Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003451

Physical Location & Seq

Genomic Coordinates Reverse (-)

23712726 .. 23716559

Gene Structure 3834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g33320.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGAGCAGGGAGGGGTCTCCAGATTGGCTGCGGGCTTTTGAGGTCCCAACAACTGAGTCAGTACTGTCATTGTCCTCAGATTCTAGGTCTTCACTGAATGGGGAGGATAACAGTGATGGCCGAGAACCAACTCCTCGTAAATCATCTGAATCCGATGATGATGATAATGAAGTTATAGGTAAATTTCTTGGGAAAAGGGTTGGGTCTCCATCTGATAAGAAATTGAAAGGCAAGTCGCCGAAAAAAGGGGAAACAATAGAAGAACATGTACCCCAGACAAAAAAGAAGTCAGATGGATTCAAGAAAATAGAAGGTAAAACAAAGGCCGTTGTTGAGAAGCCTTCAAAGCCTAACGAACTGAATGATTCGGTTTTGGCGTTGTCATCAGATTCTGATCCTGAAAACAGTCCTCCCAGAGAGGATGATGGAGAGTCTTCTGACCTTAAAATGTCTCAACTGCAATCAAGAGGCAACACTGAGGATGCAGCTGTTATGGACATCAGTGAAGAATCTCCATCTAAACAGGCTTCAAAAGGAAAATCTTTGAAGAAAAGTCCAAAAGGAAAAGGCCAGTCACCCAAGAAAGAGAAGAACAAGACGGATAGCAAAGAAAAAGAAGGAATTAGTGGCGATGTGGAAGTGGCAGAGAAAGAAGCTTCTGACAAGCAAATTGAACCACATGTATCCTCCTCAACACTGCCGTTGGTGCTCTCTGAGAAAGTCCATCGTACAAAGGCACTTGTTGAGTGTGAAAAGGACTCCATAGATTTGAGTGGTGATATGGGTGCTGTAGGACGGGTAATAGTTTCAGAATCTAGATCTGGGCATAGTGAGATGTGCCTAGATTTGAAAGGAACTGTTTACAAAACAACGATAGTTCCTTCCAGGACATTTTGTGTTGTTAGCTTTGGTCCATCCGAGGCAAAGATAGAAGCTATCATGAATGACTTCATTCAGCTGAAACCAGAAACATATGAAGCTGAAACAATGGTTGAAGGAACACTAGAGGGTTTCTTATTTGATTCGGAAGATGAGGCCGACAAAGTTCCTAAAACAATGCCTCATCAAACTGATAAGGATGAGGATACTGAAGAACAAACCAATGGGAAAACCAAAGGGAAAGCTGACAAAGCATCCAAGGTTGTAAAGAAGAGAGATAAGCCTTCAGGAGGGAAGCCACAGCCACCAAAGAAAGCAAGAAAGAAAACTCAGGTTTCCAAGAAGCCCAAGAACAAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008544 GO:0009058 GO:0009059 GO:0009330 GO:0009653 GO:0009888 GO:0009913 GO:0009987 GO:0010026 GO:0010090 GO:0016043 GO:0022402 GO:0022622 GO:0030154 GO:0030307 GO:0030855 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034641 GO:0034645 GO:0040008 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045927 GO:0046483 GO:0048364 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051128 GO:0051276 GO:0060429 GO:0065007 GO:0071704 GO:0071840 GO:0090304 GO:0090558 GO:0090626 GO:0097159 GO:0099402 GO:1901360 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

414

Amino Acids

45.05

Weight (kDa)

6.61

Isoelectric Point (pI)

