Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007173.1

Orthogroup ID

OG0003451

Physical Location & Seq

Genomic Coordinates Forward (+)

78445 .. 82079

Gene Structure 3635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007173.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

ctgagcctttcgcatcgttcttgcacagtctcggcctctctattccggtgtgggaaggcaaaagcaattttgggttttggtcttggaatcaaagtatcgtgctttgaagtagctgggatgagcagggaggggtctccggattggctgcgcacttttcaggtcccaaaaactgagtcagtactgtcattgtcctcagattctgagtcttcattgaatggacttaattcgggggaggataacagtgatggccgagaactatctcctcataaatcatctggattcgatgaagatgatgataatgaagttatcggtaaatttattgggaaaagtgttgcagggtctccatctgataagagattgaaaggcaagtctccgaaacgaggggaaaaagtagaagaagatataccccagaaaaagaagaagtcagacggatccaagaagagagaaggtaaaacaaggaccgttgttgagaagccttcaaagactcatgaaccgaatgattcagttttggcgttgtcatcagattctgatcctgaaaacagtcctcccagagaggatggtatccacgatggagaatcttctgaccttaaaacgtctcaactgcaatcaataggtaacagtgaggatgcagctcttatgggcagtagtgaagagtctccatctaaacaggctaccaaaggaaaatctttgaagaaaagtccaaaaggaaaaggccagtcacccaagaaagagaagaaaaagatagatagcaaagaaaaagaaggaatttgtggcaatgtggaagtggcagagaaagaagcttctgacaagcagattgaaccacgtgtatccaccacaacattgccgttggtgctctctgagaaagtccatcgtacaaaggcacttgttgagtgtgaaaaggactccatagatttgagtggtgatatgggtgctgtaggacgggtagtagtttcagattctagatctgggcatagcgagatgtgcttagatttaaaaggaaccatttacaaaacaaccatagttccttccaggacattttgtgttgttagctttggacagtctgaggcaaagatagaagctatcatgaatgacttcattcagctgaaaccagaaacatatgaagctgaaacaatggttgaaggaacactagagggtttcttatttgattccgaagatgaggctgacaaagttcctaaagcaactcctcatcaaactgataaaaatgaggatactgaagaacaaaccaatgggacaaccaaagggaaagctgacaaagcatcgagggttgtaaagaagagagataagcctgcaggaggcaagccacagccaccaaagaaagcaagaaagaaaactcaactttccaagaagcccaagaacaaaaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008544 GO:0009058 GO:0009059 GO:0009330 GO:0009653 GO:0009888 GO:0009913 GO:0009987 GO:0010026 GO:0010090 GO:0016043 GO:0022402 GO:0022622 GO:0030154 GO:0030307 GO:0030855 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034641 GO:0034645 GO:0040008 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045927 GO:0046483 GO:0048364 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051128 GO:0051276 GO:0060429 GO:0065007 GO:0071704 GO:0071840 GO:0090304 GO:0090558 GO:0090626 GO:0097159 GO:0099402 GO:1901360 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

461

Amino Acids

49.9

Weight (kDa)

8.66

Isoelectric Point (pI)

