DNA-binding protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 AT5G24630 |
| fragaria_vesca | FvH4_7g33320 FvH4_7g33320 |
| malus_domestica | MD01G1231400.v1.1 MD07G1303400.v1.1 |
| prunus_persica | Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 Prupe.2G322100_v2.0.a1 |
| pyrus_communis | pycom01g23940 pycom07g27630 |
| rosa_chinensis | RchiOBHm_Chr1g0383301 |
| rosa_laevigata | RLG00000026115 |
| rosa_multiflora | Rmu_sc0007173.1_g000019 Rmu_sc0014196.1_g000003 |
| rosa_roxburghii | Rroxscaffold_4G00277420 |
| rosa_rugosa | Rorug01G0440400 Rorug01G0440400 |
| rosa_samantha | Rh1AG466000 Rh1BG423400 Rh1CG436600 Rh1DG456100 |
| rosa_wichuraiana | Rw1G040640 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 24 |
| Acc16I | TGCGCA | 1 cut(s) | 308 |
| AccIII | TCCGGA | 1 cut(s) | 295 |
| AciI | CCGC | 1 cut(s) | 74 |
| AclWI | GGATC | 4 cut(s) | 65, 585, 598, 683 |
| AcoI | YGGCCR | 1 cut(s) | 406 |
| AcsI | RAATTY | 3 cut(s) | 155, 473, 924 |
| AcuI | CTGAAG | 1 cut(s) | 1413 |
| AcvI | CACGTG | 1 cut(s) | 983 |
| AfaI | GTAC | 2 cut(s) | 339, 1033 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 14, 109, 539, 1472 |
| AflIII | ACRYGT | 1 cut(s) | 982 |
| AgsI | TTSAA | 8 cut(s) | 141, 266, 373, 520, 639, 850, 977, 1298 |
| AjnI | CCWGG | 2 cut(s) | 91, 1187 |
| Alw21I | GWGCWC | 2 cut(s) | 102, 1014 |
| Alw26I | GTCTC | 6 cut(s) | 193, 297, 504, 534, 759, 819 |
| AlwI | GGATC | 4 cut(s) | 65, 585, 598, 683 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 359, 686 |
| Aor13HI | TCCGGA | 1 cut(s) | 295 |
| AoxI | GGCC | 3 cut(s) | 88, 406, 871 |
| ApeKI | GCWGC | 2 cut(s) | 304, 788 |
| ApoI | RAATTY | 3 cut(s) | 155, 473, 924 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 317, 349 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1250 |
| AspLEI | GCGC | 1 cut(s) | 309 |
| AspS9I | GGNCC | 3 cut(s) | 89, 319, 618 |
| AsuHPI | GGTGA | 2 cut(s) | 870, 1091 |
| AvaII | GGWCC | 2 cut(s) | 319, 618 |
| BamHI | GGATCC | 1 cut(s) | 590 |
| BanII | GRGCYC | 1 cut(s) | 102 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 546, 578 |
| BbrPI | CACGTG | 1 cut(s) | 983 |
| BbsI | GAAGAC | 1 cut(s) | 357 |
| Bbv12I | GWGCWC | 2 cut(s) | 102, 1014 |
| BbvI | GCAGC | 2 cut(s) | 291, 800 |
| BccI | CCATC | 8 cut(s) | 38, 80, 398, 511, 710, 722, 826, 1035 |
| BceAI | ACGGC | 2 cut(s) | 95, 988 |
| BciT130I | CCWGG | 2 cut(s) | 93, 1189 |
| BciVI | GTATCC | 3 cut(s) | 731, 997, 1381 |
| BcoDI | GTCTC | 6 cut(s) | 193, 297, 504, 534, 759, 819 |
| BfaI | CTAG | 4 cut(s) | 50, 83, 1119, 1307 |
| BfmI | CTRYAG | 2 cut(s) | 1092, 1467 |
| BfuI | GTATCC | 3 cut(s) | 731, 997, 1381 |
| BglII | AGATCT | 1 cut(s) | 1121 |
| BisI | GCNGC | 2 cut(s) | 305, 789 |
