Rmu_sc0014196.1_g000003

DNA-binding protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014196.1
Physical Location & Seq
Forward (+)
8083 .. 13732
5650 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014196.1_g000003.1.cds

Sequence Viewer

Length: 1545 bp
atggctccacgacgaggacgattgggtcgggttgctcgacccgatggactagctcctctgctccgagctgatccgctacggctagatggcccaggcgagctccacgacaaggacgactgggtgggtcagtcaattctttcaaacatagccaagaaattcctgagcctttcgcatcgttcttgcacagtctcgacctctctattccggtgtgggaaggcaaaagcaattttgggttttggtcttggaatcaaagtatcgtgctttgaagtagctgggatgagcagggaggggtctccggattggctgcgcacttttcaggtcccaaaaactgagtcagtactgtcattgtcctcagattctgagtcttcattgaatggacttaattcgggggaggataacagtgatggccgagaactatctcctcataaatcatctggattcgatgaagatgatgataatgaagttatcggtaaatttattgggaaaagtgttgcagggtctccatctgataagagattgaaaggcaagtctccgaaacgaggggaaaaagtagaagaagatataccccagaaaaagaagaagtcagacggatccaagaagagagaaggtaaaacaaggaccgttgttgagaagccttcaaagactcatgaaccgaatgattcagttttggcgttgtcatcagattctgatcctgaaaacagtcctcccagagaggatggtatccacgatggagaatcttctgaccttaaaacgtctcaactgcaatcaataggtaacagtgaggatgcagctcttatgggcagtagtgaagagtctccatctaaacaggctaccaaaggaaaatctttgaagaaaagtccaaaaggaaaaggccagtcacccaagaaagagaagaaaaagatagatagcaaagaaaaagaaggaatttgtggcgatgtggaagtggcagagaaagaagcttctgacaagcagattgaaccacgtgtatccaccacaacattgccgttggtgctctctgagaaagtccatcgtacaaaggcacttgttgagtgtgaaaaggactccatagatttgagtggtgatatgggtgctgtaggacgggtagtagtttcagattctagatctgggcatagcgagatgtgcttagatttaaaaggaaccatttacaaaacaaccatagttccttccaggacattttgtgttgttagctttggacagtctgaggcaaagatagaagctatcatgaatgacttcattcagctgaaaccagaaacatatgaagctgaaacaatggttgaaggaacactagagggtttcttatttgattccgaagatgaggctgacaaagttcctaaagcaactcctcatcaaactgatagaaatgaggatactgaagaacaaaccaatggggcaaccaaagggaaagctgacaaagcatcgagggttgtaaagaagagagataagcctgcaggagggaagccacagccaccaaagaaagcaagaaagaaaactcaactttccaagaagcccaagaacaaaaaatga

Protein Analysis

514

Amino Acids

55.76

Weight (kDa)

8.82

Isoelectric Point (pI)

