Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003451

Physical Location & Seq

Genomic Coordinates Forward (+)

849803 .. 853739

Gene Structure 3937 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00277420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGAGCAGGGAGGGGTCTCCGGATTGGCTGCGCACTTTTCAGGTCCCAAAAACTGAGTCAGTACTGTCATTGTCCTCAGATTCTGAGTCTTCATTGAATGGACTTAATTCGGGGAGGATAACAGTGATGGCCGAGAACTATCTCCTCATAAATCTTCTGGATTCGATGAAGATGATGATGATAATGAAGTTATCGGAACCGAATGATTCAGTCTTGGCATTGTCATCAGATTCTGATCCTGAAAACAGTCCTCCCAGAGAGGATGGTATCCATAATGGAGAATCTTCTGACCTTAAAACGTCTCAACTGCAATCAATAGGTAACAGTGAGGATGCAGCTCTTATGGGCAGTAGTGAAGAGTCTCCATCTAAACAGGCTACAAAAGGAAAATCTTTGAAGAAAAGTCCAAAAGGAAAAGGCCAGTCACCCAAGAAAGAGAAGAAAAAGATAGATAGCAAAGAAAAAGAAGGTATGAATTGGGGATCTGCTGGAATTTGTGGCGATGTGGAAGTGGCAGAGAAAGAAGCTTCTGACAAGCAGATTGAACCACGTGTATCCACCTCAACATTGCCGTTGGTGCTCTCTGAGAAAGTCCATCGTACAAAGGCACTTGTTGAGTGTGAAAAGGACTCCATAGATTTGAGTGGTGATATGGGTGCTGTAGGACGGGTAGTAGTTTCAGATTCTAGATCTGGGCATAGCGAGATGTGCTTAGATTTAAAAGGAACCATTTACAAAACAACGATAGTTCCTTCCAGGACATTTTGTGTTGTTAGCTTTGGACCGTCCGAGGCAAAGATAGAAGCTATCATGAATGACTTCATTCAGCTGAAACCAGAAACATATGAAGCTGAAACAATGGTTGAAGGAACACTAGAGGGTTTCTTATTTGATTCCGAAGATGAGGCTGACAAAGTTCCTAAAGCAACTCCTCATCAAACTGATAAGAATGAGGATACTGAAGAACAAACCAATGGGACAACCAAAGGGAAAGCTGACAAAGGATCGAGGGTTGTAAAGAAGAGAGATAAGCCTGCAGGAGGGAAGCCACAGCCACCAAAGAAAGCAAGAAAGAAAACTCAAGTTTCCAAGAAGCCCAAGAACAAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008544 GO:0009058 GO:0009059 GO:0009330 GO:0009653 GO:0009888 GO:0009913 GO:0009987 GO:0010026 GO:0010090 GO:0016043 GO:0022402 GO:0022622 GO:0030154 GO:0030307 GO:0030855 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034641 GO:0034645 GO:0040008 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045927 GO:0046483 GO:0048364 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051128 GO:0051276 GO:0060429 GO:0065007 GO:0071704 GO:0071840 GO:0090304 GO:0090558 GO:0090626 GO:0097159 GO:0099402 GO:1901360 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

370

Amino Acids

40.24

Weight (kDa)

6.52

Isoelectric Point (pI)

