Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0003451

Physical Location & Seq

Genomic Coordinates Reverse (-)

69132776 .. 69136131

Gene Structure 3356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG436600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGAGCAGGGAGGGGTCTCCGGATTGGCTGCGCACTTTTCAGGTCCCAAAAACTGAGTCAGTACTGTCATTGTCCTCAGATTCTGAGTCTTCATTGAATGGACTTAATTCGGGGGAGGATAACAGTGATGGCCGAGAACTATCTCCTCATAAATCATCTGGATTCGATGAAGATGTTGATGATGATAATGAAGTTATCGGTAAATTTCTTGGGAAAAGTGTTGCAGGGTCTCCATCTGATAAGAGATTGAAAGGCAAGTCTCCGAAACAAGGGGAAAAAGTAGAAGAAGGTATACCCCAGAAAAAGAAGAAGTCAGACGGATCCAAGAAGAGAGAAGGTAAAACAAGGACCGTTGTTGAGAAGCCTTCAAAGACTCATGAACCGAATGATTCAGTTTTGGCGTTGTCATCAGATTCTGATCCTGAAAACAGCCCTCCCAGAGAGGATGGTATCCATGATGGAGAATCTTCTGACCTTAAAACGTCTCAACTGCAATCAATAGGTAACAGTGAGGATGCAGCTCTTATGGGCAGTAGTGAAGAGTCTCCATCTAAACAGGCTACAAAAGGAAAATCTTTGAAGAAAAGTCCAAAAGGAAAAGGCCAGTCACCCAAGAAAGAGAAGAAAAAGATAGATAGCAAAGAACAAGAAGGAATTTGTGGCGATGTGGAAGTGGCAGAGAAAGAAGCTTCTGACAAGCAGATTGAACCACGTGTATCCACCTCAACATTGCCGTTGGTGCTCTCTGAGAAAGTCCATCGTACAAAGGCACTTGTTGAGTGTGAAAAGGACTCCATAGATTTGAGTGGTGATATGGGTGCTGTAGGACGGGTAGTAGTTTCAGATTCTAGATCTGGGCATAGCGAGATGTGCTTAGATTTAAAAGGAACCATTTACAAAACAACGATAGTTCCTTCCAGGACATTTTGTGTTGTTAGCTTTGGACCGTCCGAGGCAAAGATAGAAGCTATCATGAATGACTTCATTCAGCTGAAACCAGAAACATATGAAGCGGAAACAATGGTTGAAGGAACACTAGAGGGTTTCTTATTTGATTCCGAAGATGAGGCTGACAAAGTTCCTAAAGCAACTCCTCATCAAACTGATAAAAATGAGGATACTGAAGAACAAACCAATGGGACAACCAAAGGGAAAGCTGACAAAGCATCGAGGGTTGTAAAGAAGAGAGATAAGCCTGCAGGAGGGAAGCCACAGCCACCAAAGAACGCAAGAAAGAAAACTCAAGTTTCCAAGAAGCCCAAGAACAAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008544 GO:0009058 GO:0009059 GO:0009330 GO:0009653 GO:0009888 GO:0009913 GO:0009987 GO:0010026 GO:0010090 GO:0016043 GO:0022402 GO:0022622 GO:0030154 GO:0030307 GO:0030855 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034641 GO:0034645 GO:0040008 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045927 GO:0046483 GO:0048364 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051128 GO:0051276 GO:0060429 GO:0065007 GO:0071704 GO:0071840 GO:0090304 GO:0090558 GO:0090626 GO:0097159 GO:0099402 GO:1901360 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

424

Amino Acids

45.96

Weight (kDa)

6.41

Isoelectric Point (pI)