53.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630
fragaria_vesca	FvH4_7g33320 FvH4_7g33320
malus_domestica	MD01G1231400.v1.1 MD07G1303400.v1.1
prunus_persica	Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1
pyrus_communis	pycom01g23940 pycom07g27630
rosa_chinensis	RchiOBHm_Chr1g0383301
rosa_laevigata	RLG00000026115
rosa_multiflora	Rmu_sc0007173.1_g000019 Rmu_sc0014196.1_g000003
rosa_roxburghii	Rroxscaffold_4G00277420
rosa_rugosa	Rorug01G0440400 Rorug01G0440400
rosa_samantha	Rh1AG466000 Rh1BG423400 Rh1CG436600 Rh1DG456100
rosa_wichuraiana	Rw1G040640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	31
AclWI	GGATC	1 cut(s)	389
AcoI	YGGCCR	1 cut(s)	118
AcsI	RAATTY	1 cut(s)	182
AcuI	CTGAAG	2 cut(s)	1110, 1149
AfaI	GTAC	3 cut(s)	63, 270, 730
AfiI	CCNNNNNNNGG	2 cut(s)	245, 1169
AflIII	ACRYGT	2 cut(s)	265, 679
AgsI	TTSAA	8 cut(s)	226, 301, 345, 531, 547, 674, 850, 995
AjnI	CCWGG	1 cut(s)	884
AluBI	AGCT	7 cut(s)	488, 656, 906, 935, 958, 980, 1124
AluI	AGCT	7 cut(s)	488, 656, 906, 935, 958, 980, 1124
Alw21I	GWGCWC	1 cut(s)	711
Alw26I	GTCTC	3 cut(s)	21, 210, 456
AlwI	GGATC	1 cut(s)	389
AlwNI	CAGNNNCTG	1 cut(s)	392
AoxI	GGCC	4 cut(s)	118, 324, 568, 1035
ApeKI	GCWGC	2 cut(s)	28, 485
ApoI	RAATTY	1 cut(s)	182
ArsI	GACNNNNNNTTYG	2 cut(s)	272, 304
Asp700I	GAANNNNTTC	1 cut(s)	947
AspS9I	GGNCC	2 cut(s)	43, 911
AsuHPI	GGTGA	2 cut(s)	567, 788
AvaII	GGWCC	2 cut(s)	43, 911
BarI	GAAGNNNNNNTAC	2 cut(s)	252, 284
BbsI	GAAGAC	2 cut(s)	81, 426
Bbv12I	GWGCWC	1 cut(s)	711
BbvI	GCAGC	2 cut(s)	15, 497
BccI	CCATC	7 cut(s)	110, 217, 287, 419, 523, 732, 922
BceAI	ACGGC	2 cut(s)	311, 685
BciT130I	CCWGG	1 cut(s)	886
BciVI	GTATCC	2 cut(s)	694, 1078
BcoDI	GTCTC	3 cut(s)	21, 210, 456
BfaI	CTAG	4 cut(s)	84, 816, 842, 1004
BfmI	CTRYAG	1 cut(s)	789
BfuI	GTATCC	2 cut(s)	694, 1078
BglII	AGATCT	1 cut(s)	818
BisI	GCNGC	2 cut(s)	29, 486
BlsI	GCNGC	2 cut(s)	30, 487
BmcAI	AGTACT	1 cut(s)	63
Bme1390I	CCNGG	1 cut(s)	886
Bme18I	GGWCC	2 cut(s)	43, 911
BmgT120I	GGNCC	2 cut(s)	43, 911
BmiI	GGNNCC	1 cut(s)	45
BmrFI	CCNGG	1 cut(s)	886
