 GO:0090558 GO:0090626 GO:0097159 GO:0099402 GO:1901360 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

320

Amino Acids

34.66

Weight (kDa)

5.69

Isoelectric Point (pI)

55.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630
fragaria_vesca	FvH4_7g33320 FvH4_7g33320
malus_domestica	MD01G1231400.v1.1 MD07G1303400.v1.1
prunus_persica	Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1
pyrus_communis	pycom01g23940 pycom07g27630
rosa_chinensis	RchiOBHm_Chr1g0383301
rosa_laevigata	RLG00000026115
rosa_multiflora	Rmu_sc0007173.1_g000019 Rmu_sc0014196.1_g000003
rosa_roxburghii	Rroxscaffold_4G00277420
rosa_rugosa	Rorug01G0440400 Rorug01G0440400
rosa_samantha	Rh1AG466000 Rh1BG423400 Rh1CG436600 Rh1DG456100
rosa_wichuraiana	Rw1G040640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	889
Acc65I	GGTACC	1 cut(s)	49
AccB1I	GGYRCC	1 cut(s)	49
AciI	CCGC	1 cut(s)	536
AclWI	GGATC	2 cut(s)	533, 546
AcsI	RAATTY	1 cut(s)	187
AcuI	CTGAAG	1 cut(s)	828
AfaI	GTAC	2 cut(s)	51, 551
AfiI	CCNNNNNNNGG	3 cut(s)	52, 405, 887
AgsI	TTSAA	3 cut(s)	562, 644, 713
AjnI	CCWGG	3 cut(s)	45, 552, 596
AluBI	AGCT	8 cut(s)	6, 618, 647, 670, 698, 788, 875, 944
AluI	AGCT	8 cut(s)	6, 618, 647, 670, 698, 788, 875, 944
Alw21I	GWGCWC	2 cut(s)	8, 423
Alw26I	GTCTC	3 cut(s)	153, 228, 400
AlwI	GGATC	2 cut(s)	533, 546
ApeKI	GCWGC	2 cut(s)	34, 215
ApoI	RAATTY	1 cut(s)	187
Asp700I	GAANNNNTTC	1 cut(s)	659
Asp718I	GGTACC	1 cut(s)	49
AspLEI	GCGC	1 cut(s)	39
AsuHPI	GGTGA	2 cut(s)	500, 767
AsuII	TTCGAA	1 cut(s)	836
BamHI	GGATCC	1 cut(s)	538
BanI	GGYRCC	1 cut(s)	49
BanII	GRGCYC	1 cut(s)	8
BbsI	GAAGAC	1 cut(s)	186
Bbv12I	GWGCWC	2 cut(s)	8, 423
BbvI	GCAGC	2 cut(s)	21, 202
BccI	CCATC	2 cut(s)	235, 719
BcgI	CGANNNNNNTGC	2 cut(s)	816, 850
BciT130I	CCWGG	3 cut(s)	47, 554, 598
BclI	TGATCA	1 cut(s)	790
BcoDI	GTCTC	3 cut(s)	153, 228, 400
BfaI	CTAG	1 cut(s)	722
BfmI	CTRYAG	2 cut(s)	216, 501
BfuAI	ACCTGC	1 cut(s)	889
BglI	GCCNNNNNGGC	1 cut(s)	31
BisI	GCNGC	2 cut(s)	35, 216
BlsI	GCNGC	2 cut(s)	36, 217
Bme1390I	CCNGG	3 cut(s)	47, 554, 598
BmiI	GGNNCC	4 cut(s)	51, 540, 568, 718
BmrFI	CCNGG	3 cut(s)	47, 554, 598
BmsI	GCATC	3 cut(s)	377, 793, 860
BpiI	GAAGAC	1 cut(s)	186
Bpu10I	CCTNAGC	1 cut(s)	945
Bpu14I	TTCGAA	1 cut(s)	836
BpuEI	CTTGAG	3 cut(s)	329, 388, 912
BsaJI	CCNNGG	2 cut(s)	90, 318
BsaWI	WCCGGW	1 cut(s)	52
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 405, 887
BseBI	CCWGG	3 cut(s)	47, 554, 598
BseDI	CCNNGG	2 cut(s)	90, 318
BseGI	GGATG	2 cut(s)	227, 808
BseLI	CCNNNNNNNGG	3 cut(s)	52, 405, 887
BseMII	CTCAG	1 cut(s)	96
BseRI	GAGGAG	2 cut(s)	32, 768
BseXI	GCAGC	2 cut(s)	21, 202
BshNI	GGYRCC	1 cut(s)	49
BsiHKAI	GWGCWC	2 cut(s)	8, 423
BsiSI	CCGG	2 cut(s)	53, 885
BslI	CCNNNNNNNGG	3 cut(s)	52, 405, 887