50.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 24
Acc16I TGCGCA 1 cut(s) 308
AccIII TCCGGA 1 cut(s) 295
AciI CCGC 1 cut(s) 74
AclWI GGATC 4 cut(s) 65, 585, 598, 683
AcoI YGGCCR 1 cut(s) 406
AcsI RAATTY 3 cut(s) 155, 473, 924
AcuI CTGAAG 1 cut(s) 1413
AcvI CACGTG 1 cut(s) 983
AfaI GTAC 2 cut(s) 339, 1033
AfiI CCNNNNNNNGG 4 cut(s) 14, 109, 539, 1472
AflIII ACRYGT 1 cut(s) 982
AgsI TTSAA 8 cut(s) 141, 266, 373, 520, 639, 850, 977, 1298
AjnI CCWGG 2 cut(s) 91, 1187
Alw21I GWGCWC 2 cut(s) 102, 1014
Alw26I GTCTC 6 cut(s) 193, 297, 504, 534, 759, 819
AlwI GGATC 4 cut(s) 65, 585, 598, 683
AlwNI CAGNNNCTG 2 cut(s) 359, 686
Aor13HI TCCGGA 1 cut(s) 295
AoxI GGCC 3 cut(s) 88, 406, 871
ApeKI GCWGC 2 cut(s) 304, 788
ApoI RAATTY 3 cut(s) 155, 473, 924
ArsI GACNNNNNNTTYG 2 cut(s) 317, 349
Asp700I GAANNNNTTC 1 cut(s) 1250
AspLEI GCGC 1 cut(s) 309
AspS9I GGNCC 3 cut(s) 89, 319, 618
AsuHPI GGTGA 2 cut(s) 870, 1091
AvaII GGWCC 2 cut(s) 319, 618
BamHI GGATCC 1 cut(s) 590
BanII GRGCYC 1 cut(s) 102
BarI GAAGNNNNNNTAC 2 cut(s) 546, 578
BbrPI CACGTG 1 cut(s) 983
BbsI GAAGAC 1 cut(s) 357
Bbv12I GWGCWC 2 cut(s) 102, 1014
BbvI GCAGC 2 cut(s) 291, 800
BccI CCATC 8 cut(s) 38, 80, 398, 511, 710, 722, 826, 1035
BceAI ACGGC 2 cut(s) 95, 988
BciT130I CCWGG 2 cut(s) 93, 1189
BciVI GTATCC 3 cut(s) 731, 997, 1381
BcoDI GTCTC 6 cut(s) 193, 297, 504, 534, 759, 819
BfaI CTAG 4 cut(s) 50, 83, 1119, 1307
BfmI CTRYAG 2 cut(s) 1092, 1467
BfuI GTATCC 3 cut(s) 731, 997, 1381
BglII AGATCT 1 cut(s) 1121
BisI GCNGC 2 cut(s) 305, 789
BlsI GCNGC 2 cut(s) 306, 790
BmcAI AGTACT 1 cut(s) 339
Bme1390I CCNGG 2 cut(s) 93, 1189
Bme18I GGWCC 2 cut(s) 319, 618
BmgT120I GGNCC 3 cut(s) 89, 319, 618
BmiI GGNNCC 4 cut(s) 6, 321, 592, 1159
BmrFI CCNGG 2 cut(s) 93, 1189
BmrI ACTGGG 1 cut(s) 127
BmsI GCATC 3 cut(s) 181, 775, 1445
BmuI ACTGGG 1 cut(s) 127
BpiI GAAGAC 1 cut(s) 357
Bpu10I CCTNAGC 1 cut(s) 161
BsaAI YACGTR 1 cut(s) 983
BsaBI GATNNNNATC 1 cut(s) 687
BsaI GGTCTC 2 cut(s) 297, 504
BsaJI CCNNGG 1 cut(s) 91
BsaWI WCCGGW 2 cut(s) 204, 295
Bsc4I CCNNNNNNNGG 4 cut(s) 14, 109, 539, 1472
Bse1I ACTGG 2 cut(s) 122, 874
Bse3DI GCAATG 1 cut(s) 998
Bse8I GATNNNNATC 1 cut(s) 687
BseAI TCCGGA 1 cut(s) 295
BseBI CCWGG 2 cut(s) 93, 1189
BseDI CCNNGG 1 cut(s) 91
BseGI GGATG 3 cut(s) 282, 721, 790
