Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0003451

Physical Location & Seq

Genomic Coordinates Reverse (-)

21060082 .. 21062146

Gene Structure 2065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g23940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGAGCACGTCGAGGGAGGAGTCGCCAGATTGGCTGCGGTCTTTCCAGGTACCGGAAACTCTTTCATCGGTGGAATTATCCTCAGATTCCGAGGCTTCACTGAATGGCGTTCCTTCGGGGGAGGATAAAACTGATTCCGCAGAATTGTCTCCACACAAATCTTCTAAACTTTCTGATGAAGATGAGAATTCCGGTAAAGTTCTTGGGGAAAGTGCTGCAGAGTCTCCATCCGATAAGAAGTTAAAACGAAACTCTCCAAAACAAAGGAAAAAAGTAGAAGATCAGAAACCCCTGAAAAAGAAGAAACTTGAGATATCCAAGGAAAGAGAAGGAAACAGTGATGATGTGGAAGTTGCAGAGGCAGAAGTTGCAGAGGAAGAAGCATCTGGCAAGCACATTGAGCCTCATGTCTCCACCTCAAGGTTGCCCTTGGTGCTCTCTGAAAAAGTCCAACGCTCAAAGGCACTTGTTGAGTGTGAAGGAGAATCCATAGATTTGAGTGGTGATATGGGTGCTGTAGGACGGGTAATTATTTCAGATTCCAAATCTGCAGATCCTGAAATGTACCTTGATTTGAAAGGAACCATATACAAAACAACAATAGTTCCTTCCAGGACATTTTGTGTTGTTAGCTTTGGTCAGTCGGAGGCAAAGATTGAAGCTATCATGAATGACTTCATTCAGCTGAAACCACAATCAAATGTTGATGAAGCTGAAACAATGGTTCAAGGAACCCTAGATGGATTCTCGTTTGATTCAGAAGATGAGGGTGACAAACTTCCTAAAGCCACTTCTCAACAAGCTGATCAAAACGAGGATGCTGAAGAACAAACTAAGGGGGCAACCATGGCGAAGGCTAAGAAAGCATCGACTGTTGTAAGGAAGAGAGCTAAACCTGCCGGAGGGAAGCCACAACCAGCAAAGAAACCAAGAAAGAAACCTCAAGTTTCCAAGAAGGCCAAGGGCAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008544 GO:0009058 GO:0009059 GO:0009330 GO:0009653 GO:0009888 GO:0009913 GO:0009987 GO:0010026 GO:0010090 GO:0016043 GO:0022402 GO:0022622 GO:0030154 GO:0030307 GO:0030855 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034641 GO:0034645 GO:0040008 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045927 GO:0046483 GO:0048364 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051128 GO:0051276 GO:0060429 GO:0065007 GO:0071704 GO:0071840 GO:0090304 GO:0090558 GO:0090626 GO:0097159 GO:0099402 GO:1901360 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

325

Amino Acids

35.22

Weight (kDa)

5.61

Isoelectric Point (pI)