48.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630
fragaria_vesca	FvH4_7g33320 FvH4_7g33320
malus_domestica	MD01G1231400.v1.1 MD07G1303400.v1.1
prunus_persica	Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1
pyrus_communis	pycom01g23940 pycom07g27630
rosa_chinensis	RchiOBHm_Chr1g0383301
rosa_laevigata	RLG00000026115
rosa_multiflora	Rmu_sc0007173.1_g000019 Rmu_sc0014196.1_g000003
rosa_roxburghii	Rroxscaffold_4G00277420
rosa_rugosa	Rorug01G0440400 Rorug01G0440400
rosa_samantha	Rh1AG466000 Rh1BG423400 Rh1CG436600 Rh1DG456100
rosa_wichuraiana	Rw1G040640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	32
AccIII	TCCGGA	1 cut(s)	19
AclWI	GGATC	3 cut(s)	230, 490, 1012
AcoI	YGGCCR	1 cut(s)	129
AcsI	RAATTY	1 cut(s)	492
AcuI	CTGAAG	1 cut(s)	981
AcvI	CACGTG	1 cut(s)	551
AfaI	GTAC	2 cut(s)	63, 601
AfiI	CCNNNNNNNGG	1 cut(s)	1040
AflIII	ACRYGT	1 cut(s)	550
AgsI	TTSAA	4 cut(s)	97, 397, 545, 866
AjnI	CCWGG	1 cut(s)	755
AluBI	AGCT	7 cut(s)	338, 527, 777, 806, 829, 851, 995
AluI	AGCT	7 cut(s)	338, 527, 777, 806, 829, 851, 995
Alw21I	GWGCWC	1 cut(s)	582
Alw26I	GTCTC	3 cut(s)	21, 306, 366
AlwI	GGATC	3 cut(s)	230, 490, 1012
AlwNI	CAGNNNCTG	2 cut(s)	83, 233
Aor13HI	TCCGGA	1 cut(s)	19
AoxI	GGCC	2 cut(s)	129, 418
ApeKI	GCWGC	2 cut(s)	28, 335
ApoI	RAATTY	1 cut(s)	492
ArsI	GACNNNNNNTTYG	2 cut(s)	41, 73
Asp700I	GAANNNNTTC	1 cut(s)	818
AspLEI	GCGC	1 cut(s)	33
AspS9I	GGNCC	2 cut(s)	43, 782
AsuHPI	GGTGA	2 cut(s)	417, 659
AvaII	GGWCC	2 cut(s)	43, 782
BbrPI	CACGTG	1 cut(s)	551
BbsI	GAAGAC	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	582
BbvI	GCAGC	2 cut(s)	15, 347
BccI	CCATC	4 cut(s)	121, 257, 373, 603
BceAI	ACGGC	1 cut(s)	556
BciT130I	CCWGG	1 cut(s)	757
BciVI	GTATCC	3 cut(s)	278, 565, 949
BcoDI	GTCTC	3 cut(s)	21, 306, 366
BfaI	CTAG	2 cut(s)	687, 875
BfmI	CTRYAG	2 cut(s)	660, 1035
BfuI	GTATCC	3 cut(s)	278, 565, 949
BglII	AGATCT	1 cut(s)	689
BisI	GCNGC	2 cut(s)	29, 336
BlsI	GCNGC	2 cut(s)	30, 337
BmcAI	AGTACT	1 cut(s)	63
Bme1390I	CCNGG	1 cut(s)	757
Bme18I	GGWCC	2 cut(s)	43, 782
BmgT120I	GGNCC	2 cut(s)	43, 782
BmiI	GGNNCC	3 cut(s)	45, 198, 727
BmrFI	CCNGG	1 cut(s)	757
BmsI	GCATC	1 cut(s)	322
BpiI	GAAGAC	1 cut(s)	81
BpuEI	CTTGAG	1 cut(s)	1065