BseJI GATNNNNATC 1 cut(s) 687
BseLI CCNNNNNNNGG 4 cut(s) 14, 109, 539, 1472
BseMI GCAATG 1 cut(s) 998
BseMII CTCAG 6 cut(s) 152, 321, 351, 366, 1008, 1212
BseNI ACTGG 2 cut(s) 122, 874
BseRI GAGGAG 3 cut(s) 45, 411, 1353
BseXI GCAGC 2 cut(s) 291, 800
BseYI CCCAGC 1 cut(s) 272
BshFI GGCC 3 cut(s) 90, 408, 873
BsiHKAI GWGCWC 2 cut(s) 102, 1014
BsiSI CCGG 2 cut(s) 205, 296
BslFI GGGAC 1 cut(s) 305
BslI CCNNNNNNNGG 4 cut(s) 14, 109, 539, 1472
BsmAI GTCTC 6 cut(s) 193, 297, 504, 534, 759, 819
BsmBI CGTCTC 1 cut(s) 759
BsmFI GGGAC 1 cut(s) 305
BsnI GGCC 3 cut(s) 90, 408, 873
Bso31I GGTCTC 2 cut(s) 297, 504
Bsp1286I GDGCHC 2 cut(s) 102, 1014
Bsp13I TCCGGA 1 cut(s) 295
Bsp143I GATC 4 cut(s) 70, 590, 688, 1121
BspACI CCGC 1 cut(s) 74
BspANI GGCC 3 cut(s) 90, 408, 873
BspCNI CTCAG 6 cut(s) 153, 322, 352, 365, 1009, 1213
BspEI TCCGGA 1 cut(s) 295
BspHI TCATGA 2 cut(s) 646, 1242
BspLI GGNNCC 4 cut(s) 6, 321, 592, 1159
BspMAI CTGCAG 1 cut(s) 1471
BspPI GGATC 4 cut(s) 65, 585, 598, 683
BspTNI GGTCTC 2 cut(s) 297, 504
BsrDI GCAATG 1 cut(s) 998
BsrI ACTGG 2 cut(s) 122, 874
BssECI CCNNGG 1 cut(s) 91
BssMI GATC 4 cut(s) 70, 590, 688, 1121
Bst2UI CCWGG 2 cut(s) 93, 1189
Bst4CI ACNGT 7 cut(s) 187, 342, 401, 622, 701, 779, 1218
Bst6I CTCTTC 3 cut(s) 593, 804, 1448
BstBAI YACGTR 1 cut(s) 983
BstC8I GCNNGC 2 cut(s) 98, 1467
BstDEI CTNAG 7 cut(s) 161, 330, 352, 360, 1017, 1144, 1221
BstENI CCTNNNNNAGG 1 cut(s) 1470
BstF5I GGATG 3 cut(s) 282, 721, 790
BstHHI GCGC 1 cut(s) 309
BstKTI GATC 4 cut(s) 73, 593, 691, 1124
BstMAI GTCTC 6 cut(s) 193, 297, 504, 534, 759, 819
BstMBI GATC 4 cut(s) 70, 590, 688, 1121
BstMWI GCNNNNNNNGC 3 cut(s) 1009, 1140, 1433
BstNI CCWGG 2 cut(s) 93, 1189
BstSCI CCNGG 2 cut(s) 91, 1187
BstSFI CTRYAG 2 cut(s) 1092, 1467
BstV1I GCAGC 2 cut(s) 291, 800
BstV2I GAAGAC 1 cut(s) 357
BstX2I RGATCY 2 cut(s) 590, 1121
BstYI RGATCY 2 cut(s) 590, 1121
BsuI GTATCC 3 cut(s) 731, 997, 1381
BsuRI GGCC 3 cut(s) 90, 408, 873
BtgZI GCGATG 1 cut(s) 948
BtsCI GGATG 3 cut(s) 282, 721, 790
BtsIMutI CAGTG 2 cut(s) 406, 784
Cac8I GCNNGC 2 cut(s) 98, 1467
CaiI CAGNNNCTG 2 cut(s) 359, 686
CciI TCATGA 2 cut(s) 646, 1242
CfoI GCGC 1 cut(s) 309
Cfr13I GGNCC 3 cut(s) 89, 319, 618
Csp6I GTAC 2 cut(s) 338, 1032
CviAII CATG 2 cut(s) 647, 1243
CviQI GTAC 2 cut(s) 338, 1032
