Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003451

Physical Location & Seq

Genomic Coordinates Reverse (-)

67684509 .. 67688818

Gene Structure 4310 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60624

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGAGCAGGGAGGGGTCTCCGGATTGGCTGCGCACTTTTCAGGTCCCAAAAACTGAGTCAGTACTGTCATTGTCCTCAGATTCTGAGTTTTCATTGAATGGACTTAATTCGGGGGAGGATAACAGTGATGGCCGAGAACTATCTCCTCATAAATCATCTGGATTCGATGAAGATGATGATGATGATGATAATGATAATGATAATGAAGTTATCGGTAAATTTCTTGGGAAAAGTGTTGCAGCGTTTCCATCTGATAAGAGACTGAAAGGCAAGTCTCCGAAACGAGAGGAAAAAGTAGAAGAAGATATACCCCAGAAAAAGAAGAAGTCAGACGGATCCAAGAAGAGAGAAGGTAAAACAAGGACCGTTGTTGAGAAGCCTTCAAAGACTCATGAACCGAATGATTCAGTTTTGGCGTTGTCATCAGATTCTGATCCTGAAAACAGTCCTCCCAGAGAGGATGGTATCCACGATGGAGAATCTTCTGACCTTAAAACGTCTCAACTGCAATCAATAGGTAACAGTGAGGATGCAGCTCTTATGGGCAGTAGTGAAGAGTCTCCATCTAAACAGGCTACAAAAGGAAAATCTTTGAAGAAAAGTCCAAAAGGAAAAGGCCAGTCACCCAAGAAAGAGAAGAAAAAGATAGATAGCAAAGAAAAAGAAGGAATTTGTGGCGATGTGGAAGTGGCAGAGAAAGAAGCTTCTGACAAGCAGATTGAACCACGTGTATCCACCACAACATTGCCGTTGGTGCTCTCTGAGAAAGTCCATCGTACAAAGGCACTTGTTGAGTGTGAAAAGGACTCCATAGATTTGAGTGGTGATATGGGTGCTGTAGGACGGGTGGTAGTTTCAGATTCTAGATCTGGGCATAGCGAGATGTGCTTAGATTTAAAAGGAACCATTTACAAAACAACCATAGTTCCTTCCAGGACATTTTGTGTTGTTAGCTTTGGACCGTCCGAGGCAAAGATAGAAGCTATCATGAATGACTTCATTCAGCTGAAACCAGAAACATATGAAGCTGAAACAATGGTTGAAGGAACACTAGAGGGTTTCTTATTTGATTCCGAAGATGAGGCTGACAAAGTTCCTAAAGCAACTCCTCATCAAACTGATAAAAATGAGGATACTGAAGAACAAACCAATGGGACAACCAAAGGGAAAGCTGACAAAGCATCGAGGGTTGTAAAGAAGAGAGATAAGCCTGCAGGAGGGAAGCCACAGCCACCAAAGAAAGCAAGAAAGAAAACTCAACTTTCCAAGAAGCCCAAGAACAAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008544 GO:0009058 GO:0009059 GO:0009330 GO:0009653 GO:0009888 GO:0009913 GO:0009987 GO:0010026 GO:0010090 GO:0016043 GO:0022402 GO:0022622 GO:0030154 GO:0030307 GO:0030855 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034641 GO:0034645 GO:0040008 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045927 GO:0046483 GO:0048364 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051128 GO:0051276 GO:0060429 GO:0065007 GO:0071704 GO:0071840 GO:0090304 GO:0090558 GO:0090626 GO:0097159 GO:0099402 GO:1901360 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

429

Amino Acids

46.88

Weight (kDa)

5.93

Isoelectric Point (pI)