50.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630
fragaria_vesca	FvH4_7g33320 FvH4_7g33320
malus_domestica	MD01G1231400.v1.1 MD07G1303400.v1.1
prunus_persica	Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1
pyrus_communis	pycom01g23940 pycom07g27630
rosa_chinensis	RchiOBHm_Chr1g0383301
rosa_laevigata	RLG00000026115
rosa_multiflora	Rmu_sc0007173.1_g000019 Rmu_sc0014196.1_g000003
rosa_roxburghii	Rroxscaffold_4G00277420
rosa_rugosa	Rorug01G0440400 Rorug01G0440400
rosa_samantha	Rh1AG466000 Rh1BG423400 Rh1CG436600 Rh1DG456100
rosa_wichuraiana	Rw1G040640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	32
AccI	GTMKAC	1 cut(s)	292
AccIII	TCCGGA	1 cut(s)	19
AciI	CCGC	1 cut(s)	1013
AclWI	GGATC	3 cut(s)	315, 328, 413
AcoI	YGGCCR	1 cut(s)	130
AcsI	RAATTY	2 cut(s)	203, 654
AcuI	CTGAAG	1 cut(s)	1143
AcvI	CACGTG	1 cut(s)	713
AfaI	GTAC	2 cut(s)	63, 763
AfiI	CCNNNNNNNGG	2 cut(s)	269, 1202
AflIII	ACRYGT	1 cut(s)	712
AgsI	TTSAA	6 cut(s)	97, 250, 369, 580, 707, 1028
AjnI	CCWGG	1 cut(s)	917
AluBI	AGCT	6 cut(s)	521, 689, 939, 968, 991, 1157
AluI	AGCT	6 cut(s)	521, 689, 939, 968, 991, 1157
Alw21I	GWGCWC	1 cut(s)	744
Alw26I	GTCTC	5 cut(s)	21, 234, 264, 489, 549
AlwI	GGATC	3 cut(s)	315, 328, 413
AlwNI	CAGNNNCTG	2 cut(s)	83, 416
Aor13HI	TCCGGA	1 cut(s)	19
AoxI	GGCC	2 cut(s)	130, 601
ApeKI	GCWGC	2 cut(s)	28, 518
ApoI	RAATTY	2 cut(s)	203, 654
ArsI	GACNNNNNNTTYG	2 cut(s)	41, 73
Asp700I	GAANNNNTTC	1 cut(s)	980
AspLEI	GCGC	1 cut(s)	33
AspS9I	GGNCC	3 cut(s)	43, 348, 944
AsuHPI	GGTGA	2 cut(s)	600, 821
AvaII	GGWCC	3 cut(s)	43, 348, 944
BamHI	GGATCC	1 cut(s)	320
BarI	GAAGNNNNNNTAC	2 cut(s)	276, 308
BbrPI	CACGTG	1 cut(s)	713
BbsI	GAAGAC	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	744
BbvI	GCAGC	2 cut(s)	15, 530
BccI	CCATC	6 cut(s)	122, 241, 440, 452, 556, 765
BceAI	ACGGC	1 cut(s)	718
BciT130I	CCWGG	1 cut(s)	919
BciVI	GTATCC	3 cut(s)	461, 727, 1111
BcoDI	GTCTC	5 cut(s)	21, 234, 264, 489, 549
BfaI	CTAG	2 cut(s)	849, 1037
BfmI	CTRYAG	2 cut(s)	822, 1197
BfuI	GTATCC	3 cut(s)	461, 727, 1111
BglII	AGATCT	1 cut(s)	851
BisI	GCNGC	2 cut(s)	29, 519
BlsI	GCNGC	2 cut(s)	30, 520
BmcAI	AGTACT	1 cut(s)	63
Bme1390I	CCNGG	1 cut(s)	919
Bme18I	GGWCC	3 cut(s)	43, 348, 944
BmgT120I	GGNCC	3 cut(s)	43, 348, 944
BmiI	GGNNCC	3 cut(s)	45, 322, 889
BmrFI	CCNGG	1 cut(s)	919
BmsI	GCATC	2 cut(s)	505, 1175
BpiI	GAAGAC	1 cut(s)	81
