Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003451

Physical Location & Seq

Genomic Coordinates Reverse (-)

8432384 .. 8436193

Gene Structure 3810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G24630.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

ATGAGCAGCAGCTCTAGAGAGGGATCTCCAGATTGGCTTCGCTCTTACGAGGCACCCATGACTACTTCATTGTTGTCGCTATCATCTTCAGATGATGATAGTCCTTATAGGGAATCTGAAGTCATTTCGTCTCTTCCTTTGCCTGATGATGACGGTGACGACATTGTGGTTCTTGAGACAGAATCTGTGGAGTTACTGACTAGGAAGAATTCCGAAACGAAGGTTGTGACGAAGCAAGTGAGTATCGAGCAGGTGTTTTCTAGAAAGAAGAAAGCAGATGCTAGTCTCAACCTTGAAGGGAAGGAGAATGGAAACAACGTTGACTGTGAAAAACTCTCTAGCAAGCATAAGGATGCTCAACAGGGAGGAGCTGATTCTGTATGGCTTGTCTCATCTGATTCTGAGCCATCCTCTCCTATAAAGCAGGAAGTGACTGTGTCAACTGAAAAGGATGCGGATTTTGTTCTTGAAGCTACAGAGGAAGAACCAGCAGTTAAGACAGTTCGAAAGGAAAAATCTCCAAAAACAAAGTCAAAAAGCAGTCGCAAGACACCCAAGGAAGGAAATAGTGCACAGGAAATTTTAAAAACTGAAGATAAAGATACAGATACCACTATAGCCGAGCAAGTAACACCGGAAAAATCTCCAAAAACAAAGTCAAAAAGCAGTCGCAAGACACCCAAGGAAGAAAATTGTGCACAAGAAATTTTAAAAACTGAAGATAAAGATAAAGATACAGATACAGATACCATTATAGCCGAGGAAGTAACAACGGATCAGAAGATCAAGCCTTCTTCTGGCTCAAGTTCAAGATTGCCTTTGGTACTTTCTGAGAAGGTTAATCGTACAAAGGTACTCGTTGAATGTGAAGGTGACTCGATAGATTTGAGTGGAGACATGGGGGCTGTTGGACGCGTGGTTGTTTCAGACACAACCGGGGACATGTACTTGGACTTGAAAGGAACCATATATAAATCAACAATCATTCCATCCAGAACATTTTGCGTTGTTAACGTAGGTCAGACAGAGGCTAAGATTGAAGCTATTATGAATGACTTCATACAGCTGATACCACAATCTAATGTCTACGAGGCAGAAACAATGGTGGAAGGCACTCTGGAAGGATTTACGTTCGAATCAGATGATGAAAGTAACAAAAACGCCAAGACTGCTGTAAAGCCAGCTGATCAAAGTGTAGGCACAGAGGAAGAAACCAACACAAAAGCCAAACCCAAAGCCAAAGCAAAAGGCGAAACTGTTATAGGAAAAAAGAGAGGAAGACCATCTAAAGAGAAGCAGCCACCAGCAAAGAAGGCTAGAAATTCTGCCCCTAAGAAGCCAAAAGCCAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008544 GO:0009058 GO:0009059 GO:0009330 GO:0009653 GO:0009888 GO:0009913 GO:0009987 GO:0010026 GO:0010090 GO:0016043 GO:0022402 GO:0022622 GO:0030154 GO:0030307 GO:0030855 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034641 GO:0034645 GO:0040008 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045927 GO:0046483 GO:0048364 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051128 GO:0051276 GO:0060429 GO:0065007 GO:0071704 GO:0071840 GO:0090304 GO:0090558 GO:0090626 GO:0097159 GO:0099402 GO:1901360 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

451

Amino Acids

49.24

Weight (kDa)

5.21

Isoelectric Point (pI)

