Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0003451

Physical Location & Seq

Genomic Coordinates Reverse (-)

27271778 .. 27273813

Gene Structure 2036 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g27630.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGAGCACGTCGAGGGAGGAGTCGCCAGATTGGCTGCGCTCTTTCCAGGTACCCGAAACTCATTCACCAGTGGAATTATCCTCAGATTCCGAGGCTTCACTGAATGGAGTTCCTTCGGGGGAGGATAAATCAGAAACTCATTCACCAGTGGAATTATCCTCAGATTCCGAGGCTTCTCTGAATGGTGTTCCTTCGAGGGAGGATAAAACCGATTCCCCTGAATTGTCTCCATGTAAATCTTCTAAACTTGCCGATGAAGATGAGAATAAAGTTCTTGGGGAAAGTGTTGCAGAGTCTCCATCTGGTAAGAAATTAAAACGAAACTCTCCAAAGCAAAGGAAAAAAGCAGAAGATCAGAAATCCCCTAAAAAGAAGAAACTAGAGATATCCAAGGAAGGAGAAGGAAACAGTGATGATGCAGAAGTTGCAGAGGCGGAAGTTGCAGAGGAAGAACCATCTGGGAAGCACATTGAGCCTCATGTCTCCACCTCAAGGTTGCCTTTGGTGCTCTCTGAAAAAGTCCAACGCTCGAAGGCACTTGTTGAGTGTGAAGGAGAATCCATAGATTTGAGTGGTGATATGGGTGCTGTAGGACGGGTAATTATTTTGGATTCCAAATCTGCGGATCCTGAAATGTACCTTGATTTGAAAGGAACCATATACAAAACAACAATAGTTCCTTCCAGGACATTTTGTGTTGTTAGCTTTGGTCAGTCGGAGGCAAAGATTGAAGCTATCATGAATGACTTCATTCAGTTGAAACCACAATCAAATGTTGATGAAGCTGAAACAATGGTTGAAGGAACCCTAGATGGTTTCTCGTTCAATTCAGAAGATGAGGGTGACAAACTTCCTAAAGCCACACCTCAACAAGCTGATCAAAACGAGGATGCTGAAGAACAAAATAAGGGGGTAACCAAGGCGAAGGCTAAGAAAGCATCGACTGTTGTAAGGAAGAGAGCTAAACCTGCCGGAGGGAAGCCACAATCAGCGAAGAAACCAAGAAAGAAACCTCAAGTTTCCAAGAAGGCTAAGGGCAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008544 GO:0009058 GO:0009059 GO:0009330 GO:0009653 GO:0009888 GO:0009913 GO:0009987 GO:0010026 GO:0010090 GO:0016043 GO:0022402 GO:0022622 GO:0030154 GO:0030307 GO:0030855 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034641 GO:0034645 GO:0040008 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045927 GO:0046483 GO:0048364 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051128 GO:0051276 GO:0060429 GO:0065007 GO:0071704 GO:0071840 GO:0090304 GO:0090558 GO:0090626 GO:0097159 GO:0099402 GO:1901360 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

349

Amino Acids

37.71

Weight (kDa)

5.42

Isoelectric Point (pI)