BsaAI	YACGTR	1 cut(s)	551
BsaBI	GATNNNNATC	1 cut(s)	234
BsaI	GGTCTC	1 cut(s)	21
BsaJI	CCNNGG	1 cut(s)	789
BsaWI	WCCGGW	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	1 cut(s)	1040
Bse1I	ACTGG	1 cut(s)	421
Bse3DI	GCAATG	1 cut(s)	566
Bse8I	GATNNNNATC	1 cut(s)	234
BseAI	TCCGGA	1 cut(s)	19
BseBI	CCWGG	1 cut(s)	757
BseDI	CCNNGG	1 cut(s)	789
BseGI	GGATG	2 cut(s)	268, 337
BseJI	GATNNNNATC	1 cut(s)	234
BseLI	CCNNNNNNNGG	1 cut(s)	1040
BseMI	GCAATG	1 cut(s)	566
BseMII	CTCAG	4 cut(s)	45, 75, 90, 576
BseNI	ACTGG	1 cut(s)	421
BseRI	GAGGAG	2 cut(s)	134, 921
BseXI	GCAGC	2 cut(s)	15, 347
BshFI	GGCC	2 cut(s)	131, 420
BsiHKAI	GWGCWC	1 cut(s)	582
BsiSI	CCGG	1 cut(s)	20
BslFI	GGGAC	2 cut(s)	29, 991
BslI	CCNNNNNNNGG	1 cut(s)	1040
BsmAI	GTCTC	3 cut(s)	21, 306, 366
BsmBI	CGTCTC	1 cut(s)	306
BsmFI	GGGAC	2 cut(s)	29, 991
BsnI	GGCC	2 cut(s)	131, 420
Bso31I	GGTCTC	1 cut(s)	21
Bsp1286I	GDGCHC	1 cut(s)	582
Bsp13I	TCCGGA	1 cut(s)	19
Bsp143I	GATC	4 cut(s)	235, 482, 689, 1004
BspANI	GGCC	2 cut(s)	131, 420
BspCNI	CTCAG	4 cut(s)	46, 76, 89, 577
BspEI	TCCGGA	1 cut(s)	19
BspHI	TCATGA	1 cut(s)	810
BspLI	GGNNCC	3 cut(s)	45, 198, 727
BspMAI	CTGCAG	1 cut(s)	1039
BspPI	GGATC	3 cut(s)	230, 490, 1012
BspTNI	GGTCTC	1 cut(s)	21
BsrDI	GCAATG	1 cut(s)	566
BsrI	ACTGG	1 cut(s)	421
BssECI	CCNNGG	1 cut(s)	789
BssMI	GATC	4 cut(s)	235, 482, 689, 1004
Bst2UI	CCWGG	1 cut(s)	757
Bst4CI	ACNGT	5 cut(s)	66, 124, 248, 326, 786
Bst6I	CTCTTC	2 cut(s)	351, 1016
BstBAI	YACGTR	1 cut(s)	551
BstC8I	GCNNGC	1 cut(s)	1035
BstDEI	CTNAG	5 cut(s)	54, 76, 84, 585, 712
BstENI	CCTNNNNNAGG	1 cut(s)	1038
BstF5I	GGATG	2 cut(s)	268, 337
BstHHI	GCGC	1 cut(s)	33
BstKTI	GATC	4 cut(s)	238, 485, 692, 1007
BstMAI	GTCTC	3 cut(s)	21, 306, 366
BstMBI	GATC	4 cut(s)	235, 482, 689, 1004
BstMWI	GCNNNNNNNGC	2 cut(s)	577, 708
BstNI	CCWGG	1 cut(s)	757
BstSCI	CCNGG	1 cut(s)	755
BstSFI	CTRYAG	2 cut(s)	660, 1035
BstV1I	GCAGC	2 cut(s)	15, 347
BstV2I	GAAGAC	1 cut(s)	81
BstX2I	RGATCY	2 cut(s)	482, 689
BstYI	RGATCY	2 cut(s)	482, 689
BsuI	GTATCC	3 cut(s)	278, 565, 949
BsuRI	GGCC	2 cut(s)	131, 420
BtgZI	GCGATG	1 cut(s)	516
BtsCI	GGATG	2 cut(s)	268, 337
BtsIMutI	CAGTG	2 cut(s)	129, 331
Cac8I	GCNNGC	1 cut(s)	1035