49.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630
fragaria_vesca	FvH4_7g33320 FvH4_7g33320
malus_domestica	MD01G1231400.v1.1 MD07G1303400.v1.1
prunus_persica	Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1
pyrus_communis	pycom01g23940 pycom07g27630
rosa_chinensis	RchiOBHm_Chr1g0383301
rosa_laevigata	RLG00000026115
rosa_multiflora	Rmu_sc0007173.1_g000019 Rmu_sc0014196.1_g000003
rosa_roxburghii	Rroxscaffold_4G00277420
rosa_rugosa	Rorug01G0440400 Rorug01G0440400
rosa_samantha	Rh1AG466000 Rh1BG423400 Rh1CG436600 Rh1DG456100
rosa_wichuraiana	Rw1G040640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	32
AccIII	TCCGGA	1 cut(s)	19
AclWI	GGATC	3 cut(s)	330, 343, 428
AcoI	YGGCCR	1 cut(s)	130
AcsI	RAATTY	2 cut(s)	218, 669
AcuI	CTGAAG	1 cut(s)	1158
AcvI	CACGTG	1 cut(s)	728
AfaI	GTAC	2 cut(s)	63, 778
AfiI	CCNNNNNNNGG	1 cut(s)	1217
AflIII	ACRYGT	1 cut(s)	727
AgsI	TTSAA	5 cut(s)	97, 384, 595, 722, 1043
AjnI	CCWGG	1 cut(s)	932
AluBI	AGCT	7 cut(s)	536, 704, 954, 983, 1006, 1028, 1172
AluI	AGCT	7 cut(s)	536, 704, 954, 983, 1006, 1028, 1172
Alw21I	GWGCWC	1 cut(s)	759
Alw26I	GTCTC	5 cut(s)	21, 253, 279, 504, 564
AlwI	GGATC	3 cut(s)	330, 343, 428
AlwNI	CAGNNNCTG	2 cut(s)	83, 431
Aor13HI	TCCGGA	1 cut(s)	19
AoxI	GGCC	2 cut(s)	130, 616
ApeKI	GCWGC	3 cut(s)	28, 239, 533
ApoI	RAATTY	2 cut(s)	218, 669
ArsI	GACNNNNNNTTYG	2 cut(s)	41, 73
Asp700I	GAANNNNTTC	1 cut(s)	995
AspLEI	GCGC	1 cut(s)	33
AspS9I	GGNCC	3 cut(s)	43, 363, 959
AsuHPI	GGTGA	2 cut(s)	615, 836
AvaII	GGWCC	3 cut(s)	43, 363, 959
BamHI	GGATCC	1 cut(s)	335
BarI	GAAGNNNNNNTAC	2 cut(s)	291, 323
BbrPI	CACGTG	1 cut(s)	728
Bbv12I	GWGCWC	1 cut(s)	759
BbvI	GCAGC	3 cut(s)	15, 251, 545
BccI	CCATC	6 cut(s)	122, 256, 455, 467, 571, 780
BceAI	ACGGC	1 cut(s)	733
BciT130I	CCWGG	1 cut(s)	934
BciVI	GTATCC	3 cut(s)	476, 742, 1126
BcoDI	GTCTC	5 cut(s)	21, 253, 279, 504, 564
BfaI	CTAG	2 cut(s)	864, 1052
BfmI	CTRYAG	2 cut(s)	837, 1212
BfuI	GTATCC	3 cut(s)	476, 742, 1126
BglII	AGATCT	1 cut(s)	866
BisI	GCNGC	3 cut(s)	29, 240, 534
BlsI	GCNGC	3 cut(s)	30, 241, 535
BmcAI	AGTACT	1 cut(s)	63
Bme1390I	CCNGG	1 cut(s)	934
Bme18I	GGWCC	3 cut(s)	43, 363, 959
BmgT120I	GGNCC	3 cut(s)	43, 363, 959
BmiI	GGNNCC	3 cut(s)	45, 337, 904
BmrFI	CCNGG	1 cut(s)	934
