Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0003451

Physical Location & Seq

Genomic Coordinates Reverse (-)

66168479 .. 66172638

Gene Structure 4160 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG456100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGAGCAGGGAGGGGTCTCCGGATTGGCTGCGCACTTTTCAGGTCCCAAAAACTGAGTCAGTACTGTCATTGTCCTCAGATTCTGAGTCTTCATTGAATGGACTTAATTCGGGGGAGGATAACAGTGATGGCCGAGAACTATCTCCTCATAAATCATCTGGATTCGATGAAGATGATGATAATGAAGTTATCGGTAAATTTCTTGGGAAAAGTGTTGCAGGGTCTCCATCTGATAAGAGATTGAAAGGCAAGTCTCCGAAACGAGGGGAAAAAGTAGAAGAAGATATACCCCAGAAAAAGAAGAAGTCAGATGGATCCAAGAAGAGAGAAGGTAAAACAAGGACCGTTGTTGAGAAGCCTTCAAAGACTCATGAACCGAATGATTCAGTTTTGGGGTTGTCATCAGATTCTGATCCTGAAAACAGTCCTCCCAGAGAGGATGGTATCCACGATGGAGAATCTTCTGACCTTAAAACGTCTCAACTGCAATCAATAGGTAACAGTGAGGATGCAGCTCTTATGGGCAGTAGTGAAGAGTCTCCATCTAAACAGGCTACAAAAGGAAAATCTTTGAAGAAAGGTCCAAAAGGAAAAGGCCAGTCACCCAAGAAAGAGAAGAAAAAGATAGATAGCAAAGAAAAAGAAGGAATTTGTGGTGATGTGGAAGTGGCAGAGAAAGAAGCTTCTGACAAGCAGATTGAACCACGTGTATCCACCACAACATTGCCGTTGGTGCTTTCTGAGAAAGTCCATCGTACAAAGGCACTTGTTGAGTGTGAAAAGGACTCCATAGATTTGAGTGGTGATATGGGTGCTGTAGGACGGGTAGTAGTTTCAGATTCTAGATCTGGGCATAGCGAGATGTGCTTAGATTTAAAAGGTACGCTTTGTTCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008544 GO:0009058 GO:0009059 GO:0009330 GO:0009653 GO:0009888 GO:0009913 GO:0009987 GO:0010026 GO:0010090 GO:0016043 GO:0022402 GO:0022622 GO:0030154 GO:0030307 GO:0030855 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034641 GO:0034645 GO:0040008 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045927 GO:0046483 GO:0048364 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051128 GO:0051276 GO:0060429 GO:0065007 GO:0071704 GO:0071840 GO:0090304 GO:0090558 GO:0090626 GO:0097159 GO:0099402 GO:1901360 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

299

Amino Acids

32.11

Weight (kDa)

5.76

Isoelectric Point (pI)

