Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0003451

Physical Location & Seq

Genomic Coordinates Forward (+)

67840214 .. 67843537

Gene Structure 3324 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G040640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGAGCAGGGAGGGGTCTCCGGATTGGCTGCGCACTTTTCAGGTCCCAAAAACTGAGTCATTACTGTCATTGTCCTCAGATTCTGAGTCTTCATTGAATGGACTTAATTCGGGGGAGGATAACAGTGATGGCCGAGAACTATCTCCTCATAAATCATCTGGATTCGATGAAGATGATGATAATGAAGTTATCGGTAAATTTCTTGGGAAAAGTGTTGCAGGGTCTCCATCTGATAAGAGATTGAAAGGCAAAAAGAAGAAGTCAGACGGATCCAAGAAGAGAGAAGGTAAAACAAGGACCGTTGTTGAGAAGCCTTCAAAGACTCATGAACCGAATGATTCAGTTTTGGCGTTGTCATCAGATTCTGATCCTGAAAACAGTCCTCCCAGAGAGGATGGTATCCACGATGGAGAATCTTCTGACCTTAAAACGTCTCAACTGCAATCAATAGGTAACAGTGAGGATGCAGCTCTTATGGGCAGTAGTGAAGAGTCTCCATCTAAACAGGCTACAAAAGGAAAATCTTTGAAGAAAAGTCCAAAAGGAAAAGGCCAGTCACCCAAGAAAGAGAAGAAAAAGATAGATAGCAAAGAAAAAGAAGGAATTTGTGGCGATGTGGAAGTGGCAGAGAAAGAAGCTTCTGACAAGCAGATTGAACCACGTGTATCCACCACAACATTGCCGTTGGTGCTCTCTGAGAAAGTCCATCGTACAAAGGCACTTGTTGAGTGTGAAAAGGACTCCATAGATTTGAGTGGTGATATGGGTGCTGTAGGACGGGTAGTAGTTTCAGATTCTAGATCTGGGCATAGCGAGATGTGCTTAGATTTAAAAGGAACCATTTACAAAACAACCATAGTTCCTTCCAGGACATTTTGTGTTGTTAGCTTTGGACCGTCCGAGGCAAAGATAGAAGCTATCATGAATGACTTCATTCAGCTGAAACCAGAAACATATGAAGCTGAAACAATGGTTGAAGGAACACTAGAGGGTTTCTTATTTGATTCCGAAGATGAGGCTGACAAAGTTCCTAAAGCAACTCCTCATCAAACTGATAAAAATGAGGATACTGAAGAACAAACCAATGGGACAACCAAAGGGAAAGCTGACAAAGCATCGAGGGTTGTAAAGAAGAGAGATAAGCCTGCAGGAGGGAAGCCACAGCCACCAAAGAAAGCAAGAAAGAAAACTCAACTTTCCAAGAAGCCCAAGAACAAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008544 GO:0009058 GO:0009059 GO:0009330 GO:0009653 GO:0009888 GO:0009913 GO:0009987 GO:0010026 GO:0010090 GO:0016043 GO:0022402 GO:0022622 GO:0030154 GO:0030307 GO:0030855 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034641 GO:0034645 GO:0040008 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045927 GO:0046483 GO:0048364 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051128 GO:0051276 GO:0060429 GO:0065007 GO:0071704 GO:0071840 GO:0090304 GO:0090558 GO:0090626 GO:0097159 GO:0099402 GO:1901360 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

407

Amino Acids

44.16

Weight (kDa)

7.59

Isoelectric Point (pI)