BpuEI	CTTGAG	1 cut(s)	1227
BsaAI	YACGTR	1 cut(s)	713
BsaBI	GATNNNNATC	1 cut(s)	417
BsaI	GGTCTC	2 cut(s)	21, 234
BsaJI	CCNNGG	1 cut(s)	951
BsaWI	WCCGGW	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	2 cut(s)	269, 1202
Bse1I	ACTGG	1 cut(s)	604
Bse3DI	GCAATG	1 cut(s)	728
Bse8I	GATNNNNATC	1 cut(s)	417
BseAI	TCCGGA	1 cut(s)	19
BseBI	CCWGG	1 cut(s)	919
BseDI	CCNNGG	1 cut(s)	951
BseGI	GGATG	2 cut(s)	451, 520
BseJI	GATNNNNATC	1 cut(s)	417
BseLI	CCNNNNNNNGG	2 cut(s)	269, 1202
BseMI	GCAATG	1 cut(s)	728
BseMII	CTCAG	4 cut(s)	45, 75, 90, 738
BseNI	ACTGG	1 cut(s)	604
BseRI	GAGGAG	2 cut(s)	135, 1083
BseXI	GCAGC	2 cut(s)	15, 530
BshFI	GGCC	2 cut(s)	132, 603
BsiHKAI	GWGCWC	1 cut(s)	744
BsiSI	CCGG	1 cut(s)	20
BslFI	GGGAC	2 cut(s)	29, 1153
BslI	CCNNNNNNNGG	2 cut(s)	269, 1202
BsmAI	GTCTC	5 cut(s)	21, 234, 264, 489, 549
BsmBI	CGTCTC	1 cut(s)	489
BsmFI	GGGAC	2 cut(s)	29, 1153
BsnI	GGCC	2 cut(s)	132, 603
Bso31I	GGTCTC	2 cut(s)	21, 234
Bsp1286I	GDGCHC	1 cut(s)	744
Bsp13I	TCCGGA	1 cut(s)	19
Bsp143I	GATC	3 cut(s)	320, 418, 851
BspACI	CCGC	1 cut(s)	1013
BspANI	GGCC	2 cut(s)	132, 603
BspCNI	CTCAG	4 cut(s)	46, 76, 89, 739
BspEI	TCCGGA	1 cut(s)	19
BspHI	TCATGA	2 cut(s)	376, 972
BspLI	GGNNCC	3 cut(s)	45, 322, 889
BspMAI	CTGCAG	1 cut(s)	1201
BspPI	GGATC	3 cut(s)	315, 328, 413
BspTNI	GGTCTC	2 cut(s)	21, 234
BsrDI	GCAATG	1 cut(s)	728
BsrI	ACTGG	1 cut(s)	604
BssECI	CCNNGG	1 cut(s)	951
BssMI	GATC	3 cut(s)	320, 418, 851
BssNAI	GTATAC	1 cut(s)	293
Bst1107I	GTATAC	1 cut(s)	293
Bst2UI	CCWGG	1 cut(s)	919
Bst4CI	ACNGT	5 cut(s)	66, 125, 352, 509, 948
Bst6I	CTCTTC	3 cut(s)	323, 534, 1178
BstBAI	YACGTR	1 cut(s)	713
BstC8I	GCNNGC	1 cut(s)	1197
BstDEI	CTNAG	5 cut(s)	54, 76, 84, 747, 874
BstENI	CCTNNNNNAGG	1 cut(s)	1200
BstF5I	GGATG	2 cut(s)	451, 520
BstHHI	GCGC	1 cut(s)	33
BstKTI	GATC	3 cut(s)	323, 421, 854
BstMAI	GTCTC	5 cut(s)	21, 234, 264, 489, 549
BstMBI	GATC	3 cut(s)	320, 418, 851
BstMWI	GCNNNNNNNGC	3 cut(s)	739, 870, 1163
BstNI	CCWGG	1 cut(s)	919
BstSCI	CCNGG	1 cut(s)	917
BstSFI	CTRYAG	2 cut(s)	822, 1197
BstV1I	GCAGC	2 cut(s)	15, 530
BstV2I	GAAGAC	1 cut(s)	81
BstX2I	RGATCY	2 cut(s)	320, 851
BstYI	RGATCY	2 cut(s)	320, 851
BstZ17I	GTATAC	1 cut(s)	293
BsuI	GTATCC	3 cut(s)	461, 727, 1111
BsuRI	GGCC	2 cut(s)	132, 603
BtgZI	GCGATG	1 cut(s)	678
BtsCI	GGATG	2 cut(s)	451, 520
BtsIMutI	CAGTG	2 cut(s)	130, 514
Cac8I	GCNNGC	1 cut(s)	1197