56.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630
fragaria_vesca	FvH4_7g33320 FvH4_7g33320
malus_domestica	MD01G1231400.v1.1 MD07G1303400.v1.1
prunus_persica	Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1
pyrus_communis	pycom01g23940 pycom07g27630
rosa_chinensis	RchiOBHm_Chr1g0383301
rosa_laevigata	RLG00000026115
rosa_multiflora	Rmu_sc0007173.1_g000019 Rmu_sc0014196.1_g000003
rosa_roxburghii	Rroxscaffold_4G00277420
rosa_rugosa	Rorug01G0440400 Rorug01G0440400
rosa_samantha	Rh1AG466000 Rh1BG423400 Rh1CG436600 Rh1DG456100
rosa_wichuraiana	Rw1G040640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	32
AccIII	TCCGGA	1 cut(s)	19
AclWI	GGATC	3 cut(s)	309, 322, 407
AcoI	YGGCCR	1 cut(s)	130
AcsI	RAATTY	2 cut(s)	197, 648
AcvI	CACGTG	1 cut(s)	707
AfaI	GTAC	3 cut(s)	63, 757, 883
AfiI	CCNNNNNNNGG	1 cut(s)	263
AflIII	ACRYGT	1 cut(s)	706
AgsI	TTSAA	6 cut(s)	97, 244, 363, 574, 701, 894
AluBI	AGCT	2 cut(s)	515, 683
AluI	AGCT	2 cut(s)	515, 683
Alw26I	GTCTC	5 cut(s)	21, 228, 258, 483, 543
AlwI	GGATC	3 cut(s)	309, 322, 407
AlwNI	CAGNNNCTG	2 cut(s)	83, 410
Aor13HI	TCCGGA	1 cut(s)	19
AoxI	GGCC	2 cut(s)	130, 595
ApeKI	GCWGC	2 cut(s)	28, 512
ApoI	RAATTY	2 cut(s)	197, 648
ArsI	GACNNNNNNTTYG	2 cut(s)	41, 73
AspLEI	GCGC	1 cut(s)	33
AspS9I	GGNCC	3 cut(s)	43, 342, 581
AsuHPI	GGTGA	3 cut(s)	594, 668, 815
AvaII	GGWCC	3 cut(s)	43, 342, 581
BamHI	GGATCC	1 cut(s)	314
BarI	GAAGNNNNNNTAC	2 cut(s)	270, 302
BbrPI	CACGTG	1 cut(s)	707
BbsI	GAAGAC	1 cut(s)	81
BbvI	GCAGC	2 cut(s)	15, 524
BccI	CCATC	7 cut(s)	122, 235, 305, 434, 446, 550, 759
BceAI	ACGGC	1 cut(s)	712
BciVI	GTATCC	2 cut(s)	455, 721
BcoDI	GTCTC	5 cut(s)	21, 228, 258, 483, 543
BfaI	CTAG	1 cut(s)	843
BfmI	CTRYAG	1 cut(s)	816
BfuI	GTATCC	2 cut(s)	455, 721
BglII	AGATCT	1 cut(s)	845
BisI	GCNGC	2 cut(s)	29, 513
BlsI	GCNGC	2 cut(s)	30, 514
BmcAI	AGTACT	1 cut(s)	63
Bme18I	GGWCC	3 cut(s)	43, 342, 581
BmgT120I	GGNCC	3 cut(s)	43, 342, 581
BmiI	GGNNCC	2 cut(s)	45, 316
BmsI	GCATC	1 cut(s)	499
BpiI	GAAGAC	1 cut(s)	81
BsaAI	YACGTR	1 cut(s)	707
BsaBI	GATNNNNATC	1 cut(s)	411
BsaI	GGTCTC	2 cut(s)	21, 228
BsaWI	WCCGGW	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	1 cut(s)	263
Bse1I	ACTGG	1 cut(s)	598
Bse3DI	GCAATG	1 cut(s)	722
Bse8I	GATNNNNATC	1 cut(s)	411
BseAI	TCCGGA	1 cut(s)	19
BseGI	GGATG	2 cut(s)	445, 514
BseJI	GATNNNNATC	1 cut(s)	411
BseLI	CCNNNNNNNGG	1 cut(s)	263
BseMI	GCAATG	1 cut(s)	722
BseMII	CTCAG	4 cut(s)	45, 75, 90, 732
BseNI	ACTGG	1 cut(s)	598
BseRI	GAGGAG	1 cut(s)	135
BseXI	GCAGC	2 cut(s)	15, 524
BshFI	GGCC	2 cut(s)	132, 597
BsiSI	CCGG	1 cut(s)	20
BslFI	GGGAC	1 cut(s)	29