49.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630
fragaria_vesca	FvH4_7g33320 FvH4_7g33320
malus_domestica	MD01G1231400.v1.1 MD07G1303400.v1.1
prunus_persica	Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1
pyrus_communis	pycom01g23940 pycom07g27630
rosa_chinensis	RchiOBHm_Chr1g0383301
rosa_laevigata	RLG00000026115
rosa_multiflora	Rmu_sc0007173.1_g000019 Rmu_sc0014196.1_g000003
rosa_roxburghii	Rroxscaffold_4G00277420
rosa_rugosa	Rorug01G0440400 Rorug01G0440400
rosa_samantha	Rh1AG466000 Rh1BG423400 Rh1CG436600 Rh1DG456100
rosa_wichuraiana	Rw1G040640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	32
AccIII	TCCGGA	1 cut(s)	19
AclWI	GGATC	3 cut(s)	264, 277, 362
AcoI	YGGCCR	1 cut(s)	130
AcsI	RAATTY	2 cut(s)	197, 603
AcuI	CTGAAG	1 cut(s)	1092
AcvI	CACGTG	1 cut(s)	662
AfaI	GTAC	1 cut(s)	712
AfiI	CCNNNNNNNGG	1 cut(s)	1151
AflIII	ACRYGT	1 cut(s)	661
AgsI	TTSAA	6 cut(s)	97, 244, 318, 529, 656, 977
AjnI	CCWGG	1 cut(s)	866
AluBI	AGCT	7 cut(s)	470, 638, 888, 917, 940, 962, 1106
AluI	AGCT	7 cut(s)	470, 638, 888, 917, 940, 962, 1106
Alw21I	GWGCWC	1 cut(s)	693
Alw26I	GTCTC	4 cut(s)	21, 228, 438, 498
AlwI	GGATC	3 cut(s)	264, 277, 362
AlwNI	CAGNNNCTG	2 cut(s)	83, 365
Aor13HI	TCCGGA	1 cut(s)	19
AoxI	GGCC	2 cut(s)	130, 550
ApeKI	GCWGC	2 cut(s)	28, 467
ApoI	RAATTY	2 cut(s)	197, 603
ArsI	GACNNNNNNTTYG	2 cut(s)	41, 73
Asp700I	GAANNNNTTC	1 cut(s)	929
AspLEI	GCGC	1 cut(s)	33
AspS9I	GGNCC	3 cut(s)	43, 297, 893
AsuHPI	GGTGA	2 cut(s)	549, 770
AvaII	GGWCC	3 cut(s)	43, 297, 893
BamHI	GGATCC	1 cut(s)	269
BbrPI	CACGTG	1 cut(s)	662
BbsI	GAAGAC	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	693
BbvI	GCAGC	2 cut(s)	15, 479
BccI	CCATC	6 cut(s)	122, 235, 389, 401, 505, 714
BceAI	ACGGC	1 cut(s)	667
BciT130I	CCWGG	1 cut(s)	868
BciVI	GTATCC	3 cut(s)	410, 676, 1060
BcoDI	GTCTC	4 cut(s)	21, 228, 438, 498
BfaI	CTAG	2 cut(s)	798, 986
BfmI	CTRYAG	2 cut(s)	771, 1146
BfuI	GTATCC	3 cut(s)	410, 676, 1060
BglII	AGATCT	1 cut(s)	800
BisI	GCNGC	2 cut(s)	29, 468
BlsI	GCNGC	2 cut(s)	30, 469
Bme1390I	CCNGG	1 cut(s)	868
Bme18I	GGWCC	3 cut(s)	43, 297, 893
BmgT120I	GGNCC	3 cut(s)	43, 297, 893
BmiI	GGNNCC	3 cut(s)	45, 271, 838
BmrFI	CCNGG	1 cut(s)	868
BmsI	GCATC	2 cut(s)	454, 1124