| BlsI | GCNGC | 2 cut(s) | 306, 790 |
| BmcAI | AGTACT | 1 cut(s) | 339 |
| Bme1390I | CCNGG | 2 cut(s) | 93, 1189 |
| Bme18I | GGWCC | 2 cut(s) | 319, 618 |
| BmgT120I | GGNCC | 3 cut(s) | 89, 319, 618 |
| BmiI | GGNNCC | 4 cut(s) | 6, 321, 592, 1159 |
| BmrFI | CCNGG | 2 cut(s) | 93, 1189 |
| BmrI | ACTGGG | 1 cut(s) | 127 |
| BmsI | GCATC | 3 cut(s) | 181, 775, 1445 |
| BmuI | ACTGGG | 1 cut(s) | 127 |
| BpiI | GAAGAC | 1 cut(s) | 357 |
| Bpu10I | CCTNAGC | 1 cut(s) | 161 |
| BsaAI | YACGTR | 1 cut(s) | 983 |
| BsaBI | GATNNNNATC | 1 cut(s) | 687 |
| BsaI | GGTCTC | 2 cut(s) | 297, 504 |
| BsaJI | CCNNGG | 1 cut(s) | 91 |
| BsaWI | WCCGGW | 2 cut(s) | 204, 295 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 14, 109, 539, 1472 |
| Bse1I | ACTGG | 2 cut(s) | 122, 874 |
| Bse3DI | GCAATG | 1 cut(s) | 998 |
| Bse8I | GATNNNNATC | 1 cut(s) | 687 |
| BseAI | TCCGGA | 1 cut(s) | 295 |
| BseBI | CCWGG | 2 cut(s) | 93, 1189 |
| BseDI | CCNNGG | 1 cut(s) | 91 |
| BseGI | GGATG | 3 cut(s) | 282, 721, 790 |
| BseJI | GATNNNNATC | 1 cut(s) | 687 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 14, 109, 539, 1472 |
| BseMI | GCAATG | 1 cut(s) | 998 |
| BseMII | CTCAG | 6 cut(s) | 152, 321, 351, 366, 1008, 1212 |
| BseNI | ACTGG | 2 cut(s) | 122, 874 |
| BseRI | GAGGAG | 3 cut(s) | 45, 411, 1353 |
| BseXI | GCAGC | 2 cut(s) | 291, 800 |
| BseYI | CCCAGC | 1 cut(s) | 272 |
| BshFI | GGCC | 3 cut(s) | 90, 408, 873 |
| BsiHKAI | GWGCWC | 2 cut(s) | 102, 1014 |
| BsiSI | CCGG | 2 cut(s) | 205, 296 |
| BslFI | GGGAC | 1 cut(s) | 305 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 14, 109, 539, 1472 |
| BsmAI | GTCTC | 6 cut(s) | 193, 297, 504, 534, 759, 819 |
| BsmBI | CGTCTC | 1 cut(s) | 759 |
| BsmFI | GGGAC | 1 cut(s) | 305 |
| BsnI | GGCC | 3 cut(s) | 90, 408, 873 |
| Bso31I | GGTCTC | 2 cut(s) | 297, 504 |
| Bsp1286I | GDGCHC | 2 cut(s) | 102, 1014 |
| Bsp13I | TCCGGA | 1 cut(s) | 295 |
| Bsp143I | GATC | 4 cut(s) | 70, 590, 688, 1121 |
| BspACI | CCGC | 1 cut(s) | 74 |
| BspANI | GGCC | 3 cut(s) | 90, 408, 873 |
| BspCNI | CTCAG | 6 cut(s) | 153, 322, 352, 365, 1009, 1213 |
| BspEI | TCCGGA | 1 cut(s) | 295 |
| BspHI | TCATGA | 2 cut(s) | 646, 1242 |
| BspLI | GGNNCC | 4 cut(s) | 6, 321, 592, 1159 |
| BspMAI | CTGCAG | 1 cut(s) | 1471 |
| BspPI | GGATC | 4 cut(s) | 65, 585, 598, 683 |
| BspTNI | GGTCTC | 2 cut(s) | 297, 504 |
| BsrDI | GCAATG | 1 cut(s) | 998 |
| BsrI | ACTGG | 2 cut(s) | 122, 874 |
| BssECI | CCNNGG | 1 cut(s) | 91 |
| BssMI | GATC | 4 cut(s) | 70, 590, 688, 1121 |
| Bst2UI | CCWGG | 2 cut(s) | 93, 1189 |
| Bst4CI | ACNGT | 7 cut(s) | 187, 342, 401, 622, 701, 779, 1218 |
| Bst6I | CTCTTC | 3 cut(s) | 593, 804, 1448 |