CaiI	CAGNNNCTG	2 cut(s)	83, 416
CciI	TCATGA	2 cut(s)	376, 972
CfoI	GCGC	1 cut(s)	33
Cfr13I	GGNCC	3 cut(s)	43, 348, 944
Csp6I	GTAC	2 cut(s)	62, 762
CviAII	CATG	3 cut(s)	377, 455, 973
CviQI	GTAC	2 cut(s)	62, 762
DdeI	CTNAG	5 cut(s)	54, 76, 84, 747, 874
DpnI	GATC	3 cut(s)	322, 420, 853
DpnII	GATC	3 cut(s)	320, 418, 851
DraI	TTTAAA	1 cut(s)	882
EaeI	YGGCCR	1 cut(s)	130
Eam1104I	CTCTTC	3 cut(s)	323, 534, 1178
EarI	CTCTTC	3 cut(s)	323, 534, 1178
Eco31I	GGTCTC	2 cut(s)	21, 234
Eco47I	GGWCC	3 cut(s)	43, 348, 944
Eco57I	CTGAAG	1 cut(s)	1143
Eco72I	CACGTG	1 cut(s)	713
EcoNI	CCTNNNNNAGG	1 cut(s)	1200
EcoO109I	RGGNCCY	1 cut(s)	43
EcoRII	CCWGG	1 cut(s)	917
Esp3I	CGTCTC	1 cut(s)	489
FaeI	CATG	3 cut(s)	380, 458, 976
FaqI	GGGAC	2 cut(s)	29, 1153
FatI	CATG	3 cut(s)	376, 454, 972
FauNDI	CATATG	1 cut(s)	1006
FblI	GTMKAC	1 cut(s)	292
Fnu4HI	GCNGC	2 cut(s)	29, 519
FokI	GGATG	2 cut(s)	458, 527
Fsp4HI	GCNGC	2 cut(s)	29, 519
FspBI	CTAG	2 cut(s)	849, 1037
FspI	TGCGCA	1 cut(s)	32
GlaI	GCGC	1 cut(s)	32
GluI	GCNGC	2 cut(s)	29, 519
HaeIII	GGCC	2 cut(s)	132, 603
HapII	CCGG	1 cut(s)	20
HhaI	GCGC	1 cut(s)	33
Hin1II	CATG	3 cut(s)	380, 458, 976
Hin6I	GCGC	1 cut(s)	31
HinP1I	GCGC	1 cut(s)	31
HindIII	AAGCTT	1 cut(s)	687
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	2 cut(s)	600, 821
Hpy166II	GTNNAC	1 cut(s)	293
Hpy188III	TCNNGA	6 cut(s)	20, 159, 377, 422, 849, 973
Hpy8I	GTNNAC	1 cut(s)	293
HpyAV	CCTTC	6 cut(s)	281, 329, 375, 644, 924, 1022
HpyCH4III	ACNGT	5 cut(s)	66, 125, 352, 509, 948
HpyCH4IV	ACGT	2 cut(s)	482, 712
HpyCH4V	TGCA	4 cut(s)	224, 493, 518, 1199
HpyF10VI	GCNNNNNNNGC	3 cut(s)	739, 870, 1163
HpyF3I	CTNAG	5 cut(s)	54, 76, 84, 747, 874
HpySE526I	ACGT	2 cut(s)	482, 712
Hsp92II	CATG	3 cut(s)	380, 458, 976
HspAI	GCGC	1 cut(s)	31
Kpn2I	TCCGGA	1 cut(s)	19
Kzo9I	GATC	3 cut(s)	320, 418, 851
Lsp1109I	GCAGC	2 cut(s)	15, 530
LweI	GCATC	2 cut(s)	505, 1175
MaeI	CTAG	2 cut(s)	849, 1037
MaeII	ACGT	2 cut(s)	482, 712
MaeIII	GTNAC	2 cut(s)	503, 606
MalI	GATC	3 cut(s)	322, 420, 853
MboI	GATC	3 cut(s)	320, 418, 851
MflI	RGATCY	2 cut(s)	320, 851
MhlI	GDGCHC	1 cut(s)	744
MluCI	AATT	3 cut(s)	106, 203, 654
MlyI	GAGTC	5 cut(s)	65, 95, 367, 551, 785
MroI	TCCGGA	1 cut(s)	19
MroXI	GAANNNNTTC	1 cut(s)	980
MseI	TTAA	3 cut(s)	105, 477, 881
MspA1I	CMGCKG	1 cut(s)	991
MspI	CCGG	1 cut(s)	20
MspR9I	CCNGG	1 cut(s)	919
MvaI	CCWGG	1 cut(s)	919