CaiI	CAGNNNCTG	2 cut(s)	83, 233
CciI	TCATGA	1 cut(s)	810
CfoI	GCGC	1 cut(s)	33
Cfr13I	GGNCC	2 cut(s)	43, 782
Csp6I	GTAC	2 cut(s)	62, 600
CviAII	CATG	1 cut(s)	811
CviQI	GTAC	2 cut(s)	62, 600
DdeI	CTNAG	5 cut(s)	54, 76, 84, 585, 712
DpnI	GATC	4 cut(s)	237, 484, 691, 1006
DpnII	GATC	4 cut(s)	235, 482, 689, 1004
DraI	TTTAAA	1 cut(s)	720
EaeI	YGGCCR	1 cut(s)	129
Eam1104I	CTCTTC	2 cut(s)	351, 1016
EarI	CTCTTC	2 cut(s)	351, 1016
Eco31I	GGTCTC	1 cut(s)	21
Eco47I	GGWCC	2 cut(s)	43, 782
Eco57I	CTGAAG	1 cut(s)	981
Eco72I	CACGTG	1 cut(s)	551
EcoNI	CCTNNNNNAGG	1 cut(s)	1038
EcoO109I	RGGNCCY	1 cut(s)	43
EcoRII	CCWGG	1 cut(s)	755
Esp3I	CGTCTC	1 cut(s)	306
FaeI	CATG	1 cut(s)	814
FaqI	GGGAC	2 cut(s)	29, 991
FatI	CATG	1 cut(s)	810
FauNDI	CATATG	1 cut(s)	844
Fnu4HI	GCNGC	2 cut(s)	29, 336
FokI	GGATG	2 cut(s)	275, 344
Fsp4HI	GCNGC	2 cut(s)	29, 336
FspBI	CTAG	2 cut(s)	687, 875
FspI	TGCGCA	1 cut(s)	32
GlaI	GCGC	1 cut(s)	32
GluI	GCNGC	2 cut(s)	29, 336
HaeIII	GGCC	2 cut(s)	131, 420
HapII	CCGG	1 cut(s)	20
HhaI	GCGC	1 cut(s)	33
Hin1II	CATG	1 cut(s)	814
Hin6I	GCGC	1 cut(s)	31
HinP1I	GCGC	1 cut(s)	31
HindIII	AAGCTT	1 cut(s)	525
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	2 cut(s)	417, 659
Hpy188III	TCNNGA	5 cut(s)	20, 158, 239, 687, 811
HpyAV	CCTTC	3 cut(s)	461, 762, 860
HpyCH4III	ACNGT	5 cut(s)	66, 124, 248, 326, 786
HpyCH4IV	ACGT	2 cut(s)	299, 550
HpyCH4V	TGCA	3 cut(s)	310, 335, 1037
HpyF10VI	GCNNNNNNNGC	2 cut(s)	577, 708
HpyF3I	CTNAG	5 cut(s)	54, 76, 84, 585, 712
HpySE526I	ACGT	2 cut(s)	299, 550
Hsp92II	CATG	1 cut(s)	814
HspAI	GCGC	1 cut(s)	31
Kpn2I	TCCGGA	1 cut(s)	19
Kzo9I	GATC	4 cut(s)	235, 482, 689, 1004
Lsp1109I	GCAGC	2 cut(s)	15, 347
LweI	GCATC	1 cut(s)	322
MaeI	CTAG	2 cut(s)	687, 875
MaeII	ACGT	2 cut(s)	299, 550
MaeIII	GTNAC	2 cut(s)	320, 423
MalI	GATC	4 cut(s)	237, 484, 691, 1006
MboI	GATC	4 cut(s)	235, 482, 689, 1004
MflI	RGATCY	2 cut(s)	482, 689
MhlI	GDGCHC	1 cut(s)	582
MluCI	AATT	3 cut(s)	106, 475, 492
MlyI	GAGTC	4 cut(s)	65, 95, 368, 623
MroI	TCCGGA	1 cut(s)	19
MroXI	GAANNNNTTC	1 cut(s)	818
MseI	TTAA	3 cut(s)	105, 294, 719
MspA1I	CMGCKG	1 cut(s)	829
MspI	CCGG	1 cut(s)	20
MspR9I	CCNGG	1 cut(s)	757
MvaI	CCWGG	1 cut(s)	757
MwoI	GCNNNNNNNGC	2 cut(s)	577, 708