| BstBAI | YACGTR | 1 cut(s) | 983 |
| BstC8I | GCNNGC | 2 cut(s) | 98, 1467 |
| BstDEI | CTNAG | 7 cut(s) | 161, 330, 352, 360, 1017, 1144, 1221 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1470 |
| BstF5I | GGATG | 3 cut(s) | 282, 721, 790 |
| BstHHI | GCGC | 1 cut(s) | 309 |
| BstKTI | GATC | 4 cut(s) | 73, 593, 691, 1124 |
| BstMAI | GTCTC | 6 cut(s) | 193, 297, 504, 534, 759, 819 |
| BstMBI | GATC | 4 cut(s) | 70, 590, 688, 1121 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 1009, 1140, 1433 |
| BstNI | CCWGG | 2 cut(s) | 93, 1189 |
| BstSCI | CCNGG | 2 cut(s) | 91, 1187 |
| BstSFI | CTRYAG | 2 cut(s) | 1092, 1467 |
| BstV1I | GCAGC | 2 cut(s) | 291, 800 |
| BstV2I | GAAGAC | 1 cut(s) | 357 |
| BstX2I | RGATCY | 2 cut(s) | 590, 1121 |
| BstYI | RGATCY | 2 cut(s) | 590, 1121 |
| BsuI | GTATCC | 3 cut(s) | 731, 997, 1381 |
| BsuRI | GGCC | 3 cut(s) | 90, 408, 873 |
| BtgZI | GCGATG | 1 cut(s) | 948 |
| BtsCI | GGATG | 3 cut(s) | 282, 721, 790 |
| BtsIMutI | CAGTG | 2 cut(s) | 406, 784 |
| Cac8I | GCNNGC | 2 cut(s) | 98, 1467 |
| CaiI | CAGNNNCTG | 2 cut(s) | 359, 686 |
| CciI | TCATGA | 2 cut(s) | 646, 1242 |
| CfoI | GCGC | 1 cut(s) | 309 |
| Cfr13I | GGNCC | 3 cut(s) | 89, 319, 618 |
| Csp6I | GTAC | 2 cut(s) | 338, 1032 |
| CviAII | CATG | 2 cut(s) | 647, 1243 |
| CviQI | GTAC | 2 cut(s) | 338, 1032 |
| DdeI | CTNAG | 7 cut(s) | 161, 330, 352, 360, 1017, 1144, 1221 |
| DpnI | GATC | 4 cut(s) | 72, 592, 690, 1123 |
| DpnII | GATC | 4 cut(s) | 70, 590, 688, 1121 |
| DraI | TTTAAA | 1 cut(s) | 1152 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 24 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 24 |
| EaeI | YGGCCR | 1 cut(s) | 406 |
| Eam1104I | CTCTTC | 3 cut(s) | 593, 804, 1448 |
| EarI | CTCTTC | 3 cut(s) | 593, 804, 1448 |
| Ecl136II | GAGCTC | 1 cut(s) | 100 |
| Eco24I | GRGCYC | 1 cut(s) | 102 |
| Eco31I | GGTCTC | 2 cut(s) | 297, 504 |
| Eco47I | GGWCC | 2 cut(s) | 319, 618 |
| Eco53kI | GAGCTC | 1 cut(s) | 100 |
| Eco57I | CTGAAG | 1 cut(s) | 1413 |
| Eco72I | CACGTG | 1 cut(s) | 983 |
| EcoICRI | GAGCTC | 1 cut(s) | 100 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1470 |
| EcoO109I | RGGNCCY | 1 cut(s) | 319 |
| EcoRII | CCWGG | 2 cut(s) | 91, 1187 |
| EcoT38I | GRGCYC | 1 cut(s) | 102 |
| Esp3I | CGTCTC | 1 cut(s) | 759 |
| FaeI | CATG | 2 cut(s) | 650, 1246 |
| FaqI | GGGAC | 1 cut(s) | 305 |
| FatI | CATG | 2 cut(s) | 646, 1242 |
| FauNDI | CATATG | 1 cut(s) | 1276 |
| Fnu4HI | GCNGC | 2 cut(s) | 305, 789 |
| FokI | GGATG | 3 cut(s) | 289, 728, 797 |
| FriOI | GRGCYC | 1 cut(s) | 102 |
| Fsp4HI | GCNGC | 2 cut(s) | 305, 789 |
| FspBI | CTAG | 4 cut(s) | 50, 83, 1119, 1307 |
| FspI | TGCGCA | 1 cut(s) | 308 |