BpiI	GAAGAC	1 cut(s)	81
BsaAI	YACGTR	1 cut(s)	662
BsaBI	GATNNNNATC	1 cut(s)	366
BsaI	GGTCTC	2 cut(s)	21, 228
BsaJI	CCNNGG	1 cut(s)	900
BsaWI	WCCGGW	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	1 cut(s)	1151
Bse1I	ACTGG	1 cut(s)	553
Bse3DI	GCAATG	1 cut(s)	677
Bse8I	GATNNNNATC	1 cut(s)	366
BseAI	TCCGGA	1 cut(s)	19
BseBI	CCWGG	1 cut(s)	868
BseDI	CCNNGG	1 cut(s)	900
BseGI	GGATG	2 cut(s)	400, 469
BseJI	GATNNNNATC	1 cut(s)	366
BseLI	CCNNNNNNNGG	1 cut(s)	1151
BseMI	GCAATG	1 cut(s)	677
BseMII	CTCAG	4 cut(s)	45, 75, 90, 687
BseNI	ACTGG	1 cut(s)	553
BseRI	GAGGAG	2 cut(s)	135, 1032
BseXI	GCAGC	2 cut(s)	15, 479
BshFI	GGCC	2 cut(s)	132, 552
BsiHKAI	GWGCWC	1 cut(s)	693
BsiSI	CCGG	1 cut(s)	20
BslFI	GGGAC	2 cut(s)	29, 1102
BslI	CCNNNNNNNGG	1 cut(s)	1151
BsmAI	GTCTC	4 cut(s)	21, 228, 438, 498
BsmBI	CGTCTC	1 cut(s)	438
BsmFI	GGGAC	2 cut(s)	29, 1102
BsnI	GGCC	2 cut(s)	132, 552
Bso31I	GGTCTC	2 cut(s)	21, 228
Bsp1286I	GDGCHC	1 cut(s)	693
Bsp13I	TCCGGA	1 cut(s)	19
Bsp143I	GATC	3 cut(s)	269, 367, 800
BspANI	GGCC	2 cut(s)	132, 552
BspCNI	CTCAG	4 cut(s)	46, 76, 89, 688
BspEI	TCCGGA	1 cut(s)	19
BspHI	TCATGA	2 cut(s)	325, 921
BspLI	GGNNCC	3 cut(s)	45, 271, 838
BspMAI	CTGCAG	1 cut(s)	1150
BspPI	GGATC	3 cut(s)	264, 277, 362
BspTNI	GGTCTC	2 cut(s)	21, 228
BsrDI	GCAATG	1 cut(s)	677
BsrI	ACTGG	1 cut(s)	553
BssECI	CCNNGG	1 cut(s)	900
BssMI	GATC	3 cut(s)	269, 367, 800
Bst2UI	CCWGG	1 cut(s)	868
Bst4CI	ACNGT	6 cut(s)	66, 125, 301, 380, 458, 897
Bst6I	CTCTTC	3 cut(s)	272, 483, 1127
BstBAI	YACGTR	1 cut(s)	662
BstC8I	GCNNGC	1 cut(s)	1146
BstDEI	CTNAG	5 cut(s)	54, 76, 84, 696, 823
BstENI	CCTNNNNNAGG	1 cut(s)	1149
BstF5I	GGATG	2 cut(s)	400, 469
BstHHI	GCGC	1 cut(s)	33
BstKTI	GATC	3 cut(s)	272, 370, 803
BstMAI	GTCTC	4 cut(s)	21, 228, 438, 498
BstMBI	GATC	3 cut(s)	269, 367, 800
BstMWI	GCNNNNNNNGC	3 cut(s)	688, 819, 1112
BstNI	CCWGG	1 cut(s)	868
BstSCI	CCNGG	1 cut(s)	866
BstSFI	CTRYAG	2 cut(s)	771, 1146
BstV1I	GCAGC	2 cut(s)	15, 479
BstV2I	GAAGAC	1 cut(s)	81
BstX2I	RGATCY	2 cut(s)	269, 800
BstYI	RGATCY	2 cut(s)	269, 800
BsuI	GTATCC	3 cut(s)	410, 676, 1060
BsuRI	GGCC	2 cut(s)	132, 552
BtgZI	GCGATG	1 cut(s)	627
BtsCI	GGATG	2 cut(s)	400, 469
BtsIMutI	CAGTG	2 cut(s)	130, 463
Cac8I	GCNNGC	1 cut(s)	1146