BmsI	GCATC	2 cut(s)	520, 1190
BsaAI	YACGTR	1 cut(s)	728
BsaBI	GATNNNNATC	1 cut(s)	432
BsaI	GGTCTC	1 cut(s)	21
BsaJI	CCNNGG	1 cut(s)	966
BsaWI	WCCGGW	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	1 cut(s)	1217
Bse1I	ACTGG	1 cut(s)	619
Bse3DI	GCAATG	1 cut(s)	743
Bse8I	GATNNNNATC	1 cut(s)	432
BseAI	TCCGGA	1 cut(s)	19
BseBI	CCWGG	1 cut(s)	934
BseDI	CCNNGG	1 cut(s)	966
BseGI	GGATG	2 cut(s)	466, 535
BseJI	GATNNNNATC	1 cut(s)	432
BseLI	CCNNNNNNNGG	1 cut(s)	1217
BseMI	GCAATG	1 cut(s)	743
BseMII	CTCAG	4 cut(s)	45, 75, 90, 753
BseNI	ACTGG	1 cut(s)	619
BseRI	GAGGAG	2 cut(s)	135, 1098
BseXI	GCAGC	3 cut(s)	15, 251, 545
BshFI	GGCC	2 cut(s)	132, 618
BsiHKAI	GWGCWC	1 cut(s)	759
BsiSI	CCGG	1 cut(s)	20
BslFI	GGGAC	2 cut(s)	29, 1168
BslI	CCNNNNNNNGG	1 cut(s)	1217
BsmAI	GTCTC	5 cut(s)	21, 253, 279, 504, 564
BsmBI	CGTCTC	1 cut(s)	504
BsmFI	GGGAC	2 cut(s)	29, 1168
BsnI	GGCC	2 cut(s)	132, 618
Bso31I	GGTCTC	1 cut(s)	21
Bsp1286I	GDGCHC	1 cut(s)	759
Bsp13I	TCCGGA	1 cut(s)	19
Bsp143I	GATC	3 cut(s)	335, 433, 866
BspANI	GGCC	2 cut(s)	132, 618
BspCNI	CTCAG	4 cut(s)	46, 76, 89, 754
BspEI	TCCGGA	1 cut(s)	19
BspHI	TCATGA	2 cut(s)	391, 987
BspLI	GGNNCC	3 cut(s)	45, 337, 904
BspMAI	CTGCAG	1 cut(s)	1216
BspPI	GGATC	3 cut(s)	330, 343, 428
BspTNI	GGTCTC	1 cut(s)	21
BsrDI	GCAATG	1 cut(s)	743
BsrI	ACTGG	1 cut(s)	619
BssECI	CCNNGG	1 cut(s)	966
BssMI	GATC	3 cut(s)	335, 433, 866
Bst2UI	CCWGG	1 cut(s)	934
Bst4CI	ACNGT	6 cut(s)	66, 125, 367, 446, 524, 963
Bst6I	CTCTTC	3 cut(s)	338, 549, 1193
BstBAI	YACGTR	1 cut(s)	728
BstC8I	GCNNGC	1 cut(s)	1212
BstDEI	CTNAG	5 cut(s)	54, 76, 84, 762, 889
BstENI	CCTNNNNNAGG	1 cut(s)	1215
BstF5I	GGATG	2 cut(s)	466, 535
BstHHI	GCGC	1 cut(s)	33
BstKTI	GATC	3 cut(s)	338, 436, 869
BstMAI	GTCTC	5 cut(s)	21, 253, 279, 504, 564
BstMBI	GATC	3 cut(s)	335, 433, 866
BstMWI	GCNNNNNNNGC	3 cut(s)	754, 885, 1178
BstNI	CCWGG	1 cut(s)	934
BstSCI	CCNGG	1 cut(s)	932
BstSFI	CTRYAG	2 cut(s)	837, 1212
BstV1I	GCAGC	3 cut(s)	15, 251, 545
BstX2I	RGATCY	2 cut(s)	335, 866
BstYI	RGATCY	2 cut(s)	335, 866
BsuI	GTATCC	3 cut(s)	476, 742, 1126
BsuRI	GGCC	2 cut(s)	132, 618
BtgZI	GCGATG	1 cut(s)	693
BtsCI	GGATG	2 cut(s)	466, 535
BtsIMutI	CAGTG	2 cut(s)	130, 529
Cac8I	GCNNGC	1 cut(s)	1212
CaiI	CAGNNNCTG	2 cut(s)	83, 431