MwoI	GCNNNNNNNGC	3 cut(s)	739, 870, 1163
NdeI	CATATG	1 cut(s)	1006
NdeII	GATC	3 cut(s)	320, 418, 851
NlaIII	CATG	3 cut(s)	380, 458, 976
NlaIV	GGNNCC	3 cut(s)	45, 322, 889
NmeAIII	GCCGAG	1 cut(s)	158
NmuCI	GTSAC	1 cut(s)	606
NsbI	TGCGCA	1 cut(s)	32
PagI	TCATGA	2 cut(s)	376, 972
PdmI	GAANNNNTTC	1 cut(s)	980
PfeI	GAWTC	7 cut(s)	80, 162, 389, 413, 464, 845, 1055
PfoI	TCCNGGA	1 cut(s)	917
PkrI	GCNGC	2 cut(s)	30, 520
PleI	GAGTC	5 cut(s)	64, 94, 367, 550, 785
PmaCI	CACGTG	1 cut(s)	713
PmlI	CACGTG	1 cut(s)	713
PpsI	GAGTC	5 cut(s)	64, 94, 367, 550, 785
Ppu21I	YACGTR	1 cut(s)	713
PpuMI	RGGWCCY	1 cut(s)	43
Psp5II	RGGWCCY	1 cut(s)	43
Psp6I	CCWGG	1 cut(s)	917
PspCI	CACGTG	1 cut(s)	713
PspGI	CCWGG	1 cut(s)	917
PspN4I	GGNNCC	3 cut(s)	45, 322, 889
PspPI	GGNCC	3 cut(s)	43, 348, 944
PspPPI	RGGWCCY	1 cut(s)	43
PstI	CTGCAG	1 cut(s)	1201
PstNI	CAGNNNCTG	2 cut(s)	83, 416
PsuI	RGATCY	2 cut(s)	320, 851
PvuII	CAGCTG	1 cut(s)	991
RsaI	GTAC	2 cut(s)	63, 763
RsaNI	GTAC	2 cut(s)	62, 762
SaqAI	TTAA	3 cut(s)	105, 477, 881
SatI	GCNGC	2 cut(s)	29, 519
Sau3AI	GATC	3 cut(s)	320, 418, 851
Sau96I	GGNCC	3 cut(s)	43, 348, 944
SbfI	CCTGCAGG	1 cut(s)	1201
ScaI	AGTACT	1 cut(s)	63
SchI	GAGTC	5 cut(s)	65, 95, 367, 551, 785
ScrFI	CCNGG	1 cut(s)	919
SdaI	CCTGCAGG	1 cut(s)	1201
SduI	GDGCHC	1 cut(s)	744
SfaNI	GCATC	2 cut(s)	505, 1175
SfcI	CTRYAG	2 cut(s)	822, 1197
SinI	GGWCC	3 cut(s)	43, 348, 944
SmlI	CTYRAG	1 cut(s)	1242
SmoI	CTYRAG	1 cut(s)	1242
Sse8387I	CCTGCAGG	1 cut(s)	1201
Sse9I	AATT	3 cut(s)	106, 203, 654
SsiI	CCGC	1 cut(s)	1013
SspMI	CTAG	2 cut(s)	849, 1037
StyD4I	CCNGG	1 cut(s)	917
TaaI	ACNGT	5 cut(s)	66, 125, 352, 509, 948
TaiI	ACGT	2 cut(s)	485, 715
TaqI	TCGA	2 cut(s)	165, 1169
TasI	AATT	3 cut(s)	106, 203, 654
TatI	WGTACW	1 cut(s)	61
TfiI	GAWTC	7 cut(s)	80, 162, 389, 413, 464, 845, 1055
Tru1I	TTAA	3 cut(s)	105, 477, 881
Tru9I	TTAA	3 cut(s)	105, 477, 881
TscAI	CASTG	2 cut(s)	130, 514
TseFI	GTSAC	1 cut(s)	606
TseI	GCWGC	2 cut(s)	28, 518
Tsp45I	GTSAC	1 cut(s)	606
TspDTI	ATGAA	7 cut(s)	81, 183, 204, 393, 973, 989, 1023
TspGWI	ACGGA	1 cut(s)	333
TspRI	CASTG	2 cut(s)	130, 514
VpaK11BI	GGWCC	3 cut(s)	43, 348, 944
XagI	CCTNNNNNAGG	1 cut(s)	1200
XapI	RAATTY	2 cut(s)	203, 654
XbaI	TCTAGA	1 cut(s)	848
XmiI	GTMKAC	1 cut(s)	292
XmnI	GAANNNNTTC	1 cut(s)	980
XspI	CTAG	2 cut(s)	849, 1037
ZrmI	AGTACT	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.