50.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630
fragaria_vesca	FvH4_7g33320 FvH4_7g33320
malus_domestica	MD01G1231400.v1.1 MD07G1303400.v1.1
prunus_persica	Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1
pyrus_communis	pycom01g23940 pycom07g27630
rosa_chinensis	RchiOBHm_Chr1g0383301
rosa_laevigata	RLG00000026115
rosa_multiflora	Rmu_sc0007173.1_g000019 Rmu_sc0014196.1_g000003
rosa_roxburghii	Rroxscaffold_4G00277420
rosa_rugosa	Rorug01G0440400 Rorug01G0440400
rosa_samantha	Rh1AG466000 Rh1BG423400 Rh1CG436600 Rh1DG456100
rosa_wichuraiana	Rw1G040640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	149
AccIII	TCCGGA	1 cut(s)	136
AclWI	GGATC	3 cut(s)	426, 439, 524
AcoI	YGGCCR	1 cut(s)	247
AcsI	RAATTY	2 cut(s)	314, 765
AcuI	CTGAAG	1 cut(s)	1254
AcvI	CACGTG	1 cut(s)	824
AfaI	GTAC	2 cut(s)	180, 874
AfiI	CCNNNNNNNGG	2 cut(s)	380, 1313
AflIII	ACRYGT	1 cut(s)	823
AgsI	TTSAA	7 cut(s)	107, 214, 361, 480, 691, 818, 1139
AjnI	CCWGG	1 cut(s)	1028
AluBI	AGCT	8 cut(s)	113, 632, 800, 1050, 1079, 1102, 1124, 1268
AluI	AGCT	8 cut(s)	113, 632, 800, 1050, 1079, 1102, 1124, 1268
Alw21I	GWGCWC	1 cut(s)	855
Alw26I	GTCTC	6 cut(s)	34, 138, 345, 375, 600, 660
AlwI	GGATC	3 cut(s)	426, 439, 524
AlwNI	CAGNNNCTG	2 cut(s)	200, 527
Aor13HI	TCCGGA	1 cut(s)	136
AoxI	GGCC	3 cut(s)	33, 247, 712
ApeKI	GCWGC	2 cut(s)	145, 629
ApoI	RAATTY	2 cut(s)	314, 765
ArsI	GACNNNNNNTTYG	2 cut(s)	158, 190
Asp700I	GAANNNNTTC	1 cut(s)	1091
AspLEI	GCGC	1 cut(s)	150
AspS9I	GGNCC	2 cut(s)	160, 459
AsuHPI	GGTGA	2 cut(s)	711, 932
AvaII	GGWCC	2 cut(s)	160, 459
BamHI	GGATCC	1 cut(s)	431
BarI	GAAGNNNNNNTAC	2 cut(s)	387, 419
BbrPI	CACGTG	1 cut(s)	824
BbsI	GAAGAC	1 cut(s)	198
Bbv12I	GWGCWC	1 cut(s)	855
BbvI	GCAGC	2 cut(s)	132, 641
BccI	CCATC	6 cut(s)	239, 352, 551, 563, 667, 876
BceAI	ACGGC	1 cut(s)	829
BciT130I	CCWGG	1 cut(s)	1030
BciVI	GTATCC	3 cut(s)	572, 838, 1222
BcoDI	GTCTC	6 cut(s)	34, 138, 345, 375, 600, 660
BfaI	CTAG	2 cut(s)	960, 1148
BfmI	CTRYAG	2 cut(s)	933, 1308
BfuI	GTATCC	3 cut(s)	572, 838, 1222
BglII	AGATCT	1 cut(s)	962
BisI	GCNGC	2 cut(s)	146, 630
BlsI	GCNGC	2 cut(s)	147, 631
BmcAI	AGTACT	1 cut(s)	180
Bme1390I	CCNGG	1 cut(s)	1030
Bme18I	GGWCC	2 cut(s)	160, 459
BmgT120I	GGNCC	2 cut(s)	160, 459
BmiI	GGNNCC	3 cut(s)	162, 433, 1000
BmrFI	CCNGG	1 cut(s)	1030
BmsI	GCATC	3 cut(s)	22, 616, 1286