CciI	TCATGA	2 cut(s)	391, 987
CfoI	GCGC	1 cut(s)	33
Cfr13I	GGNCC	3 cut(s)	43, 363, 959
Csp6I	GTAC	2 cut(s)	62, 777
CviAII	CATG	2 cut(s)	392, 988
CviQI	GTAC	2 cut(s)	62, 777
DdeI	CTNAG	5 cut(s)	54, 76, 84, 762, 889
DpnI	GATC	3 cut(s)	337, 435, 868
DpnII	GATC	3 cut(s)	335, 433, 866
DraI	TTTAAA	1 cut(s)	897
EaeI	YGGCCR	1 cut(s)	130
Eam1104I	CTCTTC	3 cut(s)	338, 549, 1193
EarI	CTCTTC	3 cut(s)	338, 549, 1193
Eco31I	GGTCTC	1 cut(s)	21
Eco47I	GGWCC	3 cut(s)	43, 363, 959
Eco57I	CTGAAG	1 cut(s)	1158
Eco72I	CACGTG	1 cut(s)	728
EcoNI	CCTNNNNNAGG	1 cut(s)	1215
EcoO109I	RGGNCCY	1 cut(s)	43
EcoRII	CCWGG	1 cut(s)	932
Esp3I	CGTCTC	1 cut(s)	504
FaeI	CATG	2 cut(s)	395, 991
FaqI	GGGAC	2 cut(s)	29, 1168
FatI	CATG	2 cut(s)	391, 987
FauNDI	CATATG	1 cut(s)	1021
Fnu4HI	GCNGC	3 cut(s)	29, 240, 534
FokI	GGATG	2 cut(s)	473, 542
Fsp4HI	GCNGC	3 cut(s)	29, 240, 534
FspBI	CTAG	2 cut(s)	864, 1052
FspI	TGCGCA	1 cut(s)	32
GlaI	GCGC	1 cut(s)	32
GluI	GCNGC	3 cut(s)	29, 240, 534
HaeIII	GGCC	2 cut(s)	132, 618
HapII	CCGG	1 cut(s)	20
HhaI	GCGC	1 cut(s)	33
Hin1II	CATG	2 cut(s)	395, 991
Hin6I	GCGC	1 cut(s)	31
HinP1I	GCGC	1 cut(s)	31
HindIII	AAGCTT	1 cut(s)	702
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	2 cut(s)	615, 836
Hpy188III	TCNNGA	6 cut(s)	20, 159, 392, 437, 864, 988
HpyAV	CCTTC	5 cut(s)	344, 390, 659, 939, 1037
HpyCH4III	ACNGT	6 cut(s)	66, 125, 367, 446, 524, 963
HpyCH4IV	ACGT	2 cut(s)	497, 727
HpyCH4V	TGCA	4 cut(s)	239, 508, 533, 1214
HpyF10VI	GCNNNNNNNGC	3 cut(s)	754, 885, 1178
HpyF3I	CTNAG	5 cut(s)	54, 76, 84, 762, 889
HpySE526I	ACGT	2 cut(s)	497, 727
Hsp92II	CATG	2 cut(s)	395, 991
HspAI	GCGC	1 cut(s)	31
Kpn2I	TCCGGA	1 cut(s)	19
Kzo9I	GATC	3 cut(s)	335, 433, 866
Lsp1109I	GCAGC	3 cut(s)	15, 251, 545
LweI	GCATC	2 cut(s)	520, 1190
MaeI	CTAG	2 cut(s)	864, 1052
MaeII	ACGT	2 cut(s)	497, 727
MaeIII	GTNAC	2 cut(s)	518, 621
MalI	GATC	3 cut(s)	337, 435, 868
MboI	GATC	3 cut(s)	335, 433, 866
MflI	RGATCY	2 cut(s)	335, 866
MhlI	GDGCHC	1 cut(s)	759
MluCI	AATT	3 cut(s)	106, 218, 669
MlyI	GAGTC	4 cut(s)	65, 382, 566, 800
MroI	TCCGGA	1 cut(s)	19
MroXI	GAANNNNTTC	1 cut(s)	995
MseI	TTAA	3 cut(s)	105, 492, 896
MspA1I	CMGCKG	1 cut(s)	1006
MspI	CCGG	1 cut(s)	20
MspR9I	CCNGG	1 cut(s)	934
MvaI	CCWGG	1 cut(s)	934
MwoI	GCNNNNNNNGC	3 cut(s)	754, 885, 1178