BmsI	GCATC	2 cut(s)	472, 1142
BpiI	GAAGAC	2 cut(s)	81, 426
BsaBI	GATNNNNATC	1 cut(s)	393
BsaI	GGTCTC	2 cut(s)	21, 210
BsaJI	CCNNGG	2 cut(s)	918, 1137
Bsc4I	CCNNNNNNNGG	2 cut(s)	245, 1169
Bse1I	ACTGG	1 cut(s)	571
Bse8I	GATNNNNATC	1 cut(s)	393
BseBI	CCWGG	1 cut(s)	886
BseDI	CCNNGG	2 cut(s)	918, 1137
BseGI	GGATG	5 cut(s)	427, 487, 914, 1084, 1133
BseJI	GATNNNNATC	1 cut(s)	393
BseLI	CCNNNNNNNGG	2 cut(s)	245, 1169
BseMII	CTCAG	5 cut(s)	45, 90, 468, 705, 1223
BseNI	ACTGG	1 cut(s)	571
BseRI	GAGGAG	2 cut(s)	123, 679
BseXI	GCAGC	2 cut(s)	15, 497
BshFI	GGCC	4 cut(s)	120, 326, 570, 1037
BsiHKAI	GWGCWC	1 cut(s)	711
BslFI	GGGAC	1 cut(s)	29
BslI	CCNNNNNNNGG	2 cut(s)	245, 1169
BsmAI	GTCTC	3 cut(s)	21, 210, 456
BsmFI	GGGAC	1 cut(s)	29
BsnI	GGCC	4 cut(s)	120, 326, 570, 1037
Bso31I	GGTCTC	2 cut(s)	21, 210
Bsp1286I	GDGCHC	1 cut(s)	711
Bsp143I	GATC	2 cut(s)	394, 818
BspACI	CCGC	1 cut(s)	31
BspANI	GGCC	4 cut(s)	120, 326, 570, 1037
BspCNI	CTCAG	5 cut(s)	46, 89, 469, 706, 1222
BspHI	TCATGA	1 cut(s)	939
BspLI	GGNNCC	1 cut(s)	45
BspPI	GGATC	1 cut(s)	389
BspTNI	GGTCTC	2 cut(s)	21, 210
BsrI	ACTGG	1 cut(s)	571
BssECI	CCNNGG	2 cut(s)	918, 1137
BssMI	GATC	2 cut(s)	394, 818
BssT1I	CCWWGG	1 cut(s)	1137
Bst2UI	CCWGG	1 cut(s)	886
Bst4CI	ACNGT	4 cut(s)	66, 113, 407, 859
Bst6I	CTCTTC	1 cut(s)	1145
BstC8I	GCNNGC	1 cut(s)	33
BstDEI	CTNAG	5 cut(s)	54, 76, 477, 714, 1209
BstENI	CCTNNNNNAGG	1 cut(s)	1167
BstF5I	GGATG	5 cut(s)	427, 487, 914, 1084, 1133
BstKTI	GATC	2 cut(s)	397, 821
BstMAI	GTCTC	3 cut(s)	21, 210, 456
BstMBI	GATC	2 cut(s)	394, 818
BstMWI	GCNNNNNNNGC	3 cut(s)	346, 706, 1130
BstNI	CCWGG	1 cut(s)	886
BstNSI	RCATGY	2 cut(s)	269, 683
BstSCI	CCNGG	1 cut(s)	884
BstSFI	CTRYAG	1 cut(s)	789
BstV1I	GCAGC	2 cut(s)	15, 497
BstV2I	GAAGAC	2 cut(s)	81, 426
BstX2I	RGATCY	1 cut(s)	818
BstYI	RGATCY	1 cut(s)	818
BsuI	GTATCC	2 cut(s)	694, 1078
BsuRI	GGCC	4 cut(s)	120, 326, 570, 1037
BtgZI	GCGATG	1 cut(s)	645
BtsCI	GGATG	5 cut(s)	427, 487, 914, 1084, 1133
BtsI	GCAGTG	1 cut(s)	695
BtsIMutI	CAGTG	5 cut(s)	92, 118, 474, 508, 695
Cac8I	GCNNGC	1 cut(s)	33