47.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630
fragaria_vesca	FvH4_7g33320 FvH4_7g33320
malus_domestica	MD01G1231400.v1.1 MD07G1303400.v1.1
prunus_persica	Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1
pyrus_communis	pycom01g23940 pycom07g27630
rosa_chinensis	RchiOBHm_Chr1g0383301
rosa_laevigata	RLG00000026115
rosa_multiflora	Rmu_sc0007173.1_g000019 Rmu_sc0014196.1_g000003
rosa_roxburghii	Rroxscaffold_4G00277420
rosa_rugosa	Rorug01G0440400 Rorug01G0440400
rosa_samantha	Rh1AG466000 Rh1BG423400 Rh1CG436600 Rh1DG456100
rosa_wichuraiana	Rw1G040640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	241
Acc36I	ACCTGC	1 cut(s)	241
AccB1I	GGYRCC	1 cut(s)	52
AccI	GTMKAC	1 cut(s)	1086
AccII	CGCG	1 cut(s)	915
AciI	CCGC	1 cut(s)	455
AclI	AACGTT	1 cut(s)	318
AclWI	GGATC	2 cut(s)	31, 783
AcsI	RAATTY	4 cut(s)	208, 579, 705, 1321
AcuI	CTGAAG	4 cut(s)	72, 138, 612, 738
AfaI	GTAC	4 cut(s)	825, 847, 855, 947
AfiI	CCNNNNNNNGG	2 cut(s)	560, 797
AflIII	ACRYGT	2 cut(s)	913, 942
AgsI	TTSAA	6 cut(s)	296, 470, 810, 863, 958, 1040
AluBI	AGCT	6 cut(s)	12, 371, 473, 1043, 1066, 1184
AluI	AGCT	6 cut(s)	12, 371, 473, 1043, 1066, 1184
Alw21I	GWGCWC	2 cut(s)	574, 700
Alw26I	GTCTC	5 cut(s)	135, 170, 290, 394, 888
Alw44I	GTGCAC	2 cut(s)	570, 696
AlwI	GGATC	2 cut(s)	31, 783
AlwNI	CAGNNNCTG	1 cut(s)	185
ApaLI	GTGCAC	2 cut(s)	570, 696
ApeKI	GCWGC	3 cut(s)	6, 9, 1297
ApoI	RAATTY	4 cut(s)	208, 579, 705, 1321
ArsI	GACNNNNNNTTYG	4 cut(s)	515, 547, 641, 673
Asp700I	GAANNNNTTC	1 cut(s)	1055
AsuC2I	CCSGG	1 cut(s)	937
AsuHPI	GGTGA	2 cut(s)	167, 884
AsuII	TTCGAA	2 cut(s)	505, 1134
BaeGI	GKGCMC	2 cut(s)	574, 700
BanI	GGYRCC	1 cut(s)	52
BbsI	GAAGAC	1 cut(s)	1285
Bbv12I	GWGCWC	2 cut(s)	574, 700
BbvI	GCAGC	3 cut(s)	18, 21, 1309
BccI	CCATC	3 cut(s)	415, 997, 1291
BclI	TGATCA	1 cut(s)	1186
BcnI	CCSGG	1 cut(s)	937
BcoDI	GTCTC	5 cut(s)	135, 170, 290, 394, 888
BfaI	CTAG	6 cut(s)	15, 201, 261, 282, 339, 1317
BfmI	CTRYAG	2 cut(s)	474, 615
BfuAI	ACCTGC	1 cut(s)	241
BisI	GCNGC	3 cut(s)	7, 10, 1298
BlsI	GCNGC	3 cut(s)	8, 11, 1299
Bme1390I	CCNGG	1 cut(s)	937
BmiI	GGNNCC	2 cut(s)	54, 964
BmrFI	CCNGG	1 cut(s)	937
BmsI	GCATC	3 cut(s)	268, 343, 442
BpiI	GAAGAC	1 cut(s)	1285
BplI	GAGNNNNNCTC	2 cut(s)	395, 427