52.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630
fragaria_vesca	FvH4_7g33320 FvH4_7g33320
malus_domestica	MD01G1231400.v1.1 MD07G1303400.v1.1
prunus_persica	Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1
pyrus_communis	pycom01g23940 pycom07g27630
rosa_chinensis	RchiOBHm_Chr1g0383301
rosa_laevigata	RLG00000026115
rosa_multiflora	Rmu_sc0007173.1_g000019 Rmu_sc0014196.1_g000003
rosa_roxburghii	Rroxscaffold_4G00277420
rosa_rugosa	Rorug01G0440400 Rorug01G0440400
rosa_samantha	Rh1AG466000 Rh1BG423400 Rh1CG436600 Rh1DG456100
rosa_wichuraiana	Rw1G040640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	904
Acc65I	GGTACC	1 cut(s)	49
AccB1I	GGYRCC	1 cut(s)	49
AciI	CCGC	2 cut(s)	37, 138
AclWI	GGATC	1 cut(s)	548
AcsI	RAATTY	1 cut(s)	187
AcuI	CTGAAG	1 cut(s)	843
AfaI	GTAC	2 cut(s)	51, 566
AfiI	CCNNNNNNNGG	3 cut(s)	52, 420, 902
AgsI	TTSAA	3 cut(s)	577, 659, 728
AjiI	CACGTC	1 cut(s)	9
AjnI	CCWGG	2 cut(s)	45, 611
AluBI	AGCT	6 cut(s)	633, 662, 685, 713, 803, 890
AluI	AGCT	6 cut(s)	633, 662, 685, 713, 803, 890
Alw21I	GWGCWC	2 cut(s)	8, 438
Alw26I	GTCTC	3 cut(s)	153, 228, 415
AlwI	GGATC	1 cut(s)	548
AlwNI	CAGNNNCTG	1 cut(s)	557
AoxI	GGCC	1 cut(s)	957
ApeKI	GCWGC	2 cut(s)	34, 215
ApoI	RAATTY	1 cut(s)	187
Asp700I	GAANNNNTTC	1 cut(s)	674
Asp718I	GGTACC	1 cut(s)	49
AsuHPI	GGTGA	2 cut(s)	515, 782
BanI	GGYRCC	1 cut(s)	49
Bbv12I	GWGCWC	2 cut(s)	8, 438
BbvI	GCAGC	2 cut(s)	21, 202
BccI	CCATC	2 cut(s)	235, 734
BciT130I	CCWGG	2 cut(s)	47, 613
BclI	TGATCA	1 cut(s)	805
BcoDI	GTCTC	3 cut(s)	153, 228, 415
BfaI	CTAG	1 cut(s)	737
BfmI	CTRYAG	3 cut(s)	216, 516, 549
BfuAI	ACCTGC	1 cut(s)	904
BglI	GCCNNNNNGGC	1 cut(s)	31
BisI	GCNGC	2 cut(s)	35, 216
BlsI	GCNGC	2 cut(s)	36, 217
Bme1390I	CCNGG	2 cut(s)	47, 613
BmgBI	CACGTC	1 cut(s)	9
BmiI	GGNNCC	3 cut(s)	51, 583, 733
BmrFI	CCNGG	2 cut(s)	47, 613
BmsI	GCATC	3 cut(s)	392, 808, 875
BpuEI	CTTGAG	3 cut(s)	329, 403, 927
BsaJI	CCNNGG	5 cut(s)	90, 318, 429, 846, 960
BsaWI	WCCGGW	2 cut(s)	52, 191
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 420, 902
BseBI	CCWGG	2 cut(s)	47, 613
BseDI	CCNNGG	5 cut(s)	90, 318, 429, 846, 960
BseGI	GGATG	2 cut(s)	227, 823
BseLI	CCNNNNNNNGG	3 cut(s)	52, 420, 902
BseMII	CTCAG	1 cut(s)	96
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	2 cut(s)	21, 202
BshFI	GGCC	1 cut(s)	959
BshNI	GGYRCC	1 cut(s)	49
BsiHKAI	GWGCWC	2 cut(s)	8, 438
BsiSI	CCGG	3 cut(s)	53, 192, 900
BslI	CCNNNNNNNGG	3 cut(s)	52, 420, 902
BsmAI	GTCTC	3 cut(s)	153, 228, 415
BsnI	GGCC	1 cut(s)	959
Bsp1286I	GDGCHC	2 cut(s)	8, 438
Bsp143I	GATC	3 cut(s)	280, 553, 805