NdeI	CATATG	1 cut(s)	1021
NdeII	GATC	3 cut(s)	335, 433, 866
NlaIII	CATG	2 cut(s)	395, 991
NlaIV	GGNNCC	3 cut(s)	45, 337, 904
NmeAIII	GCCGAG	1 cut(s)	158
NmuCI	GTSAC	1 cut(s)	621
NsbI	TGCGCA	1 cut(s)	32
PagI	TCATGA	2 cut(s)	391, 987
PdmI	GAANNNNTTC	1 cut(s)	995
PfeI	GAWTC	7 cut(s)	80, 162, 404, 428, 479, 860, 1070
PfoI	TCCNGGA	1 cut(s)	932
PkrI	GCNGC	3 cut(s)	30, 241, 535
PleI	GAGTC	4 cut(s)	64, 382, 565, 800
PmaCI	CACGTG	1 cut(s)	728
PmlI	CACGTG	1 cut(s)	728
PpsI	GAGTC	4 cut(s)	64, 382, 565, 800
Ppu21I	YACGTR	1 cut(s)	728
PpuMI	RGGWCCY	1 cut(s)	43
Psp5II	RGGWCCY	1 cut(s)	43
Psp6I	CCWGG	1 cut(s)	932
PspCI	CACGTG	1 cut(s)	728
PspGI	CCWGG	1 cut(s)	932
PspN4I	GGNNCC	3 cut(s)	45, 337, 904
PspPI	GGNCC	3 cut(s)	43, 363, 959
PspPPI	RGGWCCY	1 cut(s)	43
PstI	CTGCAG	1 cut(s)	1216
PstNI	CAGNNNCTG	2 cut(s)	83, 431
PsuI	RGATCY	2 cut(s)	335, 866
PvuII	CAGCTG	1 cut(s)	1006
RsaI	GTAC	2 cut(s)	63, 778
RsaNI	GTAC	2 cut(s)	62, 777
SaqAI	TTAA	3 cut(s)	105, 492, 896
SatI	GCNGC	3 cut(s)	29, 240, 534
Sau3AI	GATC	3 cut(s)	335, 433, 866
Sau96I	GGNCC	3 cut(s)	43, 363, 959
SbfI	CCTGCAGG	1 cut(s)	1216
ScaI	AGTACT	1 cut(s)	63
SchI	GAGTC	4 cut(s)	65, 382, 566, 800
ScrFI	CCNGG	1 cut(s)	934
SdaI	CCTGCAGG	1 cut(s)	1216
SduI	GDGCHC	1 cut(s)	759
SfaNI	GCATC	2 cut(s)	520, 1190
SfcI	CTRYAG	2 cut(s)	837, 1212
SinI	GGWCC	3 cut(s)	43, 363, 959
Sse8387I	CCTGCAGG	1 cut(s)	1216
Sse9I	AATT	3 cut(s)	106, 218, 669
SspMI	CTAG	2 cut(s)	864, 1052
StyD4I	CCNGG	1 cut(s)	932
TaaI	ACNGT	6 cut(s)	66, 125, 367, 446, 524, 963
TaiI	ACGT	2 cut(s)	500, 730
TaqI	TCGA	2 cut(s)	165, 1184
TasI	AATT	3 cut(s)	106, 218, 669
TatI	WGTACW	1 cut(s)	61
TfiI	GAWTC	7 cut(s)	80, 162, 404, 428, 479, 860, 1070
Tru1I	TTAA	3 cut(s)	105, 492, 896
Tru9I	TTAA	3 cut(s)	105, 492, 896
TscAI	CASTG	2 cut(s)	130, 529
TseFI	GTSAC	1 cut(s)	621
TseI	GCWGC	3 cut(s)	28, 239, 533
Tsp45I	GTSAC	1 cut(s)	621
TspDTI	ATGAA	7 cut(s)	81, 183, 219, 408, 988, 1004, 1038
TspGWI	ACGGA	1 cut(s)	348
TspRI	CASTG	2 cut(s)	130, 529
VpaK11BI	GGWCC	3 cut(s)	43, 363, 959
XagI	CCTNNNNNAGG	1 cut(s)	1215
XapI	RAATTY	2 cut(s)	218, 669
XbaI	TCTAGA	1 cut(s)	863
XmnI	GAANNNNTTC	1 cut(s)	995
XspI	CTAG	2 cut(s)	864, 1052
ZrmI	AGTACT	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.