NdeI	CATATG	1 cut(s)	844
NdeII	GATC	4 cut(s)	235, 482, 689, 1004
NlaIII	CATG	1 cut(s)	814
NlaIV	GGNNCC	3 cut(s)	45, 198, 727
NmeAIII	GCCGAG	1 cut(s)	157
NmuCI	GTSAC	1 cut(s)	423
NsbI	TGCGCA	1 cut(s)	32
PagI	TCATGA	1 cut(s)	810
PdmI	GAANNNNTTC	1 cut(s)	818
PfeI	GAWTC	7 cut(s)	80, 161, 206, 230, 281, 683, 893
PfoI	TCCNGGA	1 cut(s)	755
PkrI	GCNGC	2 cut(s)	30, 337
PleI	GAGTC	4 cut(s)	64, 94, 367, 623
PmaCI	CACGTG	1 cut(s)	551
PmlI	CACGTG	1 cut(s)	551
PpsI	GAGTC	4 cut(s)	64, 94, 367, 623
Ppu21I	YACGTR	1 cut(s)	551
PpuMI	RGGWCCY	1 cut(s)	43
Psp5II	RGGWCCY	1 cut(s)	43
Psp6I	CCWGG	1 cut(s)	755
PspCI	CACGTG	1 cut(s)	551
PspGI	CCWGG	1 cut(s)	755
PspN4I	GGNNCC	3 cut(s)	45, 198, 727
PspPI	GGNCC	2 cut(s)	43, 782
PspPPI	RGGWCCY	1 cut(s)	43
PstI	CTGCAG	1 cut(s)	1039
PstNI	CAGNNNCTG	2 cut(s)	83, 233
PsuI	RGATCY	2 cut(s)	482, 689
PvuII	CAGCTG	1 cut(s)	829
RsaI	GTAC	2 cut(s)	63, 601
RsaNI	GTAC	2 cut(s)	62, 600
SaqAI	TTAA	3 cut(s)	105, 294, 719
SatI	GCNGC	2 cut(s)	29, 336
Sau3AI	GATC	4 cut(s)	235, 482, 689, 1004
Sau96I	GGNCC	2 cut(s)	43, 782
SbfI	CCTGCAGG	1 cut(s)	1039
ScaI	AGTACT	1 cut(s)	63
SchI	GAGTC	4 cut(s)	65, 95, 368, 623
ScrFI	CCNGG	1 cut(s)	757
SdaI	CCTGCAGG	1 cut(s)	1039
SduI	GDGCHC	1 cut(s)	582
SfaNI	GCATC	1 cut(s)	322
SfcI	CTRYAG	2 cut(s)	660, 1035
SinI	GGWCC	2 cut(s)	43, 782
SmlI	CTYRAG	1 cut(s)	1080
SmoI	CTYRAG	1 cut(s)	1080
Sse8387I	CCTGCAGG	1 cut(s)	1039
Sse9I	AATT	3 cut(s)	106, 475, 492
SspMI	CTAG	2 cut(s)	687, 875
StyD4I	CCNGG	1 cut(s)	755
TaaI	ACNGT	5 cut(s)	66, 124, 248, 326, 786
TaiI	ACGT	2 cut(s)	302, 553
TaqI	TCGA	2 cut(s)	164, 1007
TasI	AATT	3 cut(s)	106, 475, 492
TatI	WGTACW	1 cut(s)	61
TfiI	GAWTC	7 cut(s)	80, 161, 206, 230, 281, 683, 893
Tru1I	TTAA	3 cut(s)	105, 294, 719
Tru9I	TTAA	3 cut(s)	105, 294, 719
TscAI	CASTG	2 cut(s)	129, 331
TseFI	GTSAC	1 cut(s)	423
TseI	GCWGC	2 cut(s)	28, 335
Tsp45I	GTSAC	1 cut(s)	423
TspDTI	ATGAA	7 cut(s)	81, 182, 200, 488, 811, 827, 861
TspRI	CASTG	2 cut(s)	129, 331
VpaK11BI	GGWCC	2 cut(s)	43, 782
XagI	CCTNNNNNAGG	1 cut(s)	1038
XapI	RAATTY	1 cut(s)	492
XbaI	TCTAGA	1 cut(s)	686
XmnI	GAANNNNTTC	1 cut(s)	818
XspI	CTAG	2 cut(s)	687, 875
ZrmI	AGTACT	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.