CaiI	CAGNNNCTG	2 cut(s)	83, 365
CciI	TCATGA	2 cut(s)	325, 921
CfoI	GCGC	1 cut(s)	33
Cfr13I	GGNCC	3 cut(s)	43, 297, 893
Csp6I	GTAC	1 cut(s)	711
CviAII	CATG	2 cut(s)	326, 922
CviQI	GTAC	1 cut(s)	711
DdeI	CTNAG	5 cut(s)	54, 76, 84, 696, 823
DpnI	GATC	3 cut(s)	271, 369, 802
DpnII	GATC	3 cut(s)	269, 367, 800
DraI	TTTAAA	1 cut(s)	831
EaeI	YGGCCR	1 cut(s)	130
Eam1104I	CTCTTC	3 cut(s)	272, 483, 1127
EarI	CTCTTC	3 cut(s)	272, 483, 1127
Eco31I	GGTCTC	2 cut(s)	21, 228
Eco47I	GGWCC	3 cut(s)	43, 297, 893
Eco57I	CTGAAG	1 cut(s)	1092
Eco72I	CACGTG	1 cut(s)	662
EcoNI	CCTNNNNNAGG	1 cut(s)	1149
EcoO109I	RGGNCCY	1 cut(s)	43
EcoRII	CCWGG	1 cut(s)	866
Esp3I	CGTCTC	1 cut(s)	438
FaeI	CATG	2 cut(s)	329, 925
FaqI	GGGAC	2 cut(s)	29, 1102
FatI	CATG	2 cut(s)	325, 921
FauNDI	CATATG	1 cut(s)	955
Fnu4HI	GCNGC	2 cut(s)	29, 468
FokI	GGATG	2 cut(s)	407, 476
Fsp4HI	GCNGC	2 cut(s)	29, 468
FspBI	CTAG	2 cut(s)	798, 986
FspI	TGCGCA	1 cut(s)	32
GlaI	GCGC	1 cut(s)	32
GluI	GCNGC	2 cut(s)	29, 468
HaeIII	GGCC	2 cut(s)	132, 552
HapII	CCGG	1 cut(s)	20
HhaI	GCGC	1 cut(s)	33
Hin1II	CATG	2 cut(s)	329, 925
Hin6I	GCGC	1 cut(s)	31
HinP1I	GCGC	1 cut(s)	31
HindIII	AAGCTT	1 cut(s)	636
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	2 cut(s)	549, 770
Hpy188III	TCNNGA	6 cut(s)	20, 159, 326, 371, 798, 922
HpyAV	CCTTC	5 cut(s)	278, 324, 593, 873, 971
HpyCH4III	ACNGT	6 cut(s)	66, 125, 301, 380, 458, 897
HpyCH4IV	ACGT	2 cut(s)	431, 661
HpyCH4V	TGCA	4 cut(s)	218, 442, 467, 1148
HpyF10VI	GCNNNNNNNGC	3 cut(s)	688, 819, 1112
HpyF3I	CTNAG	5 cut(s)	54, 76, 84, 696, 823
HpySE526I	ACGT	2 cut(s)	431, 661
Hsp92II	CATG	2 cut(s)	329, 925
HspAI	GCGC	1 cut(s)	31
Kpn2I	TCCGGA	1 cut(s)	19
Kzo9I	GATC	3 cut(s)	269, 367, 800
Lsp1109I	GCAGC	2 cut(s)	15, 479
LweI	GCATC	2 cut(s)	454, 1124
MaeI	CTAG	2 cut(s)	798, 986
MaeII	ACGT	2 cut(s)	431, 661
MaeIII	GTNAC	2 cut(s)	452, 555
MalI	GATC	3 cut(s)	271, 369, 802
MboI	GATC	3 cut(s)	269, 367, 800
MflI	RGATCY	2 cut(s)	269, 800
MhlI	GDGCHC	1 cut(s)	693
MluCI	AATT	3 cut(s)	106, 197, 603
MlyI	GAGTC	5 cut(s)	65, 95, 316, 500, 734
MroI	TCCGGA	1 cut(s)	19
MroXI	GAANNNNTTC	1 cut(s)	929
MseI	TTAA	3 cut(s)	105, 426, 830
MspA1I	CMGCKG	1 cut(s)	940
MspI	CCGG	1 cut(s)	20
MspR9I	CCNGG	1 cut(s)	868