60.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630
fragaria_vesca	FvH4_7g33320 FvH4_7g33320
malus_domestica	MD01G1231400.v1.1 MD07G1303400.v1.1
prunus_persica	Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1
pyrus_communis	pycom01g23940 pycom07g27630
rosa_chinensis	RchiOBHm_Chr1g0383301
rosa_laevigata	RLG00000026115
rosa_multiflora	Rmu_sc0007173.1_g000019 Rmu_sc0014196.1_g000003
rosa_roxburghii	Rroxscaffold_4G00277420
rosa_rugosa	Rorug01G0440400 Rorug01G0440400
rosa_samantha	Rh1AG466000 Rh1BG423400 Rh1CG436600 Rh1DG456100
rosa_wichuraiana	Rw1G040640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	976
Acc65I	GGTACC	1 cut(s)	49
AccB1I	GGYRCC	1 cut(s)	49
AciI	CCGC	2 cut(s)	434, 623
AclWI	GGATC	2 cut(s)	620, 633
AcuI	CTGAAG	1 cut(s)	915
AfaI	GTAC	2 cut(s)	51, 638
AfiI	CCNNNNNNNGG	2 cut(s)	492, 974
AgsI	TTSAA	5 cut(s)	649, 731, 760, 800, 826
AjiI	CACGTC	1 cut(s)	9
AjnI	CCWGG	2 cut(s)	45, 683
AluBI	AGCT	5 cut(s)	705, 734, 785, 875, 962
AluI	AGCT	5 cut(s)	705, 734, 785, 875, 962
Alw21I	GWGCWC	2 cut(s)	8, 510
Alw26I	GTCTC	3 cut(s)	231, 300, 487
AlwI	GGATC	2 cut(s)	620, 633
ApeKI	GCWGC	1 cut(s)	34
Asp700I	GAANNNNTTC	1 cut(s)	746
Asp718I	GGTACC	1 cut(s)	49
AspLEI	GCGC	1 cut(s)	39
AsuHPI	GGTGA	4 cut(s)	57, 135, 587, 854
BamHI	GGATCC	1 cut(s)	625
BanI	GGYRCC	1 cut(s)	49
Bbv12I	GWGCWC	2 cut(s)	8, 510
BbvI	GCAGC	1 cut(s)	21
BccI	CCATC	3 cut(s)	307, 463, 806
BciT130I	CCWGG	2 cut(s)	47, 685
BclI	TGATCA	1 cut(s)	877
BcoDI	GTCTC	3 cut(s)	231, 300, 487
BfaI	CTAG	2 cut(s)	380, 809
BfmI	CTRYAG	1 cut(s)	588
BfuAI	ACCTGC	1 cut(s)	976
BglI	GCCNNNNNGGC	1 cut(s)	31
BisI	GCNGC	1 cut(s)	35
BlsI	GCNGC	1 cut(s)	36
Bme1390I	CCNGG	2 cut(s)	47, 685
BmgBI	CACGTC	1 cut(s)	9
BmiI	GGNNCC	4 cut(s)	51, 627, 655, 805
BmrFI	CCNGG	2 cut(s)	47, 685
BmsI	GCATC	3 cut(s)	406, 880, 947
Bpu10I	CCTNAGC	1 cut(s)	1032
BpuEI	CTTGAG	2 cut(s)	475, 999
BsaJI	CCNNGG	4 cut(s)	90, 168, 390, 918
Bsc4I	CCNNNNNNNGG	2 cut(s)	492, 974
Bse1I	ACTGG	2 cut(s)	68, 146
BseBI	CCWGG	2 cut(s)	47, 685
BseDI	CCNNGG	4 cut(s)	90, 168, 390, 918
BseGI	GGATG	1 cut(s)	895
BseLI	CCNNNNNNNGG	2 cut(s)	492, 974
BseMII	CTCAG	2 cut(s)	96, 174
BseNI	ACTGG	2 cut(s)	68, 146
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	1 cut(s)	21
BshNI	GGYRCC	1 cut(s)	49
BsiHKAI	GWGCWC	2 cut(s)	8, 510
BsiSI	CCGG	1 cut(s)	972
BslI	CCNNNNNNNGG	2 cut(s)	492, 974
BsmAI	GTCTC	3 cut(s)	231, 300, 487
Bsp1286I	GDGCHC	2 cut(s)	8, 510
Bsp143I	GATC	3 cut(s)	352, 625, 877