CaiI	CAGNNNCTG	1 cut(s)	392
CciI	TCATGA	1 cut(s)	939
Cfr13I	GGNCC	2 cut(s)	43, 911
Csp6I	GTAC	3 cut(s)	62, 269, 729
CviAII	CATG	3 cut(s)	266, 680, 940
CviQI	GTAC	3 cut(s)	62, 269, 729
DdeI	CTNAG	5 cut(s)	54, 76, 477, 714, 1209
DpnI	GATC	2 cut(s)	396, 820
DpnII	GATC	2 cut(s)	394, 818
EaeI	YGGCCR	1 cut(s)	118
Eam1104I	CTCTTC	1 cut(s)	1145
EarI	CTCTTC	1 cut(s)	1145
Eco130I	CCWWGG	1 cut(s)	1137
Eco31I	GGTCTC	2 cut(s)	21, 210
Eco47I	GGWCC	2 cut(s)	43, 911
Eco57I	CTGAAG	2 cut(s)	1110, 1149
EcoNI	CCTNNNNNAGG	1 cut(s)	1167
EcoO109I	RGGNCCY	1 cut(s)	43
EcoRII	CCWGG	1 cut(s)	884
EcoT14I	CCWWGG	1 cut(s)	1137
ErhI	CCWWGG	1 cut(s)	1137
FaeI	CATG	3 cut(s)	269, 683, 943
FaqI	GGGAC	1 cut(s)	29
FatI	CATG	3 cut(s)	265, 679, 939
FauI	CCCGC	1 cut(s)	24
FauNDI	CATATG	1 cut(s)	973
Fnu4HI	GCNGC	2 cut(s)	29, 486
FokI	GGATG	5 cut(s)	434, 494, 901, 1091, 1120
Fsp4HI	GCNGC	2 cut(s)	29, 486
FspBI	CTAG	4 cut(s)	84, 816, 842, 1004
GluI	GCNGC	2 cut(s)	29, 486
HaeIII	GGCC	4 cut(s)	120, 326, 570, 1037
Hin1II	CATG	3 cut(s)	269, 683, 943
HindIII	AAGCTT	1 cut(s)	654
HphI	GGTGA	2 cut(s)	567, 788
Hpy166II	GTNNAC	1 cut(s)	862
Hpy188III	TCNNGA	7 cut(s)	20, 301, 398, 465, 816, 940, 1167
Hpy8I	GTNNAC	1 cut(s)	862
HpyAV	CCTTC	6 cut(s)	305, 351, 611, 891, 989, 1173
HpyCH4III	ACNGT	4 cut(s)	66, 113, 407, 859
HpyCH4V	TGCA	2 cut(s)	460, 485
HpyF10VI	GCNNNNNNNGC	3 cut(s)	346, 706, 1130
HpyF3I	CTNAG	5 cut(s)	54, 76, 477, 714, 1209
Hsp92II	CATG	3 cut(s)	269, 683, 943
Kzo9I	GATC	2 cut(s)	394, 818
Lsp1109I	GCAGC	2 cut(s)	15, 497
LweI	GCATC	2 cut(s)	472, 1142
MaeI	CTAG	4 cut(s)	84, 816, 842, 1004
MaeIII	GTNAC	1 cut(s)	573
MalI	GATC	2 cut(s)	396, 820
MboI	GATC	2 cut(s)	394, 818
MboII	GAAGA	9 cut(s)	81, 272, 426, 518, 559, 601, 1040, 1103, 1162
MflI	RGATCY	1 cut(s)	818
MhlI	GDGCHC	1 cut(s)	711
MluCI	AATT	4 cut(s)	182, 221, 621, 669
MlyI	GAGTC	3 cut(s)	65, 440, 752
MroXI	GAANNNNTTC	1 cut(s)	947
MseI	TTAA	1 cut(s)	444
MspA1I	CMGCKG	2 cut(s)	488, 958
MspR9I	CCNGG	1 cut(s)	886
MvaI	CCWGG	1 cut(s)	886
MwoI	GCNNNNNNNGC	3 cut(s)	346, 706, 1130