| GlaI | GCGC | 1 cut(s) | 308 |
| GluI | GCNGC | 2 cut(s) | 305, 789 |
| GsaI | CCCAGC | 1 cut(s) | 276 |
| HaeIII | GGCC | 3 cut(s) | 90, 408, 873 |
| HapII | CCGG | 2 cut(s) | 205, 296 |
| HhaI | GCGC | 1 cut(s) | 309 |
| Hin1II | CATG | 2 cut(s) | 650, 1246 |
| Hin6I | GCGC | 1 cut(s) | 307 |
| HinP1I | GCGC | 1 cut(s) | 307 |
| HindIII | AAGCTT | 1 cut(s) | 957 |
| HpaII | CCGG | 2 cut(s) | 205, 296 |
| HphI | GGTGA | 2 cut(s) | 870, 1091 |
| Hpy188III | TCNNGA | 8 cut(s) | 160, 190, 296, 435, 647, 692, 1119, 1243 |
| Hpy99I | CGWCG | 1 cut(s) | 15 |
| HpyAV | CCTTC | 6 cut(s) | 208, 599, 645, 914, 1194, 1292 |
| HpyCH4III | ACNGT | 7 cut(s) | 187, 342, 401, 622, 701, 779, 1218 |
| HpyCH4IV | ACGT | 2 cut(s) | 752, 982 |
| HpyCH4V | TGCA | 5 cut(s) | 183, 494, 763, 788, 1469 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 1009, 1140, 1433 |
| HpyF3I | CTNAG | 7 cut(s) | 161, 330, 352, 360, 1017, 1144, 1221 |
| HpySE526I | ACGT | 2 cut(s) | 752, 982 |
| Hsp92II | CATG | 2 cut(s) | 650, 1246 |
| HspAI | GCGC | 1 cut(s) | 307 |
| Kpn2I | TCCGGA | 1 cut(s) | 295 |
| Kzo9I | GATC | 4 cut(s) | 70, 590, 688, 1121 |
| LmnI | GCTCC | 4 cut(s) | 10, 58, 66, 105 |
| Lsp1109I | GCAGC | 2 cut(s) | 291, 800 |
| LweI | GCATC | 3 cut(s) | 181, 775, 1445 |
| MaeI | CTAG | 4 cut(s) | 50, 83, 1119, 1307 |
| MaeII | ACGT | 2 cut(s) | 752, 982 |
| MaeIII | GTNAC | 2 cut(s) | 773, 876 |
| MalI | GATC | 4 cut(s) | 72, 592, 690, 1123 |
| MboI | GATC | 4 cut(s) | 70, 590, 688, 1121 |
| MflI | RGATCY | 2 cut(s) | 590, 1121 |
| MhlI | GDGCHC | 2 cut(s) | 102, 1014 |
| MluCI | AATT | 6 cut(s) | 132, 155, 225, 382, 473, 924 |
| MlyI | GAGTC | 5 cut(s) | 341, 371, 637, 821, 1055 |
| MroI | TCCGGA | 1 cut(s) | 295 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1250 |
| MseI | TTAA | 3 cut(s) | 381, 747, 1151 |
| MspA1I | CMGCKG | 1 cut(s) | 1261 |
| MspI | CCGG | 2 cut(s) | 205, 296 |
| MspR9I | CCNGG | 2 cut(s) | 93, 1189 |
| MvaI | CCWGG | 2 cut(s) | 93, 1189 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 1009, 1140, 1433 |
| NdeI | CATATG | 1 cut(s) | 1276 |
| NdeII | GATC | 4 cut(s) | 70, 590, 688, 1121 |
| NlaIII | CATG | 2 cut(s) | 650, 1246 |
| NlaIV | GGNNCC | 4 cut(s) | 6, 321, 592, 1159 |
| NmeAIII | GCCGAG | 1 cut(s) | 434 |
| NmuCI | GTSAC | 1 cut(s) | 876 |
| NsbI | TGCGCA | 1 cut(s) | 308 |
| PagI | TCATGA | 2 cut(s) | 646, 1242 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 16, 34, 111 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1250 |
| PfeI | GAWTC | 8 cut(s) | 246, 356, 438, 659, 683, 734, 1115, 1325 |
| PfoI | TCCNGGA | 1 cut(s) | 1187 |
| PkrI | GCNGC | 2 cut(s) | 306, 790 |
| PleI | GAGTC | 5 cut(s) | 340, 370, 637, 820, 1055 |