BpiI	GAAGAC	1 cut(s)	198
BsaAI	YACGTR	1 cut(s)	824
BsaBI	GATNNNNATC	1 cut(s)	528
BsaI	GGTCTC	2 cut(s)	138, 345
BsaWI	WCCGGW	2 cut(s)	45, 136
Bsc4I	CCNNNNNNNGG	2 cut(s)	380, 1313
Bse1I	ACTGG	1 cut(s)	715
Bse3DI	GCAATG	2 cut(s)	781, 839
Bse8I	GATNNNNATC	1 cut(s)	528
BseAI	TCCGGA	1 cut(s)	136
BseBI	CCWGG	1 cut(s)	1030
BseGI	GGATG	3 cut(s)	123, 562, 631
BseJI	GATNNNNATC	1 cut(s)	528
BseLI	CCNNNNNNNGG	2 cut(s)	380, 1313
BseMI	GCAATG	2 cut(s)	781, 839
BseMII	CTCAG	5 cut(s)	162, 192, 207, 849, 1053
BseNI	ACTGG	1 cut(s)	715
BseRI	GAGGAG	2 cut(s)	252, 1194
BseXI	GCAGC	2 cut(s)	132, 641
BseYI	CCCAGC	1 cut(s)	113
BshFI	GGCC	3 cut(s)	35, 249, 714
BsiHKAI	GWGCWC	1 cut(s)	855
BsiSI	CCGG	2 cut(s)	46, 137
BslFI	GGGAC	2 cut(s)	146, 1264
BslI	CCNNNNNNNGG	2 cut(s)	380, 1313
BsmAI	GTCTC	6 cut(s)	34, 138, 345, 375, 600, 660
BsmBI	CGTCTC	1 cut(s)	600
BsmFI	GGGAC	2 cut(s)	146, 1264
BsnI	GGCC	3 cut(s)	35, 249, 714
Bso31I	GGTCTC	2 cut(s)	138, 345
Bsp1286I	GDGCHC	1 cut(s)	855
Bsp13I	TCCGGA	1 cut(s)	136
Bsp143I	GATC	3 cut(s)	431, 529, 962
BspANI	GGCC	3 cut(s)	35, 249, 714
BspCNI	CTCAG	5 cut(s)	163, 193, 206, 850, 1054
BspEI	TCCGGA	1 cut(s)	136
BspHI	TCATGA	2 cut(s)	487, 1083
BspLI	GGNNCC	3 cut(s)	162, 433, 1000
BspMAI	CTGCAG	1 cut(s)	1312
BspPI	GGATC	3 cut(s)	426, 439, 524
BspTNI	GGTCTC	2 cut(s)	138, 345
BsrDI	GCAATG	2 cut(s)	781, 839
BsrI	ACTGG	1 cut(s)	715
BssMI	GATC	3 cut(s)	431, 529, 962
Bst2UI	CCWGG	1 cut(s)	1030
Bst4CI	ACNGT	7 cut(s)	28, 183, 242, 463, 542, 620, 1059
Bst6I	CTCTTC	3 cut(s)	434, 645, 1289
BstBAI	YACGTR	1 cut(s)	824
BstC8I	GCNNGC	2 cut(s)	1308, 1319
BstDEI	CTNAG	7 cut(s)	2, 171, 193, 201, 858, 985, 1062
BstENI	CCTNNNNNAGG	1 cut(s)	1311
BstF5I	GGATG	3 cut(s)	123, 562, 631
BstHHI	GCGC	1 cut(s)	150
BstKTI	GATC	3 cut(s)	434, 532, 965
BstMAI	GTCTC	6 cut(s)	34, 138, 345, 375, 600, 660
BstMBI	GATC	3 cut(s)	431, 529, 962
BstMWI	GCNNNNNNNGC	3 cut(s)	850, 981, 1274
BstNI	CCWGG	1 cut(s)	1030
BstSCI	CCNGG	1 cut(s)	1028
BstSFI	CTRYAG	2 cut(s)	933, 1308
BstV1I	GCAGC	2 cut(s)	132, 641
BstV2I	GAAGAC	1 cut(s)	198
BstX2I	RGATCY	2 cut(s)	431, 962
BstYI	RGATCY	2 cut(s)	431, 962
BsuI	GTATCC	3 cut(s)	572, 838, 1222
BsuRI	GGCC	3 cut(s)	35, 249, 714
BtsCI	GGATG	3 cut(s)	123, 562, 631
BtsIMutI	CAGTG	2 cut(s)	247, 625
Cac8I	GCNNGC	2 cut(s)	1308, 1319
CaiI	CAGNNNCTG	2 cut(s)	200, 527