BspACI	CCGC	2 cut(s)	434, 623
BspCNI	CTCAG	2 cut(s)	95, 173
BspHI	TCATGA	1 cut(s)	738
BspLI	GGNNCC	4 cut(s)	51, 627, 655, 805
BspMI	ACCTGC	1 cut(s)	976
BspPI	GGATC	2 cut(s)	620, 633
BspT107I	GGYRCC	1 cut(s)	49
BsrI	ACTGG	2 cut(s)	68, 146
BssECI	CCNNGG	4 cut(s)	90, 168, 390, 918
BssMI	GATC	3 cut(s)	352, 625, 877
BssT1I	CCWWGG	2 cut(s)	390, 918
Bst2UI	CCWGG	2 cut(s)	47, 685
Bst4CI	ACNGT	2 cut(s)	410, 946
Bst6I	CTCTTC	1 cut(s)	950
BstAPI	GCANNNNNTGC	1 cut(s)	425
BstDEI	CTNAG	4 cut(s)	82, 160, 930, 1032
BstEII	GGTNACC	1 cut(s)	913
BstENI	CCTNNNNNAGG	1 cut(s)	972
BstF5I	GGATG	1 cut(s)	895
BstHHI	GCGC	1 cut(s)	39
BstKTI	GATC	3 cut(s)	355, 628, 880
BstMAI	GTCTC	3 cut(s)	231, 300, 487
BstMBI	GATC	3 cut(s)	352, 625, 877
BstMWI	GCNNNNNNNGC	7 cut(s)	31, 425, 440, 472, 505, 935, 968
BstNI	CCWGG	2 cut(s)	47, 685
BstPI	GGTNACC	1 cut(s)	913
BstSCI	CCNGG	2 cut(s)	45, 683
BstSFI	CTRYAG	1 cut(s)	588
BstV1I	GCAGC	1 cut(s)	21
BstX2I	RGATCY	1 cut(s)	625
BstYI	RGATCY	1 cut(s)	625
BtrI	CACGTC	1 cut(s)	9
BtsCI	GGATG	1 cut(s)	895
BtsIMutI	CAGTG	4 cut(s)	75, 98, 153, 415
BveI	ACCTGC	1 cut(s)	976
CciI	TCATGA	1 cut(s)	738
CfoI	GCGC	1 cut(s)	39
Csp6I	GTAC	2 cut(s)	50, 637
CviAII	CATG	3 cut(s)	231, 479, 739
CviQI	GTAC	2 cut(s)	50, 637
DdeI	CTNAG	4 cut(s)	82, 160, 930, 1032
DpnI	GATC	3 cut(s)	354, 627, 879
DpnII	GATC	3 cut(s)	352, 625, 877
Eam1104I	CTCTTC	1 cut(s)	950
EarI	CTCTTC	1 cut(s)	950
EciI	GGCGGA	1 cut(s)	449
Eco130I	CCWWGG	2 cut(s)	390, 918
Eco32I	GATATC	1 cut(s)	387
Eco57I	CTGAAG	1 cut(s)	915
Eco91I	GGTNACC	1 cut(s)	913
EcoNI	CCTNNNNNAGG	1 cut(s)	972
EcoO65I	GGTNACC	1 cut(s)	913
EcoRII	CCWGG	2 cut(s)	45, 683
EcoRV	GATATC	1 cut(s)	387
EcoT14I	CCWWGG	2 cut(s)	390, 918
ErhI	CCWWGG	2 cut(s)	390, 918
FaeI	CATG	3 cut(s)	234, 482, 742
FaiI	YATR	7 cut(s)	232, 480, 563, 581, 659, 661, 740
FalI	AAGNNNNNCTT	2 cut(s)	484, 516
FatI	CATG	3 cut(s)	230, 478, 738
FbaI	TGATCA	1 cut(s)	877
Fnu4HI	GCNGC	1 cut(s)	35
FokI	GGATG	1 cut(s)	902
Fsp4HI	GCNGC	1 cut(s)	35
FspBI	CTAG	2 cut(s)	380, 809
GlaI	GCGC	1 cut(s)	38
GluI	GCNGC	1 cut(s)	35
HapII	CCGG	1 cut(s)	972
HhaI	GCGC	1 cut(s)	39
Hin1II	CATG	3 cut(s)	234, 482, 742
Hin6I	GCGC	1 cut(s)	37
HinP1I	GCGC	1 cut(s)	37
HinfI	GANTC	7 cut(s)	20, 86, 164, 212, 293, 557, 611
HpaII	CCGG	1 cut(s)	972
HphI	GGTGA	4 cut(s)	57, 135, 587, 854
Hpy188III	TCNNGA	2 cut(s)	629, 739
Hpy99I	CGWCG	1 cut(s)	13
HpyCH4III	ACNGT	2 cut(s)	410, 946
HpyCH4IV	ACGT	1 cut(s)	8
HpyCH4V	TGCA	4 cut(s)	290, 419, 428, 443