MvaI	CCWGG	1 cut(s)	868
MwoI	GCNNNNNNNGC	3 cut(s)	688, 819, 1112
NdeI	CATATG	1 cut(s)	955
NdeII	GATC	3 cut(s)	269, 367, 800
NlaIII	CATG	2 cut(s)	329, 925
NlaIV	GGNNCC	3 cut(s)	45, 271, 838
NmeAIII	GCCGAG	1 cut(s)	158
NmuCI	GTSAC	1 cut(s)	555
NsbI	TGCGCA	1 cut(s)	32
PagI	TCATGA	2 cut(s)	325, 921
PdmI	GAANNNNTTC	1 cut(s)	929
PfeI	GAWTC	7 cut(s)	80, 162, 338, 362, 413, 794, 1004
PfoI	TCCNGGA	1 cut(s)	866
PkrI	GCNGC	2 cut(s)	30, 469
PleI	GAGTC	5 cut(s)	64, 94, 316, 499, 734
PmaCI	CACGTG	1 cut(s)	662
PmlI	CACGTG	1 cut(s)	662
PpsI	GAGTC	5 cut(s)	64, 94, 316, 499, 734
Ppu21I	YACGTR	1 cut(s)	662
PpuMI	RGGWCCY	1 cut(s)	43
Psp5II	RGGWCCY	1 cut(s)	43
Psp6I	CCWGG	1 cut(s)	866
PspCI	CACGTG	1 cut(s)	662
PspGI	CCWGG	1 cut(s)	866
PspN4I	GGNNCC	3 cut(s)	45, 271, 838
PspPI	GGNCC	3 cut(s)	43, 297, 893
PspPPI	RGGWCCY	1 cut(s)	43
PstI	CTGCAG	1 cut(s)	1150
PstNI	CAGNNNCTG	2 cut(s)	83, 365
PsuI	RGATCY	2 cut(s)	269, 800
PvuII	CAGCTG	1 cut(s)	940
RsaI	GTAC	1 cut(s)	712
RsaNI	GTAC	1 cut(s)	711
SaqAI	TTAA	3 cut(s)	105, 426, 830
SatI	GCNGC	2 cut(s)	29, 468
Sau3AI	GATC	3 cut(s)	269, 367, 800
Sau96I	GGNCC	3 cut(s)	43, 297, 893
SbfI	CCTGCAGG	1 cut(s)	1150
SchI	GAGTC	5 cut(s)	65, 95, 316, 500, 734
ScrFI	CCNGG	1 cut(s)	868
SdaI	CCTGCAGG	1 cut(s)	1150
SduI	GDGCHC	1 cut(s)	693
SfaNI	GCATC	2 cut(s)	454, 1124
SfcI	CTRYAG	2 cut(s)	771, 1146
SinI	GGWCC	3 cut(s)	43, 297, 893
Sse8387I	CCTGCAGG	1 cut(s)	1150
Sse9I	AATT	3 cut(s)	106, 197, 603
SspMI	CTAG	2 cut(s)	798, 986
StyD4I	CCNGG	1 cut(s)	866
TaaI	ACNGT	6 cut(s)	66, 125, 301, 380, 458, 897
TaiI	ACGT	2 cut(s)	434, 664
TaqI	TCGA	2 cut(s)	165, 1118
TasI	AATT	3 cut(s)	106, 197, 603
TfiI	GAWTC	7 cut(s)	80, 162, 338, 362, 413, 794, 1004
Tru1I	TTAA	3 cut(s)	105, 426, 830
Tru9I	TTAA	3 cut(s)	105, 426, 830
TscAI	CASTG	2 cut(s)	130, 463
TseFI	GTSAC	1 cut(s)	555
TseI	GCWGC	2 cut(s)	28, 467
Tsp45I	GTSAC	1 cut(s)	555
TspDTI	ATGAA	7 cut(s)	81, 183, 198, 342, 922, 938, 972
TspGWI	ACGGA	1 cut(s)	282
TspRI	CASTG	2 cut(s)	130, 463
VpaK11BI	GGWCC	3 cut(s)	43, 297, 893
XagI	CCTNNNNNAGG	1 cut(s)	1149
XapI	RAATTY	2 cut(s)	197, 603
XbaI	TCTAGA	1 cut(s)	797
XmnI	GAANNNNTTC	1 cut(s)	929
XspI	CTAG	2 cut(s)	798, 986

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.