BsmAI	GTCTC	3 cut(s)	153, 228, 400
Bsp119I	TTCGAA	1 cut(s)	836
Bsp1286I	GDGCHC	2 cut(s)	8, 423
Bsp143I	GATC	3 cut(s)	280, 538, 790
BspACI	CCGC	1 cut(s)	536
BspCNI	CTCAG	1 cut(s)	95
BspHI	TCATGA	1 cut(s)	651
BspLI	GGNNCC	4 cut(s)	51, 540, 568, 718
BspMAI	CTGCAG	1 cut(s)	220
BspMI	ACCTGC	1 cut(s)	889
BspPI	GGATC	2 cut(s)	533, 546
BspT104I	TTCGAA	1 cut(s)	836
BspT107I	GGYRCC	1 cut(s)	49
BssECI	CCNNGG	2 cut(s)	90, 318
BssMI	GATC	3 cut(s)	280, 538, 790
BssT1I	CCWWGG	1 cut(s)	318
Bst2UI	CCWGG	3 cut(s)	47, 554, 598
Bst4CI	ACNGT	2 cut(s)	338, 859
Bst6I	CTCTTC	1 cut(s)	863
BstBI	TTCGAA	1 cut(s)	836
BstC8I	GCNNGC	1 cut(s)	377
BstDEI	CTNAG	4 cut(s)	82, 819, 843, 945
BstENI	CCTNNNNNAGG	1 cut(s)	885
BstF5I	GGATG	2 cut(s)	227, 808
BstHHI	GCGC	1 cut(s)	39
BstKTI	GATC	3 cut(s)	283, 541, 793
BstMAI	GTCTC	3 cut(s)	153, 228, 400
BstMBI	GATC	3 cut(s)	280, 538, 790
BstMWI	GCNNNNNNNGC	5 cut(s)	31, 385, 418, 848, 881
BstNI	CCWGG	3 cut(s)	47, 554, 598
BstSCI	CCNGG	3 cut(s)	45, 552, 596
BstSFI	CTRYAG	2 cut(s)	216, 501
BstV1I	GCAGC	2 cut(s)	21, 202
BstV2I	GAAGAC	1 cut(s)	186
BstX2I	RGATCY	1 cut(s)	538
BstYI	RGATCY	1 cut(s)	538
BtsCI	GGATG	2 cut(s)	227, 808
BtsIMutI	CAGTG	2 cut(s)	98, 343
BveI	ACCTGC	1 cut(s)	889
Cac8I	GCNNGC	1 cut(s)	377
CciI	TCATGA	1 cut(s)	651
CfoI	GCGC	1 cut(s)	39
Csp6I	GTAC	2 cut(s)	50, 550
CviAII	CATG	2 cut(s)	392, 652
CviQI	GTAC	2 cut(s)	50, 550
DdeI	CTNAG	4 cut(s)	82, 819, 843, 945
DpnI	GATC	3 cut(s)	282, 540, 792
DpnII	GATC	3 cut(s)	280, 538, 790
Eam1104I	CTCTTC	1 cut(s)	863
EarI	CTCTTC	1 cut(s)	863
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	318
Eco24I	GRGCYC	1 cut(s)	8
Eco32I	GATATC	1 cut(s)	315
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	828
EcoICRI	GAGCTC	1 cut(s)	6
EcoNI	CCTNNNNNAGG	1 cut(s)	885
EcoRI	GAATTC	1 cut(s)	187
EcoRII	CCWGG	3 cut(s)	45, 552, 596
EcoRV	GATATC	1 cut(s)	315
EcoT14I	CCWWGG	1 cut(s)	318
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	318
FaeI	CATG	2 cut(s)	395, 655
FaiI	YATR	7 cut(s)	156, 393, 476, 494, 572, 574, 653
FalI	AAGNNNNNCTT	2 cut(s)	397, 429
FatI	CATG	2 cut(s)	391, 651
FbaI	TGATCA	1 cut(s)	790
Fnu4HI	GCNGC	2 cut(s)	35, 216
FokI	GGATG	2 cut(s)	214, 815
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	2 cut(s)	35, 216
FspBI	CTAG	1 cut(s)	722
GlaI	GCGC	1 cut(s)	38
GluI	GCNGC	2 cut(s)	35, 216
HapII	CCGG	2 cut(s)	53, 885
HhaI	GCGC	1 cut(s)	39
Hin1II	CATG	2 cut(s)	395, 655
Hin6I	GCGC	1 cut(s)	37
HinP1I	GCGC	1 cut(s)	37
HinfI	GANTC	7 cut(s)	20, 86, 134, 221, 470, 524, 740
HpaII	CCGG	2 cut(s)	53, 885
HphI	GGTGA	2 cut(s)	500, 767
Hpy188I	TCNGA	9 cut(s)	85, 91, 175, 232, 285, 427, 523, 631, 745
Hpy188III	TCNNGA	2 cut(s)	542, 652
Hpy99I	CGWCG	1 cut(s)	13
