Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0003451

Physical Location & Seq

Genomic Coordinates Reverse (-)

68083389 .. 68086758

Gene Structure 3370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG466000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGAGCAGGGAGGGGTCTCCGGATTGGCTGCGCACTTTTCAGGTCCCAAAAACTGAGTCAGTACTGTCATTGTCCTCAGATTCTGAGTCGTCATTGAATGGACTTAATTCGGGGGAGGATAACAGTGATGGCCGAGAACTATCTCCTCATAAATCATCTGGATTCGATGAAGATGTTGATGATGATGATGATGATGAAGTTATCGGTAAATTTCTTGGGAAAAGTGTTGCAGGGTCTCCATCTGATAAGAGATTGAAAGGCAAGTCTCCGAAACGAGGGGAAAAAGTAGAAGAAGATATACCCCAGAAAAAGAAGAAGTCAGACGGATCCAAGAAGAGAGAAGGTAAAACAAGGACCGTTGTTGAGAAGCCTTCAAAGACTCATGAACCGAATGATTCAGTTTTGGCGTTGTCATCAGATTCTGATCCTGAAAACAGTCCTCCCAGAGAGGATGGTATCCATGATGGAGAATCTTCTGACCTTAAAACGTCTCAACTGCAATCAATAGGTAACAGTGAGGATGCAGCTCTTATGGGCAGTAGTGAAGAGTCTCCATCTAAACAGGCTACAAAAGGAAAATCTTTGAAGAAAAGTCCAAAAGGAAAAGGCCAGTCACCCAAGAAAGAGAAGAAAAAGATAGATAGCAAAGAAAAAGAAGGAATTTGTGGCGATGTGGAAGTGGCAGAGAAAGAAGCTTCTGACAAGCAGATTGAACCACGTGTATCCACCTCAACATTGCCGTTGGTGCTCTCTGAGAAAGTCCATCGTACAAAGGCACTTGTTGAGTGTGAAAAGGACTCCATAGATTTGAGTGGTGATATGGGTGCTGTAGGACGGGTAGTAGTTTCAGATTCTAGATCTGGGCATAGCGAGATGTGCTTAGATTTAAAAGGAACCATTTACAAAACAACGATAGTTCCTTCCAGGACATTTTGTGTTGTTAGCTTTGGACCGTCCGAGGCAAAGATAGAAGCTATCATGAATGACTTCATTCAGCTGAAACCAGAAACATATGAAGCTGAAACAATGGTTGAAGGAACACTAGAGGGTTTCTTATTTGATTCCGAAGATGAGGCTGACAAAGTTCCTAAAGCAACTCCTCATCAAACTGATAAGAATGAGGATACTGAAGAACAAACCAATGGGACAACCAAAGGGAAAGCTGACAAGGCATCGAGGGTTGTAAAGAAGAGAGATAAGCCTGCAGGAGGGAAGCCACAGCCACCAAAGAAAGCAAGAAAGAAAACTCAAGTTTCCAAGAAGCCCAAGAACAAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008544 GO:0009058 GO:0009059 GO:0009330 GO:0009653 GO:0009888 GO:0009913 GO:0009987 GO:0010026 GO:0010090 GO:0016043 GO:0022402 GO:0022622 GO:0030154 GO:0030307 GO:0030855 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034641 GO:0034645 GO:0040008 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045927 GO:0046483 GO:0048364 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051128 GO:0051276 GO:0060429 GO:0065007 GO:0071704 GO:0071840 GO:0090304 GO:0090558 GO:0090626 GO:0097159 GO:0099402 GO:1901360 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

426

Amino Acids

46.29

Weight (kDa)

6.22

Isoelectric Point (pI)