BslI	CCNNNNNNNGG	1 cut(s)	263
BsmAI	GTCTC	5 cut(s)	21, 228, 258, 483, 543
BsmBI	CGTCTC	1 cut(s)	483
BsmFI	GGGAC	1 cut(s)	29
BsnI	GGCC	2 cut(s)	132, 597
Bso31I	GGTCTC	2 cut(s)	21, 228
Bsp13I	TCCGGA	1 cut(s)	19
Bsp143I	GATC	3 cut(s)	314, 412, 845
BspANI	GGCC	2 cut(s)	132, 597
BspCNI	CTCAG	4 cut(s)	46, 76, 89, 733
BspEI	TCCGGA	1 cut(s)	19
BspHI	TCATGA	1 cut(s)	370
BspLI	GGNNCC	2 cut(s)	45, 316
BspPI	GGATC	3 cut(s)	309, 322, 407
BspTNI	GGTCTC	2 cut(s)	21, 228
BsrDI	GCAATG	1 cut(s)	722
BsrI	ACTGG	1 cut(s)	598
BssMI	GATC	3 cut(s)	314, 412, 845
Bst4CI	ACNGT	5 cut(s)	66, 125, 346, 425, 503
Bst6I	CTCTTC	2 cut(s)	317, 528
BstBAI	YACGTR	1 cut(s)	707
BstDEI	CTNAG	5 cut(s)	54, 76, 84, 741, 868
BstF5I	GGATG	2 cut(s)	445, 514
BstHHI	GCGC	1 cut(s)	33
BstKTI	GATC	3 cut(s)	317, 415, 848
BstMAI	GTCTC	5 cut(s)	21, 228, 258, 483, 543
BstMBI	GATC	3 cut(s)	314, 412, 845
BstMWI	GCNNNNNNNGC	2 cut(s)	733, 864
BstSFI	CTRYAG	1 cut(s)	816
BstV1I	GCAGC	2 cut(s)	15, 524
BstV2I	GAAGAC	1 cut(s)	81
BstX2I	RGATCY	2 cut(s)	314, 845
BstYI	RGATCY	2 cut(s)	314, 845
BsuI	GTATCC	2 cut(s)	455, 721
BsuRI	GGCC	2 cut(s)	132, 597
BtsCI	GGATG	2 cut(s)	445, 514
BtsIMutI	CAGTG	2 cut(s)	130, 508
CaiI	CAGNNNCTG	2 cut(s)	83, 410
CciI	TCATGA	1 cut(s)	370
CfoI	GCGC	1 cut(s)	33
Cfr13I	GGNCC	3 cut(s)	43, 342, 581
Csp6I	GTAC	3 cut(s)	62, 756, 882
CviAII	CATG	1 cut(s)	371
CviJI	RGCY	7 cut(s)	28, 132, 358, 515, 554, 597, 683
CviKI_1	RGCY	7 cut(s)	28, 132, 358, 515, 554, 597, 683
CviQI	GTAC	3 cut(s)	62, 756, 882
DdeI	CTNAG	5 cut(s)	54, 76, 84, 741, 868
DpnI	GATC	3 cut(s)	316, 414, 847
DpnII	GATC	3 cut(s)	314, 412, 845
DraI	TTTAAA	1 cut(s)	876
EaeI	YGGCCR	1 cut(s)	130
Eam1104I	CTCTTC	2 cut(s)	317, 528
EarI	CTCTTC	2 cut(s)	317, 528
Eco31I	GGTCTC	2 cut(s)	21, 228
Eco47I	GGWCC	3 cut(s)	43, 342, 581
Eco72I	CACGTG	1 cut(s)	707
EcoO109I	RGGNCCY	1 cut(s)	43
Esp3I	CGTCTC	1 cut(s)	483
FaeI	CATG	1 cut(s)	374
FaiI	YATR	7 cut(s)	150, 287, 372, 521, 791, 809, 855
FalI	AAGNNNNNCTT	1 cut(s)	870
FaqI	GGGAC	1 cut(s)	29
FatI	CATG	1 cut(s)	370
Fnu4HI	GCNGC	2 cut(s)	29, 513
FokI	GGATG	2 cut(s)	452, 521
Fsp4HI	GCNGC	2 cut(s)	29, 513
FspBI	CTAG	1 cut(s)	843
FspI	TGCGCA	1 cut(s)	32
GlaI	GCGC	1 cut(s)	32
GluI	GCNGC	2 cut(s)	29, 513
HaeIII	GGCC	2 cut(s)	132, 597
HapII	CCGG	1 cut(s)	20
HhaI	GCGC	1 cut(s)	33
Hin1II	CATG	1 cut(s)	374
Hin6I	GCGC	1 cut(s)	31
HinP1I	GCGC	1 cut(s)	31
HindIII	AAGCTT	1 cut(s)	681
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	3 cut(s)	594, 668, 815
Hpy188III	TCNNGA	5 cut(s)	20, 159, 371, 416, 843
HpyAV	CCTTC	3 cut(s)	323, 369, 638
HpyCH4III	ACNGT	5 cut(s)	66, 125, 346, 425, 503