BpmI	CTGGAG	1 cut(s)	12
Bpu14I	TTCGAA	2 cut(s)	505, 1134
BpuEI	CTTGAG	2 cut(s)	194, 787
BpuMI	CCSGG	1 cut(s)	937
BsaJI	CCNNGG	4 cut(s)	555, 681, 759, 936
BsaWI	WCCGGW	1 cut(s)	634
Bsc4I	CCNNNNNNNGG	2 cut(s)	560, 797
BseDI	CCNNGG	4 cut(s)	555, 681, 759, 936
BseGI	GGATG	4 cut(s)	358, 407, 457, 989
BseLI	CCNNNNNNNGG	2 cut(s)	560, 797
BseMII	CTCAG	2 cut(s)	393, 822
BseRI	GAGGAG	1 cut(s)	381
BseSI	GKGCMC	2 cut(s)	574, 700
BseXI	GCAGC	3 cut(s)	18, 21, 1309
Bsh1236I	CGCG	1 cut(s)	915
BshNI	GGYRCC	1 cut(s)	52
BsiHKAI	GWGCWC	2 cut(s)	574, 700
BsiSI	CCGG	2 cut(s)	635, 936
BslFI	GGGAC	1 cut(s)	953
BslI	CCNNNNNNNGG	2 cut(s)	560, 797
BsmAI	GTCTC	5 cut(s)	135, 170, 290, 394, 888
BsmBI	CGTCTC	1 cut(s)	135
BsmFI	GGGAC	1 cut(s)	953
Bsp119I	TTCGAA	2 cut(s)	505, 1134
Bsp1286I	GDGCHC	2 cut(s)	574, 700
Bsp143I	GATC	4 cut(s)	23, 775, 783, 1186
BspACI	CCGC	1 cut(s)	455
BspCNI	CTCAG	2 cut(s)	394, 823
BspFNI	CGCG	1 cut(s)	915
BspLI	GGNNCC	2 cut(s)	54, 964
BspMI	ACCTGC	1 cut(s)	241
BspPI	GGATC	2 cut(s)	31, 783
BspT104I	TTCGAA	2 cut(s)	505, 1134
BspT107I	GGYRCC	1 cut(s)	52
BssECI	CCNNGG	4 cut(s)	555, 681, 759, 936
BssMI	GATC	4 cut(s)	23, 775, 783, 1186
BssT1I	CCWWGG	2 cut(s)	555, 681
Bst4CI	ACNGT	5 cut(s)	155, 326, 436, 502, 1258
Bst6I	CTCTTC	1 cut(s)	138
BstBI	TTCGAA	2 cut(s)	505, 1134
BstC8I	GCNNGC	2 cut(s)	344, 1182
BstDEI	CTNAG	4 cut(s)	402, 831, 1032, 1332
BstF5I	GGATG	4 cut(s)	358, 407, 457, 989
BstFNI	CGCG	1 cut(s)	915
BstKTI	GATC	4 cut(s)	26, 778, 786, 1189
BstMAI	GTCTC	5 cut(s)	135, 170, 290, 394, 888
BstMBI	GATC	4 cut(s)	23, 775, 783, 1186
BstMWI	GCNNNNNNNGC	2 cut(s)	1169, 1313
BstNSI	RCATGY	1 cut(s)	946
BstSCI	CCNGG	1 cut(s)	935
BstSFI	CTRYAG	2 cut(s)	474, 615
BstSLI	GKGCMC	2 cut(s)	574, 700
BstUI	CGCG	1 cut(s)	915
BstV1I	GCAGC	3 cut(s)	18, 21, 1309
BstV2I	GAAGAC	1 cut(s)	1285
BstX2I	RGATCY	1 cut(s)	23
BstYI	RGATCY	1 cut(s)	23
BtsCI	GGATG	4 cut(s)	358, 407, 457, 989
BveI	ACCTGC	1 cut(s)	241
Cac8I	GCNNGC	2 cut(s)	344, 1182
CaiI	CAGNNNCTG	1 cut(s)	185
CseI	GACGC	1 cut(s)	921
Csp6I	GTAC	4 cut(s)	824, 846, 854, 946
CviAII	CATG	3 cut(s)	58, 898, 943
CviQI	GTAC	4 cut(s)	824, 846, 854, 946
DdeI	CTNAG	4 cut(s)	402, 831, 1032, 1332
DpnI	GATC	4 cut(s)	25, 777, 785, 1188
DpnII	GATC	4 cut(s)	23, 775, 783, 1186