Bsp19I	CCATGG	1 cut(s)	846
BspACI	CCGC	2 cut(s)	37, 138
BspANI	GGCC	1 cut(s)	959
BspCNI	CTCAG	1 cut(s)	95
BspHI	TCATGA	1 cut(s)	666
BspLI	GGNNCC	3 cut(s)	51, 583, 733
BspMAI	CTGCAG	2 cut(s)	220, 553
BspMI	ACCTGC	1 cut(s)	904
BspPI	GGATC	1 cut(s)	548
BspT107I	GGYRCC	1 cut(s)	49
BssECI	CCNNGG	5 cut(s)	90, 318, 429, 846, 960
BssMI	GATC	3 cut(s)	280, 553, 805
BssT1I	CCWWGG	4 cut(s)	318, 429, 846, 960
Bst2UI	CCWGG	2 cut(s)	47, 613
Bst4CI	ACNGT	2 cut(s)	338, 874
Bst6I	CTCTTC	1 cut(s)	878
BstAPI	GCANNNNNTGC	1 cut(s)	368
BstC8I	GCNNGC	1 cut(s)	392
BstDEI	CTNAG	3 cut(s)	82, 834, 858
BstDSI	CCRYGG	1 cut(s)	846
BstENI	CCTNNNNNAGG	1 cut(s)	900
BstF5I	GGATG	2 cut(s)	227, 823
BstKTI	GATC	3 cut(s)	283, 556, 808
BstMAI	GTCTC	3 cut(s)	153, 228, 415
BstMBI	GATC	3 cut(s)	280, 553, 805
BstMWI	GCNNNNNNNGC	7 cut(s)	31, 368, 400, 433, 848, 863, 896
BstNI	CCWGG	2 cut(s)	47, 613
BstSCI	CCNGG	2 cut(s)	45, 611
BstSFI	CTRYAG	3 cut(s)	216, 516, 549
BstV1I	GCAGC	2 cut(s)	21, 202
BstX2I	RGATCY	1 cut(s)	553
BstYI	RGATCY	1 cut(s)	553
BsuRI	GGCC	1 cut(s)	959
BtgI	CCRYGG	1 cut(s)	846
BtrI	CACGTC	1 cut(s)	9
BtsCI	GGATG	2 cut(s)	227, 823
BtsIMutI	CAGTG	2 cut(s)	98, 343
BveI	ACCTGC	1 cut(s)	904
Cac8I	GCNNGC	1 cut(s)	392
CaiI	CAGNNNCTG	1 cut(s)	557
CciI	TCATGA	1 cut(s)	666
Csp6I	GTAC	2 cut(s)	50, 565
CviAII	CATG	3 cut(s)	407, 667, 847
CviQI	GTAC	2 cut(s)	50, 565
DdeI	CTNAG	3 cut(s)	82, 834, 858
DpnI	GATC	3 cut(s)	282, 555, 807
DpnII	GATC	3 cut(s)	280, 553, 805
Eam1104I	CTCTTC	1 cut(s)	878
EarI	CTCTTC	1 cut(s)	878
Eco130I	CCWWGG	4 cut(s)	318, 429, 846, 960
Eco32I	GATATC	1 cut(s)	315
Eco57I	CTGAAG	1 cut(s)	843
EcoNI	CCTNNNNNAGG	1 cut(s)	900
EcoRI	GAATTC	1 cut(s)	187
EcoRII	CCWGG	2 cut(s)	45, 611
EcoRV	GATATC	1 cut(s)	315
EcoT14I	CCWWGG	4 cut(s)	318, 429, 846, 960
ErhI	CCWWGG	4 cut(s)	318, 429, 846, 960
FaeI	CATG	3 cut(s)	410, 670, 850
FaiI	YATR	7 cut(s)	408, 491, 509, 587, 589, 668, 848
FatI	CATG	3 cut(s)	406, 666, 846
FbaI	TGATCA	1 cut(s)	805
Fnu4HI	GCNGC	2 cut(s)	35, 216
FokI	GGATG	2 cut(s)	214, 830
Fsp4HI	GCNGC	2 cut(s)	35, 216
FspBI	CTAG	1 cut(s)	737
GluI	GCNGC	2 cut(s)	35, 216
HaeIII	GGCC	1 cut(s)	959
HapII	CCGG	3 cut(s)	53, 192, 900
Hin1II	CATG	3 cut(s)	410, 670, 850
HinfI	GANTC	8 cut(s)	20, 86, 134, 221, 485, 539, 744, 755
HpaII	CCGG	3 cut(s)	53, 192, 900
HphI	GGTGA	2 cut(s)	515, 782
Hpy188I	TCNGA	9 cut(s)	85, 91, 175, 232, 285, 442, 538, 646, 760
Hpy188III	TCNNGA	2 cut(s)	557, 667
Hpy99I	CGWCG	1 cut(s)	13
HpyAV	CCTTC	6 cut(s)	123, 323, 473, 618, 847, 949
HpyCH4III	ACNGT	2 cut(s)	338, 874
HpyCH4IV	ACGT	1 cut(s)	8
HpyCH4V	TGCA	4 cut(s)	218, 356, 371, 551