49.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630
fragaria_vesca	FvH4_7g33320 FvH4_7g33320
malus_domestica	MD01G1231400.v1.1 MD07G1303400.v1.1
prunus_persica	Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1
pyrus_communis	pycom01g23940 pycom07g27630
rosa_chinensis	RchiOBHm_Chr1g0383301
rosa_laevigata	RLG00000026115
rosa_multiflora	Rmu_sc0007173.1_g000019 Rmu_sc0014196.1_g000003
rosa_roxburghii	Rroxscaffold_4G00277420
rosa_rugosa	Rorug01G0440400 Rorug01G0440400
rosa_samantha	Rh1AG466000 Rh1BG423400 Rh1CG436600 Rh1DG456100
rosa_wichuraiana	Rw1G040640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	32
AccIII	TCCGGA	1 cut(s)	19
AclWI	GGATC	3 cut(s)	321, 334, 419
AcoI	YGGCCR	1 cut(s)	130
AcsI	RAATTY	2 cut(s)	209, 660
AcuI	CTGAAG	1 cut(s)	1149
AcvI	CACGTG	1 cut(s)	719
AfaI	GTAC	2 cut(s)	63, 769
AfiI	CCNNNNNNNGG	2 cut(s)	275, 1208
AflIII	ACRYGT	1 cut(s)	718
AgsI	TTSAA	6 cut(s)	97, 256, 375, 586, 713, 1034
AjnI	CCWGG	1 cut(s)	923
AluBI	AGCT	7 cut(s)	527, 695, 945, 974, 997, 1019, 1163
AluI	AGCT	7 cut(s)	527, 695, 945, 974, 997, 1019, 1163
Alw21I	GWGCWC	1 cut(s)	750
Alw26I	GTCTC	5 cut(s)	21, 240, 270, 495, 555
AlwI	GGATC	3 cut(s)	321, 334, 419
AlwNI	CAGNNNCTG	2 cut(s)	83, 422
Aor13HI	TCCGGA	1 cut(s)	19
AoxI	GGCC	2 cut(s)	130, 607
ApeKI	GCWGC	2 cut(s)	28, 524
ApoI	RAATTY	2 cut(s)	209, 660
ArsI	GACNNNNNNTTYG	2 cut(s)	41, 73
Asp700I	GAANNNNTTC	1 cut(s)	986
AspLEI	GCGC	1 cut(s)	33
AspS9I	GGNCC	3 cut(s)	43, 354, 950
AsuHPI	GGTGA	2 cut(s)	606, 827
AvaII	GGWCC	3 cut(s)	43, 354, 950
BamHI	GGATCC	1 cut(s)	326
BarI	GAAGNNNNNNTAC	2 cut(s)	282, 314
BbrPI	CACGTG	1 cut(s)	719
Bbv12I	GWGCWC	1 cut(s)	750
BbvI	GCAGC	2 cut(s)	15, 536
BccI	CCATC	6 cut(s)	122, 247, 446, 458, 562, 771
BceAI	ACGGC	1 cut(s)	724
BciT130I	CCWGG	1 cut(s)	925
BciVI	GTATCC	3 cut(s)	467, 733, 1117
BcoDI	GTCTC	5 cut(s)	21, 240, 270, 495, 555
BfaI	CTAG	2 cut(s)	855, 1043
BfmI	CTRYAG	2 cut(s)	828, 1203
BfuI	GTATCC	3 cut(s)	467, 733, 1117
BglII	AGATCT	1 cut(s)	857
BisI	GCNGC	2 cut(s)	29, 525
BlsI	GCNGC	2 cut(s)	30, 526
BmcAI	AGTACT	1 cut(s)	63
Bme1390I	CCNGG	1 cut(s)	925
Bme18I	GGWCC	3 cut(s)	43, 354, 950
BmgT120I	GGNCC	3 cut(s)	43, 354, 950
BmiI	GGNNCC	3 cut(s)	45, 328, 895
BmrFI	CCNGG	1 cut(s)	925
BmsI	GCATC	2 cut(s)	511, 1181
BpuEI	CTTGAG	1 cut(s)	1233