DraI	TTTAAA	2 cut(s)	585, 711
Eam1104I	CTCTTC	1 cut(s)	138
EarI	CTCTTC	1 cut(s)	138
Eco130I	CCWWGG	2 cut(s)	555, 681
Eco57I	CTGAAG	4 cut(s)	72, 138, 612, 738
EcoRI	GAATTC	1 cut(s)	208
EcoT14I	CCWWGG	2 cut(s)	555, 681
ErhI	CCWWGG	2 cut(s)	555, 681
Esp3I	CGTCTC	1 cut(s)	135
FaeI	CATG	3 cut(s)	61, 901, 946
FalI	AAGNNNNNCTT	2 cut(s)	802, 834
FaqI	GGGAC	1 cut(s)	953
FatI	CATG	3 cut(s)	57, 897, 942
FbaI	TGATCA	1 cut(s)	1186
FblI	GTMKAC	1 cut(s)	1086
Fnu4HI	GCNGC	3 cut(s)	7, 10, 1298
FokI	GGATG	4 cut(s)	365, 394, 464, 976
Fsp4HI	GCNGC	3 cut(s)	7, 10, 1298
FspBI	CTAG	6 cut(s)	15, 201, 261, 282, 339, 1317
GluI	GCNGC	3 cut(s)	7, 10, 1298
GsuI	CTGGAG	1 cut(s)	12
HapII	CCGG	2 cut(s)	635, 936
HgaI	GACGC	1 cut(s)	921
Hin1II	CATG	3 cut(s)	61, 901, 946
HincII	GTYRAC	3 cut(s)	322, 441, 1012
HindII	GTYRAC	3 cut(s)	322, 441, 1012
HinfI	GANTC	6 cut(s)	113, 182, 374, 398, 875, 1136
HpaI	GTTAAC	1 cut(s)	1012
HpaII	CCGG	2 cut(s)	635, 936
HphI	GGTGA	2 cut(s)	167, 884
Hpy166II	GTNNAC	6 cut(s)	322, 441, 572, 698, 1012, 1087
Hpy188III	TCNNGA	8 cut(s)	15, 29, 173, 261, 467, 810, 993, 1118
Hpy8I	GTNNAC	6 cut(s)	322, 441, 572, 698, 1012, 1087
HpyCH4III	ACNGT	5 cut(s)	155, 326, 436, 502, 1258
HpyCH4IV	ACGT	3 cut(s)	318, 1014, 1130
HpyCH4V	TGCA	2 cut(s)	572, 698
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1169, 1313
HpyF3I	CTNAG	4 cut(s)	402, 831, 1032, 1332
HpySE526I	ACGT	3 cut(s)	318, 1014, 1130
Hsp92II	CATG	3 cut(s)	61, 901, 946
Ksp22I	TGATCA	1 cut(s)	1186
KspAI	GTTAAC	1 cut(s)	1012
Kzo9I	GATC	4 cut(s)	23, 775, 783, 1186
LmnI	GCTCC	1 cut(s)	368
Lsp1109I	GCAGC	3 cut(s)	18, 21, 1309
LweI	GCATC	3 cut(s)	268, 343, 442
MaeI	CTAG	6 cut(s)	15, 201, 261, 282, 339, 1317
MaeII	ACGT	3 cut(s)	318, 1014, 1130
MaeIII	GTNAC	8 cut(s)	155, 192, 226, 430, 628, 766, 872, 1151
MalI	GATC	4 cut(s)	25, 777, 785, 1188
MboI	GATC	4 cut(s)	23, 775, 783, 1186
MflI	RGATCY	1 cut(s)	23
MhlI	GDGCHC	2 cut(s)	574, 700
MluCI	AATT	5 cut(s)	208, 579, 691, 705, 1321
MluI	ACGCGT	1 cut(s)	913
MlyI	GAGTC	1 cut(s)	869
MmeI	TCCRAC	1 cut(s)	889
MroXI	GAANNNNTTC	1 cut(s)	1055
MseI	TTAA	5 cut(s)	495, 584, 710, 840, 1011
MslI	CAYNNNNRTG	1 cut(s)	351
MspA1I	CMGCKG	2 cut(s)	1066, 1184
MspI	CCGG	2 cut(s)	635, 936
MspR9I	CCNGG	1 cut(s)	937
MvnI	CGCG	1 cut(s)	915