CciI	TCATGA	2 cut(s)	487, 1083
CfoI	GCGC	1 cut(s)	150
Cfr13I	GGNCC	2 cut(s)	160, 459
Csp6I	GTAC	2 cut(s)	179, 873
CviAII	CATG	2 cut(s)	488, 1084
CviQI	GTAC	2 cut(s)	179, 873
DdeI	CTNAG	7 cut(s)	2, 171, 193, 201, 858, 985, 1062
DpnI	GATC	3 cut(s)	433, 531, 964
DpnII	GATC	3 cut(s)	431, 529, 962
DraI	TTTAAA	1 cut(s)	993
EaeI	YGGCCR	1 cut(s)	247
Eam1104I	CTCTTC	3 cut(s)	434, 645, 1289
EarI	CTCTTC	3 cut(s)	434, 645, 1289
Eco31I	GGTCTC	2 cut(s)	138, 345
Eco47I	GGWCC	2 cut(s)	160, 459
Eco57I	CTGAAG	1 cut(s)	1254
Eco72I	CACGTG	1 cut(s)	824
EcoNI	CCTNNNNNAGG	1 cut(s)	1311
EcoO109I	RGGNCCY	1 cut(s)	160
EcoRII	CCWGG	1 cut(s)	1028
Esp3I	CGTCTC	1 cut(s)	600
FaeI	CATG	2 cut(s)	491, 1087
FaqI	GGGAC	2 cut(s)	146, 1264
FatI	CATG	2 cut(s)	487, 1083
FauNDI	CATATG	1 cut(s)	1117
Fnu4HI	GCNGC	2 cut(s)	146, 630
FokI	GGATG	3 cut(s)	130, 569, 638
Fsp4HI	GCNGC	2 cut(s)	146, 630
FspBI	CTAG	2 cut(s)	960, 1148
FspI	TGCGCA	1 cut(s)	149
GlaI	GCGC	1 cut(s)	149
GluI	GCNGC	2 cut(s)	146, 630
GsaI	CCCAGC	1 cut(s)	117
HaeIII	GGCC	3 cut(s)	35, 249, 714
HapII	CCGG	2 cut(s)	46, 137
HhaI	GCGC	1 cut(s)	150
Hin1II	CATG	2 cut(s)	491, 1087
Hin6I	GCGC	1 cut(s)	148
HinP1I	GCGC	1 cut(s)	148
HindIII	AAGCTT	1 cut(s)	798
HpaII	CCGG	2 cut(s)	46, 137
HphI	GGTGA	2 cut(s)	711, 932
Hpy188III	TCNNGA	6 cut(s)	137, 276, 488, 533, 960, 1084
HpyAV	CCTTC	6 cut(s)	49, 440, 486, 755, 1035, 1133
HpyCH4III	ACNGT	7 cut(s)	28, 183, 242, 463, 542, 620, 1059
HpyCH4IV	ACGT	2 cut(s)	593, 823
HpyCH4V	TGCA	5 cut(s)	24, 335, 604, 629, 1310
HpyF10VI	GCNNNNNNNGC	3 cut(s)	850, 981, 1274
HpyF3I	CTNAG	7 cut(s)	2, 171, 193, 201, 858, 985, 1062
HpySE526I	ACGT	2 cut(s)	593, 823
Hsp92II	CATG	2 cut(s)	491, 1087
HspAI	GCGC	1 cut(s)	148
Kpn2I	TCCGGA	1 cut(s)	136
Kzo9I	GATC	3 cut(s)	431, 529, 962
Lsp1109I	GCAGC	2 cut(s)	132, 641
LweI	GCATC	3 cut(s)	22, 616, 1286
MaeI	CTAG	2 cut(s)	960, 1148
MaeII	ACGT	2 cut(s)	593, 823
MaeIII	GTNAC	2 cut(s)	614, 717
MalI	GATC	3 cut(s)	433, 531, 964
MboI	GATC	3 cut(s)	431, 529, 962
MflI	RGATCY	2 cut(s)	431, 962
MhlI	GDGCHC	1 cut(s)	855
MluCI	AATT	4 cut(s)	66, 223, 314, 765
MlyI	GAGTC	5 cut(s)	182, 212, 478, 662, 896
MroI	TCCGGA	1 cut(s)	136
MroXI	GAANNNNTTC	1 cut(s)	1091
MseI	TTAA	3 cut(s)	222, 588, 992
MspA1I	CMGCKG	1 cut(s)	1102
MspI	CCGG	2 cut(s)	46, 137
MspR9I	CCNGG	1 cut(s)	1030
MvaI	CCWGG	1 cut(s)	1030