BsaAI	YACGTR	1 cut(s)	719
BsaBI	GATNNNNATC	1 cut(s)	423
BsaI	GGTCTC	2 cut(s)	21, 240
BsaJI	CCNNGG	1 cut(s)	957
BsaWI	WCCGGW	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	2 cut(s)	275, 1208
Bse1I	ACTGG	1 cut(s)	610
Bse3DI	GCAATG	1 cut(s)	734
Bse8I	GATNNNNATC	1 cut(s)	423
BseAI	TCCGGA	1 cut(s)	19
BseBI	CCWGG	1 cut(s)	925
BseDI	CCNNGG	1 cut(s)	957
BseGI	GGATG	2 cut(s)	457, 526
BseJI	GATNNNNATC	1 cut(s)	423
BseLI	CCNNNNNNNGG	2 cut(s)	275, 1208
BseMI	GCAATG	1 cut(s)	734
BseMII	CTCAG	4 cut(s)	45, 75, 90, 744
BseNI	ACTGG	1 cut(s)	610
BseRI	GAGGAG	2 cut(s)	135, 1089
BseXI	GCAGC	2 cut(s)	15, 536
BshFI	GGCC	2 cut(s)	132, 609
BsiHKAI	GWGCWC	1 cut(s)	750
BsiSI	CCGG	1 cut(s)	20
BslFI	GGGAC	2 cut(s)	29, 1159
BslI	CCNNNNNNNGG	2 cut(s)	275, 1208
BsmAI	GTCTC	5 cut(s)	21, 240, 270, 495, 555
BsmBI	CGTCTC	1 cut(s)	495
BsmFI	GGGAC	2 cut(s)	29, 1159
BsnI	GGCC	2 cut(s)	132, 609
Bso31I	GGTCTC	2 cut(s)	21, 240
Bsp1286I	GDGCHC	1 cut(s)	750
Bsp13I	TCCGGA	1 cut(s)	19
Bsp143I	GATC	3 cut(s)	326, 424, 857
BspANI	GGCC	2 cut(s)	132, 609
BspCNI	CTCAG	4 cut(s)	46, 76, 89, 745
BspEI	TCCGGA	1 cut(s)	19
BspHI	TCATGA	2 cut(s)	382, 978
BspLI	GGNNCC	3 cut(s)	45, 328, 895
BspMAI	CTGCAG	1 cut(s)	1207
BspPI	GGATC	3 cut(s)	321, 334, 419
BspTNI	GGTCTC	2 cut(s)	21, 240
BsrDI	GCAATG	1 cut(s)	734
BsrI	ACTGG	1 cut(s)	610
BssECI	CCNNGG	1 cut(s)	957
BssMI	GATC	3 cut(s)	326, 424, 857
Bst2UI	CCWGG	1 cut(s)	925
Bst4CI	ACNGT	6 cut(s)	66, 125, 358, 437, 515, 954
Bst6I	CTCTTC	3 cut(s)	329, 540, 1184
BstBAI	YACGTR	1 cut(s)	719
BstC8I	GCNNGC	1 cut(s)	1203
BstDEI	CTNAG	5 cut(s)	54, 76, 84, 753, 880
BstENI	CCTNNNNNAGG	1 cut(s)	1206
BstF5I	GGATG	2 cut(s)	457, 526
BstHHI	GCGC	1 cut(s)	33
BstKTI	GATC	3 cut(s)	329, 427, 860
BstMAI	GTCTC	5 cut(s)	21, 240, 270, 495, 555
BstMBI	GATC	3 cut(s)	326, 424, 857
BstMWI	GCNNNNNNNGC	3 cut(s)	745, 876, 1169
BstNI	CCWGG	1 cut(s)	925
BstSCI	CCNGG	1 cut(s)	923
BstSFI	CTRYAG	2 cut(s)	828, 1203
BstV1I	GCAGC	2 cut(s)	15, 536
BstX2I	RGATCY	2 cut(s)	326, 857
BstYI	RGATCY	2 cut(s)	326, 857
BsuI	GTATCC	3 cut(s)	467, 733, 1117
BsuRI	GGCC	2 cut(s)	132, 609
BtgZI	GCGATG	1 cut(s)	684
BtsCI	GGATG	2 cut(s)	457, 526
BtsIMutI	CAGTG	2 cut(s)	130, 520
Cac8I	GCNNGC	1 cut(s)	1203
CaiI	CAGNNNCTG	2 cut(s)	83, 422
CciI	TCATGA	2 cut(s)	382, 978