HpyF10VI	GCNNNNNNNGC	7 cut(s)	31, 425, 440, 472, 505, 935, 968
HpyF3I	CTNAG	4 cut(s)	82, 160, 930, 1032
HpySE526I	ACGT	1 cut(s)	8
Hsp92II	CATG	3 cut(s)	234, 482, 742
HspAI	GCGC	1 cut(s)	37
KpnI	GGTACC	1 cut(s)	53
Ksp22I	TGATCA	1 cut(s)	877
Kzo9I	GATC	3 cut(s)	352, 625, 877
Lsp1109I	GCAGC	1 cut(s)	21
LweI	GCATC	3 cut(s)	406, 880, 947
MaeI	CTAG	2 cut(s)	380, 809
MaeII	ACGT	1 cut(s)	8
MaeIII	GTNAC	2 cut(s)	842, 913
MalI	GATC	3 cut(s)	354, 627, 879
MboI	GATC	3 cut(s)	352, 625, 877
MboII	GAAGA	9 cut(s)	231, 269, 362, 385, 461, 845, 908, 967, 1006
MflI	RGATCY	1 cut(s)	625
MhlI	GDGCHC	2 cut(s)	8, 510
MluCI	AATT	6 cut(s)	74, 152, 221, 311, 600, 826
MlyI	GAGTC	2 cut(s)	29, 302
MmeI	TCCRAC	2 cut(s)	547, 696
MroXI	GAANNNNTTC	1 cut(s)	746
MseI	TTAA	1 cut(s)	314
MspI	CCGG	1 cut(s)	972
MspR9I	CCNGG	2 cut(s)	47, 685
MvaI	CCWGG	2 cut(s)	47, 685
MwoI	GCNNNNNNNGC	7 cut(s)	31, 425, 440, 472, 505, 935, 968
NdeII	GATC	3 cut(s)	352, 625, 877
NlaIII	CATG	3 cut(s)	234, 482, 742
NlaIV	GGNNCC	4 cut(s)	51, 627, 655, 805
NmuCI	GTSAC	1 cut(s)	842
PagI	TCATGA	1 cut(s)	738
PdmI	GAANNNNTTC	1 cut(s)	746
PfeI	GAWTC	5 cut(s)	86, 164, 212, 557, 611
PfoI	TCCNGGA	1 cut(s)	683
PkrI	GCNGC	1 cut(s)	36
PleI	GAGTC	2 cut(s)	28, 301
PpsI	GAGTC	2 cut(s)	28, 301
Psp6I	CCWGG	2 cut(s)	45, 683
PspEI	GGTNACC	1 cut(s)	913
PspGI	CCWGG	2 cut(s)	45, 683
PspN4I	GGNNCC	4 cut(s)	51, 627, 655, 805
PsuI	RGATCY	1 cut(s)	625
RsaI	GTAC	2 cut(s)	51, 638
RsaNI	GTAC	2 cut(s)	50, 637
SaqAI	TTAA	1 cut(s)	314
SatI	GCNGC	1 cut(s)	35
Sau3AI	GATC	3 cut(s)	352, 625, 877
SchI	GAGTC	2 cut(s)	29, 302
ScrFI	CCNGG	2 cut(s)	47, 685
SduI	GDGCHC	2 cut(s)	8, 510
SfaNI	GCATC	3 cut(s)	406, 880, 947
SfcI	CTRYAG	1 cut(s)	588
SmlI	CTYRAG	2 cut(s)	490, 1014
SmoI	CTYRAG	2 cut(s)	490, 1014
Sse9I	AATT	6 cut(s)	74, 152, 221, 311, 600, 826
SsiI	CCGC	2 cut(s)	434, 623
SspMI	CTAG	2 cut(s)	380, 809
StyD4I	CCNGG	2 cut(s)	45, 683
StyI	CCWWGG	2 cut(s)	390, 918
TaaI	ACNGT	2 cut(s)	410, 946
TaiI	ACGT	1 cut(s)	11
TaqI	TCGA	4 cut(s)	11, 194, 530, 941
TasI	AATT	6 cut(s)	74, 152, 221, 311, 600, 826
TfiI	GAWTC	5 cut(s)	86, 164, 212, 557, 611
Tru1I	TTAA	1 cut(s)	314
Tru9I	TTAA	1 cut(s)	314
TscAI	CASTG	4 cut(s)	75, 105, 153, 415
TseFI	GTSAC	1 cut(s)	842
TseI	GCWGC	1 cut(s)	34
Tsp45I	GTSAC	1 cut(s)	842
TspDTI	ATGAA	4 cut(s)	270, 739, 755, 795
TspRI	CASTG	4 cut(s)	75, 105, 153, 415
XagI	CCTNNNNNAGG	1 cut(s)	972
XmnI	GAANNNNTTC	1 cut(s)	746
XspI	CTAG	2 cut(s)	380, 809

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.