HpyCH4IV	ACGT	2 cut(s)	476, 706
HpyCH4V	TGCA	3 cut(s)	218, 487, 512
HpyF10VI	GCNNNNNNNGC	2 cut(s)	733, 864
HpyF3I	CTNAG	5 cut(s)	54, 76, 84, 741, 868
HpySE526I	ACGT	2 cut(s)	476, 706
Hsp92II	CATG	1 cut(s)	374
HspAI	GCGC	1 cut(s)	31
Kpn2I	TCCGGA	1 cut(s)	19
Kzo9I	GATC	3 cut(s)	314, 412, 845
Lsp1109I	GCAGC	2 cut(s)	15, 524
LweI	GCATC	1 cut(s)	499
MaeI	CTAG	1 cut(s)	843
MaeII	ACGT	2 cut(s)	476, 706
MaeIII	GTNAC	2 cut(s)	497, 600
MalI	GATC	3 cut(s)	316, 414, 847
MboI	GATC	3 cut(s)	314, 412, 845
MflI	RGATCY	2 cut(s)	314, 845
MluCI	AATT	4 cut(s)	106, 197, 648, 895
MlyI	GAGTC	5 cut(s)	65, 95, 361, 545, 779
MnlI	CCTC	8 cut(s)	4, 85, 109, 156, 257, 430, 438, 499
MroI	TCCGGA	1 cut(s)	19
MseI	TTAA	4 cut(s)	105, 471, 875, 898
MspI	CCGG	1 cut(s)	20
MwoI	GCNNNNNNNGC	2 cut(s)	733, 864
NdeII	GATC	3 cut(s)	314, 412, 845
NlaIII	CATG	1 cut(s)	374
NlaIV	GGNNCC	2 cut(s)	45, 316
NmeAIII	GCCGAG	1 cut(s)	158
NmuCI	GTSAC	1 cut(s)	600
NsbI	TGCGCA	1 cut(s)	32
PagI	TCATGA	1 cut(s)	370
PfeI	GAWTC	6 cut(s)	80, 162, 383, 407, 458, 839
PkrI	GCNGC	2 cut(s)	30, 514
PleI	GAGTC	5 cut(s)	64, 94, 361, 544, 779
PmaCI	CACGTG	1 cut(s)	707
PmlI	CACGTG	1 cut(s)	707
PpsI	GAGTC	5 cut(s)	64, 94, 361, 544, 779
Ppu21I	YACGTR	1 cut(s)	707
PpuMI	RGGWCCY	1 cut(s)	43
Psp5II	RGGWCCY	1 cut(s)	43
PspCI	CACGTG	1 cut(s)	707
PspN4I	GGNNCC	2 cut(s)	45, 316
PspPI	GGNCC	3 cut(s)	43, 342, 581
PspPPI	RGGWCCY	1 cut(s)	43
PsrI	GAACNNNNNNTAC	1 cut(s)	874
PstNI	CAGNNNCTG	2 cut(s)	83, 410
PsuI	RGATCY	2 cut(s)	314, 845
RsaI	GTAC	3 cut(s)	63, 757, 883
RsaNI	GTAC	3 cut(s)	62, 756, 882
SaqAI	TTAA	4 cut(s)	105, 471, 875, 898
SatI	GCNGC	2 cut(s)	29, 513
Sau3AI	GATC	3 cut(s)	314, 412, 845
Sau96I	GGNCC	3 cut(s)	43, 342, 581
ScaI	AGTACT	1 cut(s)	63
SchI	GAGTC	5 cut(s)	65, 95, 361, 545, 779
SfaNI	GCATC	1 cut(s)	499
SfcI	CTRYAG	1 cut(s)	816
SinI	GGWCC	3 cut(s)	43, 342, 581
Sse9I	AATT	4 cut(s)	106, 197, 648, 895
SspMI	CTAG	1 cut(s)	843
TaaI	ACNGT	5 cut(s)	66, 125, 346, 425, 503
TaiI	ACGT	2 cut(s)	479, 709
TaqI	TCGA	1 cut(s)	165
TasI	AATT	4 cut(s)	106, 197, 648, 895
TatI	WGTACW	1 cut(s)	61
TfiI	GAWTC	6 cut(s)	80, 162, 383, 407, 458, 839
Tru1I	TTAA	4 cut(s)	105, 471, 875, 898
Tru9I	TTAA	4 cut(s)	105, 471, 875, 898
TscAI	CASTG	2 cut(s)	130, 508
TseFI	GTSAC	1 cut(s)	600
TseI	GCWGC	2 cut(s)	28, 512
Tsp45I	GTSAC	1 cut(s)	600
TspDTI	ATGAA	4 cut(s)	81, 183, 198, 387
TspRI	CASTG	2 cut(s)	130, 508
VpaK11BI	GGWCC	3 cut(s)	43, 342, 581
XapI	RAATTY	2 cut(s)	197, 648
XbaI	TCTAGA	1 cut(s)	842
XspI	CTAG	1 cut(s)	843
ZrmI	AGTACT	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.