MwoI	GCNNNNNNNGC	3 cut(s)	850, 981, 1274
NdeI	CATATG	1 cut(s)	1117
NdeII	GATC	3 cut(s)	431, 529, 962
NlaIII	CATG	2 cut(s)	491, 1087
NlaIV	GGNNCC	3 cut(s)	162, 433, 1000
NmeAIII	GCCGAG	2 cut(s)	11, 275
NmuCI	GTSAC	1 cut(s)	717
NsbI	TGCGCA	1 cut(s)	149
PagI	TCATGA	2 cut(s)	487, 1083
PdmI	GAANNNNTTC	1 cut(s)	1091
PfeI	GAWTC	8 cut(s)	87, 197, 279, 500, 524, 575, 956, 1166
PfoI	TCCNGGA	1 cut(s)	1028
PkrI	GCNGC	2 cut(s)	147, 631
PleI	GAGTC	5 cut(s)	181, 211, 478, 661, 896
PmaCI	CACGTG	1 cut(s)	824
PmlI	CACGTG	1 cut(s)	824
PpsI	GAGTC	5 cut(s)	181, 211, 478, 661, 896
Ppu21I	YACGTR	1 cut(s)	824
PpuMI	RGGWCCY	1 cut(s)	160
Psp5II	RGGWCCY	1 cut(s)	160
Psp6I	CCWGG	1 cut(s)	1028
PspCI	CACGTG	1 cut(s)	824
PspFI	CCCAGC	1 cut(s)	113
PspGI	CCWGG	1 cut(s)	1028
PspN4I	GGNNCC	3 cut(s)	162, 433, 1000
PspPI	GGNCC	2 cut(s)	160, 459
PspPPI	RGGWCCY	1 cut(s)	160
PstI	CTGCAG	1 cut(s)	1312
PstNI	CAGNNNCTG	2 cut(s)	200, 527
PsuI	RGATCY	2 cut(s)	431, 962
PvuII	CAGCTG	1 cut(s)	1102
RsaI	GTAC	2 cut(s)	180, 874
RsaNI	GTAC	2 cut(s)	179, 873
SaqAI	TTAA	3 cut(s)	222, 588, 992
SatI	GCNGC	2 cut(s)	146, 630
Sau3AI	GATC	3 cut(s)	431, 529, 962
Sau96I	GGNCC	2 cut(s)	160, 459
SbfI	CCTGCAGG	1 cut(s)	1312
ScaI	AGTACT	1 cut(s)	180
SchI	GAGTC	5 cut(s)	182, 212, 478, 662, 896
ScrFI	CCNGG	1 cut(s)	1030
SdaI	CCTGCAGG	1 cut(s)	1312
SduI	GDGCHC	1 cut(s)	855
SfaNI	GCATC	3 cut(s)	22, 616, 1286
SfcI	CTRYAG	2 cut(s)	933, 1308
SinI	GGWCC	2 cut(s)	160, 459
Sse8387I	CCTGCAGG	1 cut(s)	1312
Sse9I	AATT	4 cut(s)	66, 223, 314, 765
SspMI	CTAG	2 cut(s)	960, 1148
StyD4I	CCNGG	1 cut(s)	1028
TaaI	ACNGT	7 cut(s)	28, 183, 242, 463, 542, 620, 1059
TaiI	ACGT	2 cut(s)	596, 826
TaqI	TCGA	2 cut(s)	282, 1280
TasI	AATT	4 cut(s)	66, 223, 314, 765
TatI	WGTACW	1 cut(s)	178
TfiI	GAWTC	8 cut(s)	87, 197, 279, 500, 524, 575, 956, 1166
Tru1I	TTAA	3 cut(s)	222, 588, 992
Tru9I	TTAA	3 cut(s)	222, 588, 992
TscAI	CASTG	2 cut(s)	247, 625
TseFI	GTSAC	1 cut(s)	717
TseI	GCWGC	2 cut(s)	145, 629
Tsp45I	GTSAC	1 cut(s)	717
TspDTI	ATGAA	7 cut(s)	198, 300, 315, 504, 1084, 1100, 1134
TspGWI	ACGGA	1 cut(s)	444
TspRI	CASTG	2 cut(s)	247, 625
VpaK11BI	GGWCC	2 cut(s)	160, 459
XagI	CCTNNNNNAGG	1 cut(s)	1311
XapI	RAATTY	2 cut(s)	314, 765
XbaI	TCTAGA	1 cut(s)	959
XmnI	GAANNNNTTC	1 cut(s)	1091
XspI	CTAG	2 cut(s)	960, 1148
ZrmI	AGTACT	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.