CfoI	GCGC	1 cut(s)	33
Cfr13I	GGNCC	3 cut(s)	43, 354, 950
Csp6I	GTAC	2 cut(s)	62, 768
CviAII	CATG	3 cut(s)	383, 461, 979
CviQI	GTAC	2 cut(s)	62, 768
DdeI	CTNAG	5 cut(s)	54, 76, 84, 753, 880
DpnI	GATC	3 cut(s)	328, 426, 859
DpnII	GATC	3 cut(s)	326, 424, 857
DraI	TTTAAA	1 cut(s)	888
EaeI	YGGCCR	1 cut(s)	130
Eam1104I	CTCTTC	3 cut(s)	329, 540, 1184
EarI	CTCTTC	3 cut(s)	329, 540, 1184
Eco31I	GGTCTC	2 cut(s)	21, 240
Eco47I	GGWCC	3 cut(s)	43, 354, 950
Eco57I	CTGAAG	1 cut(s)	1149
Eco72I	CACGTG	1 cut(s)	719
EcoNI	CCTNNNNNAGG	1 cut(s)	1206
EcoO109I	RGGNCCY	1 cut(s)	43
EcoRII	CCWGG	1 cut(s)	923
Esp3I	CGTCTC	1 cut(s)	495
FaeI	CATG	3 cut(s)	386, 464, 982
FaqI	GGGAC	2 cut(s)	29, 1159
FatI	CATG	3 cut(s)	382, 460, 978
FauNDI	CATATG	1 cut(s)	1012
Fnu4HI	GCNGC	2 cut(s)	29, 525
FokI	GGATG	2 cut(s)	464, 533
Fsp4HI	GCNGC	2 cut(s)	29, 525
FspBI	CTAG	2 cut(s)	855, 1043
FspI	TGCGCA	1 cut(s)	32
GlaI	GCGC	1 cut(s)	32
GluI	GCNGC	2 cut(s)	29, 525
HaeIII	GGCC	2 cut(s)	132, 609
HapII	CCGG	1 cut(s)	20
HhaI	GCGC	1 cut(s)	33
Hin1II	CATG	3 cut(s)	386, 464, 982
Hin6I	GCGC	1 cut(s)	31
HinP1I	GCGC	1 cut(s)	31
HindIII	AAGCTT	1 cut(s)	693
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	2 cut(s)	606, 827
Hpy188III	TCNNGA	6 cut(s)	20, 159, 383, 428, 855, 979
HpyAV	CCTTC	5 cut(s)	335, 381, 650, 930, 1028
HpyCH4III	ACNGT	6 cut(s)	66, 125, 358, 437, 515, 954
HpyCH4IV	ACGT	2 cut(s)	488, 718
HpyCH4V	TGCA	4 cut(s)	230, 499, 524, 1205
HpyF10VI	GCNNNNNNNGC	3 cut(s)	745, 876, 1169
HpyF3I	CTNAG	5 cut(s)	54, 76, 84, 753, 880
HpySE526I	ACGT	2 cut(s)	488, 718
Hsp92II	CATG	3 cut(s)	386, 464, 982
HspAI	GCGC	1 cut(s)	31
Kpn2I	TCCGGA	1 cut(s)	19
Kzo9I	GATC	3 cut(s)	326, 424, 857
Lsp1109I	GCAGC	2 cut(s)	15, 536
LweI	GCATC	2 cut(s)	511, 1181
MaeI	CTAG	2 cut(s)	855, 1043
MaeII	ACGT	2 cut(s)	488, 718
MaeIII	GTNAC	2 cut(s)	509, 612
MalI	GATC	3 cut(s)	328, 426, 859
MboI	GATC	3 cut(s)	326, 424, 857
MflI	RGATCY	2 cut(s)	326, 857
MhlI	GDGCHC	1 cut(s)	750
MluCI	AATT	3 cut(s)	106, 209, 660
MlyI	GAGTC	5 cut(s)	65, 95, 373, 557, 791
MroI	TCCGGA	1 cut(s)	19
MroXI	GAANNNNTTC	1 cut(s)	986
MseI	TTAA	3 cut(s)	105, 483, 887
MspA1I	CMGCKG	1 cut(s)	997
MspI	CCGG	1 cut(s)	20
MspR9I	CCNGG	1 cut(s)	925
MvaI	CCWGG	1 cut(s)	925
MwoI	GCNNNNNNNGC	3 cut(s)	745, 876, 1169