HpyF10VI	GCNNNNNNNGC	7 cut(s)	31, 368, 400, 433, 848, 863, 896
HpyF3I	CTNAG	3 cut(s)	82, 834, 858
HpySE526I	ACGT	1 cut(s)	8
Hsp92II	CATG	3 cut(s)	410, 670, 850
KpnI	GGTACC	1 cut(s)	53
Ksp22I	TGATCA	1 cut(s)	805
Kzo9I	GATC	3 cut(s)	280, 553, 805
Lsp1109I	GCAGC	2 cut(s)	21, 202
LweI	GCATC	3 cut(s)	392, 808, 875
MaeI	CTAG	1 cut(s)	737
MaeII	ACGT	1 cut(s)	8
MaeIII	GTNAC	1 cut(s)	770
MalI	GATC	3 cut(s)	282, 555, 807
MboI	GATC	3 cut(s)	280, 553, 805
MboII	GAAGA	8 cut(s)	153, 191, 290, 313, 389, 773, 836, 895
MflI	RGATCY	1 cut(s)	553
MhlI	GDGCHC	2 cut(s)	8, 438
MluCI	AATT	4 cut(s)	74, 143, 187, 528
MlyI	GAGTC	2 cut(s)	29, 230
MmeI	TCCRAC	2 cut(s)	475, 624
MroXI	GAANNNNTTC	1 cut(s)	674
MseI	TTAA	1 cut(s)	242
MspA1I	CMGCKG	1 cut(s)	685
MspI	CCGG	3 cut(s)	53, 192, 900
MspR9I	CCNGG	2 cut(s)	47, 613
MvaI	CCWGG	2 cut(s)	47, 613
MwoI	GCNNNNNNNGC	7 cut(s)	31, 368, 400, 433, 848, 863, 896
NcoI	CCATGG	1 cut(s)	846
NdeII	GATC	3 cut(s)	280, 553, 805
NlaIII	CATG	3 cut(s)	410, 670, 850
NlaIV	GGNNCC	3 cut(s)	51, 583, 733
NmuCI	GTSAC	1 cut(s)	770
PagI	TCATGA	1 cut(s)	666
PdmI	GAANNNNTTC	1 cut(s)	674
PfeI	GAWTC	6 cut(s)	86, 134, 485, 539, 744, 755
PfoI	TCCNGGA	1 cut(s)	611
PkrI	GCNGC	2 cut(s)	36, 217
PleI	GAGTC	2 cut(s)	28, 229
PpsI	GAGTC	2 cut(s)	28, 229
Psp6I	CCWGG	2 cut(s)	45, 611
PspGI	CCWGG	2 cut(s)	45, 611
PspN4I	GGNNCC	3 cut(s)	51, 583, 733
PstI	CTGCAG	2 cut(s)	220, 553
PstNI	CAGNNNCTG	1 cut(s)	557
PsuI	RGATCY	1 cut(s)	553
PvuII	CAGCTG	1 cut(s)	685
RsaI	GTAC	2 cut(s)	51, 566
RsaNI	GTAC	2 cut(s)	50, 565
SaqAI	TTAA	1 cut(s)	242
SatI	GCNGC	2 cut(s)	35, 216
Sau3AI	GATC	3 cut(s)	280, 553, 805
SchI	GAGTC	2 cut(s)	29, 230
ScrFI	CCNGG	2 cut(s)	47, 613
SduI	GDGCHC	2 cut(s)	8, 438
SfaNI	GCATC	3 cut(s)	392, 808, 875
SfcI	CTRYAG	3 cut(s)	216, 516, 549
SmlI	CTYRAG	3 cut(s)	308, 418, 942
SmoI	CTYRAG	3 cut(s)	308, 418, 942
Sse9I	AATT	4 cut(s)	74, 143, 187, 528
SsiI	CCGC	2 cut(s)	37, 138
SspMI	CTAG	1 cut(s)	737
StyD4I	CCNGG	2 cut(s)	45, 611
StyI	CCWWGG	4 cut(s)	318, 429, 846, 960
TaaI	ACNGT	2 cut(s)	338, 874
TaiI	ACGT	1 cut(s)	11
TaqI	TCGA	2 cut(s)	11, 869
TasI	AATT	4 cut(s)	74, 143, 187, 528
TfiI	GAWTC	6 cut(s)	86, 134, 485, 539, 744, 755
Tru1I	TTAA	1 cut(s)	242
Tru9I	TTAA	1 cut(s)	242
TscAI	CASTG	2 cut(s)	105, 343
TseFI	GTSAC	1 cut(s)	770
TseI	GCWGC	2 cut(s)	34, 215
Tsp45I	GTSAC	1 cut(s)	770
TspDTI	ATGAA	5 cut(s)	54, 192, 667, 683, 723
TspRI	CASTG	2 cut(s)	105, 343
XagI	CCTNNNNNAGG	1 cut(s)	900
XapI	RAATTY	1 cut(s)	187
XmnI	GAANNNNTTC	1 cut(s)	674
XspI	CTAG	1 cut(s)	737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.