MwoI	GCNNNNNNNGC	2 cut(s)	1169, 1313
NciI	CCSGG	1 cut(s)	937
NdeII	GATC	4 cut(s)	23, 775, 783, 1186
NlaIII	CATG	3 cut(s)	61, 901, 946
NlaIV	GGNNCC	2 cut(s)	54, 964
NmeAIII	GCCGAG	2 cut(s)	646, 784
NmuCI	GTSAC	4 cut(s)	155, 226, 430, 872
NspI	RCATGY	1 cut(s)	946
NspV	TTCGAA	2 cut(s)	505, 1134
PaqCI	CACCTGC	1 cut(s)	241
PciI	ACATGT	1 cut(s)	942
PdmI	GAANNNNTTC	1 cut(s)	1055
PfeI	GAWTC	5 cut(s)	113, 182, 374, 398, 1136
PflFI	GACNNNGTC	1 cut(s)	436
PkrI	GCNGC	3 cut(s)	8, 11, 1299
PleI	GAGTC	1 cut(s)	869
PpsI	GAGTC	1 cut(s)	869
PscI	ACATGT	1 cut(s)	942
Psp1406I	AACGTT	1 cut(s)	318
PspN4I	GGNNCC	2 cut(s)	54, 964
PstNI	CAGNNNCTG	1 cut(s)	185
PsuI	RGATCY	1 cut(s)	23
PsyI	GACNNNGTC	1 cut(s)	436
PvuII	CAGCTG	2 cut(s)	1066, 1184
RsaI	GTAC	4 cut(s)	825, 847, 855, 947
RsaNI	GTAC	4 cut(s)	824, 846, 854, 946
RseI	CAYNNNNRTG	1 cut(s)	351
SaqAI	TTAA	5 cut(s)	495, 584, 710, 840, 1011
SatI	GCNGC	3 cut(s)	7, 10, 1298
Sau3AI	GATC	4 cut(s)	23, 775, 783, 1186
SchI	GAGTC	1 cut(s)	869
ScrFI	CCNGG	1 cut(s)	937
SduI	GDGCHC	2 cut(s)	574, 700
SfaNI	GCATC	3 cut(s)	268, 343, 442
SfcI	CTRYAG	2 cut(s)	474, 615
SfuI	TTCGAA	2 cut(s)	505, 1134
SmiMI	CAYNNNNRTG	1 cut(s)	351
SmlI	CTYRAG	2 cut(s)	173, 802
SmoI	CTYRAG	2 cut(s)	173, 802
Sse9I	AATT	5 cut(s)	208, 579, 691, 705, 1321
SsiI	CCGC	1 cut(s)	455
SspMI	CTAG	6 cut(s)	15, 201, 261, 282, 339, 1317
StyD4I	CCNGG	1 cut(s)	935
StyI	CCWWGG	2 cut(s)	555, 681
TaaI	ACNGT	5 cut(s)	155, 326, 436, 502, 1258
TaiI	ACGT	3 cut(s)	321, 1017, 1133
TaqI	TCGA	4 cut(s)	246, 505, 878, 1134
TasI	AATT	5 cut(s)	208, 579, 691, 705, 1321
TatI	WGTACW	1 cut(s)	945
TfiI	GAWTC	5 cut(s)	113, 182, 374, 398, 1136
Tru1I	TTAA	5 cut(s)	495, 584, 710, 840, 1011
Tru9I	TTAA	5 cut(s)	495, 584, 710, 840, 1011
TseFI	GTSAC	4 cut(s)	155, 226, 430, 872
TseI	GCWGC	3 cut(s)	6, 9, 1297
Tsp45I	GTSAC	4 cut(s)	155, 226, 430, 872
TspDTI	ATGAA	4 cut(s)	57, 1048, 1064, 1161
TspGWI	ACGGA	1 cut(s)	788
Tth111I	GACNNNGTC	1 cut(s)	436
VneI	GTGCAC	2 cut(s)	570, 696
XapI	RAATTY	4 cut(s)	208, 579, 705, 1321
XbaI	TCTAGA	2 cut(s)	14, 260
XceI	RCATGY	1 cut(s)	946
XmiI	GTMKAC	1 cut(s)	1086
XmnI	GAANNNNTTC	1 cut(s)	1055
XspI	CTAG	6 cut(s)	15, 201, 261, 282, 339, 1317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.