NdeI	CATATG	1 cut(s)	973
NdeII	GATC	2 cut(s)	394, 818
NlaIII	CATG	3 cut(s)	269, 683, 943
NlaIV	GGNNCC	1 cut(s)	45
NmeAIII	GCCGAG	1 cut(s)	146
NmuCI	GTSAC	1 cut(s)	573
NspI	RCATGY	2 cut(s)	269, 683
PagI	TCATGA	1 cut(s)	939
PciI	ACATGT	2 cut(s)	265, 679
PcsI	WCGNNNNNNNCGW	1 cut(s)	374
PdmI	GAANNNNTTC	1 cut(s)	947
PfeI	GAWTC	8 cut(s)	80, 149, 297, 365, 389, 509, 812, 1022
PfoI	TCCNGGA	1 cut(s)	884
PkrI	GCNGC	2 cut(s)	30, 487
PleI	GAGTC	3 cut(s)	64, 439, 752
PpsI	GAGTC	3 cut(s)	64, 439, 752
PpuMI	RGGWCCY	1 cut(s)	43
PscI	ACATGT	2 cut(s)	265, 679
Psp5II	RGGWCCY	1 cut(s)	43
Psp6I	CCWGG	1 cut(s)	884
PspGI	CCWGG	1 cut(s)	884
PspN4I	GGNNCC	1 cut(s)	45
PspPI	GGNCC	2 cut(s)	43, 911
PspPPI	RGGWCCY	1 cut(s)	43
PstNI	CAGNNNCTG	1 cut(s)	392
PsuI	RGATCY	1 cut(s)	818
PvuII	CAGCTG	2 cut(s)	488, 958
RsaI	GTAC	3 cut(s)	63, 270, 730
RsaNI	GTAC	3 cut(s)	62, 269, 729
SaqAI	TTAA	1 cut(s)	444
SatI	GCNGC	2 cut(s)	29, 486
Sau3AI	GATC	2 cut(s)	394, 818
Sau96I	GGNCC	2 cut(s)	43, 911
ScaI	AGTACT	1 cut(s)	63
SchI	GAGTC	3 cut(s)	65, 440, 752
ScrFI	CCNGG	1 cut(s)	886
SduI	GDGCHC	1 cut(s)	711
SfaNI	GCATC	2 cut(s)	472, 1142
SfcI	CTRYAG	1 cut(s)	789
SinI	GGWCC	2 cut(s)	43, 911
Sse9I	AATT	4 cut(s)	182, 221, 621, 669
SsiI	CCGC	1 cut(s)	31
SspMI	CTAG	4 cut(s)	84, 816, 842, 1004
StyD4I	CCNGG	1 cut(s)	884
StyI	CCWWGG	1 cut(s)	1137
TaaI	ACNGT	4 cut(s)	66, 113, 407, 859
TasI	AATT	4 cut(s)	182, 221, 621, 669
TatI	WGTACW	1 cut(s)	61
TfiI	GAWTC	8 cut(s)	80, 149, 297, 365, 389, 509, 812, 1022
Tru1I	TTAA	1 cut(s)	444
Tru9I	TTAA	1 cut(s)	444
TscAI	CASTG	5 cut(s)	99, 118, 481, 508, 702
TseFI	GTSAC	1 cut(s)	573
TseI	GCWGC	2 cut(s)	28, 485
Tsp45I	GTSAC	1 cut(s)	573
TspDTI	ATGAA	4 cut(s)	183, 940, 956, 990
TspGWI	ACGGA	1 cut(s)	614
TspRI	CASTG	5 cut(s)	99, 118, 481, 508, 702
VpaK11BI	GGWCC	2 cut(s)	43, 911
XagI	CCTNNNNNAGG	1 cut(s)	1167
XapI	RAATTY	1 cut(s)	182
XbaI	TCTAGA	1 cut(s)	815
XceI	RCATGY	2 cut(s)	269, 683
XmnI	GAANNNNTTC	1 cut(s)	947
XspI	CTAG	4 cut(s)	84, 816, 842, 1004
ZrmI	AGTACT	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.