| PmaCI | CACGTG | 1 cut(s) | 983 |
| PmlI | CACGTG | 1 cut(s) | 983 |
| PpsI | GAGTC | 5 cut(s) | 340, 370, 637, 820, 1055 |
| Ppu21I | YACGTR | 1 cut(s) | 983 |
| PpuMI | RGGWCCY | 1 cut(s) | 319 |
| Psp124BI | GAGCTC | 1 cut(s) | 102 |
| Psp5II | RGGWCCY | 1 cut(s) | 319 |
| Psp6I | CCWGG | 2 cut(s) | 91, 1187 |
| PspCI | CACGTG | 1 cut(s) | 983 |
| PspFI | CCCAGC | 1 cut(s) | 272 |
| PspGI | CCWGG | 2 cut(s) | 91, 1187 |
| PspN4I | GGNNCC | 4 cut(s) | 6, 321, 592, 1159 |
| PspPI | GGNCC | 3 cut(s) | 89, 319, 618 |
| PspPPI | RGGWCCY | 1 cut(s) | 319 |
| PstI | CTGCAG | 1 cut(s) | 1471 |
| PstNI | CAGNNNCTG | 2 cut(s) | 359, 686 |
| PsuI | RGATCY | 2 cut(s) | 590, 1121 |
| PvuII | CAGCTG | 1 cut(s) | 1261 |
| RsaI | GTAC | 2 cut(s) | 339, 1033 |
| RsaNI | GTAC | 2 cut(s) | 338, 1032 |
| SacI | GAGCTC | 1 cut(s) | 102 |
| SaqAI | TTAA | 3 cut(s) | 381, 747, 1151 |
| SatI | GCNGC | 2 cut(s) | 305, 789 |
| Sau3AI | GATC | 4 cut(s) | 70, 590, 688, 1121 |
| Sau96I | GGNCC | 3 cut(s) | 89, 319, 618 |
| SbfI | CCTGCAGG | 1 cut(s) | 1471 |
| ScaI | AGTACT | 1 cut(s) | 339 |
| SchI | GAGTC | 5 cut(s) | 341, 371, 637, 821, 1055 |
| ScrFI | CCNGG | 2 cut(s) | 93, 1189 |
| SdaI | CCTGCAGG | 1 cut(s) | 1471 |
| SduI | GDGCHC | 2 cut(s) | 102, 1014 |
| SfaNI | GCATC | 3 cut(s) | 181, 775, 1445 |
| SfcI | CTRYAG | 2 cut(s) | 1092, 1467 |
| SinI | GGWCC | 2 cut(s) | 319, 618 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 1471 |
| Sse9I | AATT | 6 cut(s) | 132, 155, 225, 382, 473, 924 |
| SsiI | CCGC | 1 cut(s) | 74 |
| SspMI | CTAG | 4 cut(s) | 50, 83, 1119, 1307 |
| SstI | GAGCTC | 1 cut(s) | 102 |
| StyD4I | CCNGG | 2 cut(s) | 91, 1187 |
| TaaI | ACNGT | 7 cut(s) | 187, 342, 401, 622, 701, 779, 1218 |
| TaiI | ACGT | 2 cut(s) | 755, 985 |
| TaqI | TCGA | 4 cut(s) | 37, 191, 441, 1439 |
| TasI | AATT | 6 cut(s) | 132, 155, 225, 382, 473, 924 |
| TatI | WGTACW | 1 cut(s) | 337 |
| TfiI | GAWTC | 8 cut(s) | 246, 356, 438, 659, 683, 734, 1115, 1325 |
| Tru1I | TTAA | 3 cut(s) | 381, 747, 1151 |
| Tru9I | TTAA | 3 cut(s) | 381, 747, 1151 |
| TscAI | CASTG | 2 cut(s) | 406, 784 |
| TseFI | GTSAC | 1 cut(s) | 876 |
| TseI | GCWGC | 2 cut(s) | 304, 788 |
| Tsp45I | GTSAC | 1 cut(s) | 876 |
| TspDTI | ATGAA | 7 cut(s) | 357, 459, 474, 663, 1243, 1259, 1293 |
| TspGWI | ACGGA | 1 cut(s) | 603 |
| TspRI | CASTG | 2 cut(s) | 406, 784 |
| VpaK11BI | GGWCC | 2 cut(s) | 319, 618 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1470 |
| XapI | RAATTY | 3 cut(s) | 155, 473, 924 |
| XbaI | TCTAGA | 1 cut(s) | 1118 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1250 |
| XspI | CTAG | 4 cut(s) | 50, 83, 1119, 1307 |
| ZrmI | AGTACT | 1 cut(s) | 339 |