NdeI	CATATG	1 cut(s)	1012
NdeII	GATC	3 cut(s)	326, 424, 857
NlaIII	CATG	3 cut(s)	386, 464, 982
NlaIV	GGNNCC	3 cut(s)	45, 328, 895
NmeAIII	GCCGAG	1 cut(s)	158
NmuCI	GTSAC	1 cut(s)	612
NsbI	TGCGCA	1 cut(s)	32
PagI	TCATGA	2 cut(s)	382, 978
PdmI	GAANNNNTTC	1 cut(s)	986
PfeI	GAWTC	7 cut(s)	80, 162, 395, 419, 470, 851, 1061
PfoI	TCCNGGA	1 cut(s)	923
PkrI	GCNGC	2 cut(s)	30, 526
PleI	GAGTC	5 cut(s)	64, 94, 373, 556, 791
PmaCI	CACGTG	1 cut(s)	719
PmlI	CACGTG	1 cut(s)	719
PpsI	GAGTC	5 cut(s)	64, 94, 373, 556, 791
Ppu21I	YACGTR	1 cut(s)	719
PpuMI	RGGWCCY	1 cut(s)	43
Psp5II	RGGWCCY	1 cut(s)	43
Psp6I	CCWGG	1 cut(s)	923
PspCI	CACGTG	1 cut(s)	719
PspGI	CCWGG	1 cut(s)	923
PspN4I	GGNNCC	3 cut(s)	45, 328, 895
PspPI	GGNCC	3 cut(s)	43, 354, 950
PspPPI	RGGWCCY	1 cut(s)	43
PstI	CTGCAG	1 cut(s)	1207
PstNI	CAGNNNCTG	2 cut(s)	83, 422
PsuI	RGATCY	2 cut(s)	326, 857
PvuII	CAGCTG	1 cut(s)	997
RsaI	GTAC	2 cut(s)	63, 769
RsaNI	GTAC	2 cut(s)	62, 768
SaqAI	TTAA	3 cut(s)	105, 483, 887
SatI	GCNGC	2 cut(s)	29, 525
Sau3AI	GATC	3 cut(s)	326, 424, 857
Sau96I	GGNCC	3 cut(s)	43, 354, 950
SbfI	CCTGCAGG	1 cut(s)	1207
ScaI	AGTACT	1 cut(s)	63
SchI	GAGTC	5 cut(s)	65, 95, 373, 557, 791
ScrFI	CCNGG	1 cut(s)	925
SdaI	CCTGCAGG	1 cut(s)	1207
SduI	GDGCHC	1 cut(s)	750
SfaNI	GCATC	2 cut(s)	511, 1181
SfcI	CTRYAG	2 cut(s)	828, 1203
SinI	GGWCC	3 cut(s)	43, 354, 950
SmlI	CTYRAG	1 cut(s)	1248
SmoI	CTYRAG	1 cut(s)	1248
Sse8387I	CCTGCAGG	1 cut(s)	1207
Sse9I	AATT	3 cut(s)	106, 209, 660
SspMI	CTAG	2 cut(s)	855, 1043
StyD4I	CCNGG	1 cut(s)	923
TaaI	ACNGT	6 cut(s)	66, 125, 358, 437, 515, 954
TaiI	ACGT	2 cut(s)	491, 721
TaqI	TCGA	2 cut(s)	165, 1175
TasI	AATT	3 cut(s)	106, 209, 660
TatI	WGTACW	1 cut(s)	61
TfiI	GAWTC	7 cut(s)	80, 162, 395, 419, 470, 851, 1061
Tru1I	TTAA	3 cut(s)	105, 483, 887
Tru9I	TTAA	3 cut(s)	105, 483, 887
TscAI	CASTG	2 cut(s)	130, 520
TseFI	GTSAC	1 cut(s)	612
TseI	GCWGC	2 cut(s)	28, 524
Tsp45I	GTSAC	1 cut(s)	612
TspDTI	ATGAA	6 cut(s)	183, 210, 399, 979, 995, 1029
TspGWI	ACGGA	1 cut(s)	339
TspRI	CASTG	2 cut(s)	130, 520
VpaK11BI	GGWCC	3 cut(s)	43, 354, 950
XagI	CCTNNNNNAGG	1 cut(s)	1206
XapI	RAATTY	2 cut(s)	209, 660
XbaI	TCTAGA	1 cut(s)	854
XmnI	GAANNNNTTC	1 cut(s)	986
XspI	CTAG	2 cut(s)	855, 1043
ZrmI	AGTACT	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.