HpyAV	CCTTC	7 cut(s)	123, 317, 323, 458, 603, 707, 832
HpyCH4III	ACNGT	2 cut(s)	338, 859
HpyCH4V	TGCA	2 cut(s)	218, 356
HpyF10VI	GCNNNNNNNGC	5 cut(s)	31, 385, 418, 848, 881
HpyF3I	CTNAG	4 cut(s)	82, 819, 843, 945
Hsp92II	CATG	2 cut(s)	395, 655
HspAI	GCGC	1 cut(s)	37
KpnI	GGTACC	1 cut(s)	53
Ksp22I	TGATCA	1 cut(s)	790
Kzo9I	GATC	3 cut(s)	280, 538, 790
Lsp1109I	GCAGC	2 cut(s)	21, 202
LweI	GCATC	3 cut(s)	377, 793, 860
MaeI	CTAG	1 cut(s)	722
MaeIII	GTNAC	1 cut(s)	755
MalI	GATC	3 cut(s)	282, 540, 792
MboI	GATC	3 cut(s)	280, 538, 790
MboII	GAAGA	9 cut(s)	153, 191, 290, 313, 374, 758, 821, 880, 919
MflI	RGATCY	1 cut(s)	538
MhlI	GDGCHC	2 cut(s)	8, 423
MluCI	AATT	4 cut(s)	74, 143, 187, 513
MlyI	GAGTC	2 cut(s)	29, 230
MmeI	TCCRAC	2 cut(s)	460, 609
MroXI	GAANNNNTTC	1 cut(s)	659
MseI	TTAA	1 cut(s)	242
MspA1I	CMGCKG	1 cut(s)	670
MspI	CCGG	2 cut(s)	53, 885
MspR9I	CCNGG	3 cut(s)	47, 554, 598
MvaI	CCWGG	3 cut(s)	47, 554, 598
MwoI	GCNNNNNNNGC	5 cut(s)	31, 385, 418, 848, 881
NdeII	GATC	3 cut(s)	280, 538, 790
NlaIII	CATG	2 cut(s)	395, 655
NlaIV	GGNNCC	4 cut(s)	51, 540, 568, 718
NmuCI	GTSAC	1 cut(s)	755
NspV	TTCGAA	1 cut(s)	836
PagI	TCATGA	1 cut(s)	651
PdmI	GAANNNNTTC	1 cut(s)	659
PfeI	GAWTC	5 cut(s)	86, 134, 470, 524, 740
PfoI	TCCNGGA	1 cut(s)	596
PkrI	GCNGC	2 cut(s)	36, 217
PleI	GAGTC	2 cut(s)	28, 229
PpsI	GAGTC	2 cut(s)	28, 229
Psp124BI	GAGCTC	1 cut(s)	8
Psp6I	CCWGG	3 cut(s)	45, 552, 596
PspGI	CCWGG	3 cut(s)	45, 552, 596
PspN4I	GGNNCC	4 cut(s)	51, 540, 568, 718
PstI	CTGCAG	1 cut(s)	220
PsuI	RGATCY	1 cut(s)	538
PvuII	CAGCTG	1 cut(s)	670
RsaI	GTAC	2 cut(s)	51, 551
RsaNI	GTAC	2 cut(s)	50, 550
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	1 cut(s)	242
SatI	GCNGC	2 cut(s)	35, 216
Sau3AI	GATC	3 cut(s)	280, 538, 790
SchI	GAGTC	2 cut(s)	29, 230
ScrFI	CCNGG	3 cut(s)	47, 554, 598
SduI	GDGCHC	2 cut(s)	8, 423
SfaNI	GCATC	3 cut(s)	377, 793, 860
SfcI	CTRYAG	2 cut(s)	216, 501
SfuI	TTCGAA	1 cut(s)	836
SmlI	CTYRAG	3 cut(s)	308, 403, 927
SmoI	CTYRAG	3 cut(s)	308, 403, 927
Sse9I	AATT	4 cut(s)	74, 143, 187, 513
SsiI	CCGC	1 cut(s)	536
SspMI	CTAG	1 cut(s)	722
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	3 cut(s)	45, 552, 596
StyI	CCWWGG	1 cut(s)	318
TaaI	ACNGT	2 cut(s)	338, 859
TaqI	TCGA	3 cut(s)	11, 836, 854
TasI	AATT	4 cut(s)	74, 143, 187, 513
TfiI	GAWTC	5 cut(s)	86, 134, 470, 524, 740
Tru1I	TTAA	1 cut(s)	242
Tru9I	TTAA	1 cut(s)	242
TscAI	CASTG	2 cut(s)	105, 343
TseFI	GTSAC	1 cut(s)	755
TseI	GCWGC	2 cut(s)	34, 215
Tsp45I	GTSAC	1 cut(s)	755
TspDTI	ATGAA	5 cut(s)	54, 192, 652, 668, 708
TspRI	CASTG	2 cut(s)	105, 343
XagI	CCTNNNNNAGG	1 cut(s)	885
XapI	RAATTY	1 cut(s)	187
XmnI	GAANNNNTTC	1 cut(s)	659
XspI	CTAG	1 cut(s)	722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.