DdeI CTNAG 7 cut(s) 161, 330, 352, 360, 1017, 1144, 1221
DpnI GATC 4 cut(s) 72, 592, 690, 1123
DpnII GATC 4 cut(s) 70, 590, 688, 1121
DraI TTTAAA 1 cut(s) 1152
DrdI GACNNNNNNGTC 1 cut(s) 24
DseDI GACNNNNNNGTC 1 cut(s) 24
EaeI YGGCCR 1 cut(s) 406
Eam1104I CTCTTC 3 cut(s) 593, 804, 1448
EarI CTCTTC 3 cut(s) 593, 804, 1448
Ecl136II GAGCTC 1 cut(s) 100
Eco24I GRGCYC 1 cut(s) 102
Eco31I GGTCTC 2 cut(s) 297, 504
Eco47I GGWCC 2 cut(s) 319, 618
Eco53kI GAGCTC 1 cut(s) 100
Eco57I CTGAAG 1 cut(s) 1413
Eco72I CACGTG 1 cut(s) 983
EcoICRI GAGCTC 1 cut(s) 100
EcoNI CCTNNNNNAGG 1 cut(s) 1470
EcoO109I RGGNCCY 1 cut(s) 319
EcoRII CCWGG 2 cut(s) 91, 1187
EcoT38I GRGCYC 1 cut(s) 102
Esp3I CGTCTC 1 cut(s) 759
FaeI CATG 2 cut(s) 650, 1246
FaqI GGGAC 1 cut(s) 305
FatI CATG 2 cut(s) 646, 1242
FauNDI CATATG 1 cut(s) 1276
Fnu4HI GCNGC 2 cut(s) 305, 789
FokI GGATG 3 cut(s) 289, 728, 797
FriOI GRGCYC 1 cut(s) 102
Fsp4HI GCNGC 2 cut(s) 305, 789
FspBI CTAG 4 cut(s) 50, 83, 1119, 1307
FspI TGCGCA 1 cut(s) 308
GlaI GCGC 1 cut(s) 308
GluI GCNGC 2 cut(s) 305, 789
GsaI CCCAGC 1 cut(s) 276
HaeIII GGCC 3 cut(s) 90, 408, 873
HapII CCGG 2 cut(s) 205, 296
HhaI GCGC 1 cut(s) 309
Hin1II CATG 2 cut(s) 650, 1246
Hin6I GCGC 1 cut(s) 307
HinP1I GCGC 1 cut(s) 307
HindIII AAGCTT 1 cut(s) 957
HpaII CCGG 2 cut(s) 205, 296
HphI GGTGA 2 cut(s) 870, 1091
Hpy188III TCNNGA 8 cut(s) 160, 190, 296, 435, 647, 692, 1119, 1243
Hpy99I CGWCG 1 cut(s) 15
HpyAV CCTTC 6 cut(s) 208, 599, 645, 914, 1194, 1292
HpyCH4III ACNGT 7 cut(s) 187, 342, 401, 622, 701, 779, 1218
HpyCH4IV ACGT 2 cut(s) 752, 982
HpyCH4V TGCA 5 cut(s) 183, 494, 763, 788, 1469
HpyF10VI GCNNNNNNNGC 3 cut(s) 1009, 1140, 1433
HpyF3I CTNAG 7 cut(s) 161, 330, 352, 360, 1017, 1144, 1221
HpySE526I ACGT 2 cut(s) 752, 982
Hsp92II CATG 2 cut(s) 650, 1246
HspAI GCGC 1 cut(s) 307
Kpn2I TCCGGA 1 cut(s) 295
Kzo9I GATC 4 cut(s) 70, 590, 688, 1121
LmnI GCTCC 4 cut(s) 10, 58, 66, 105
Lsp1109I GCAGC 2 cut(s) 291, 800
LweI GCATC 3 cut(s) 181, 775, 1445
MaeI CTAG 4 cut(s) 50, 83, 1119, 1307
MaeII ACGT 2 cut(s) 752, 982
MaeIII GTNAC 2 cut(s) 773, 876
MalI GATC 4 cut(s) 72, 592, 690, 1123
MboI GATC 4 cut(s) 70, 590, 688, 1121
MflI RGATCY 2 cut(s) 590, 1121
MhlI GDGCHC 2 cut(s) 102, 1014
MluCI AATT 6 cut(s) 132, 155, 225, 382, 473, 924
MlyI GAGTC 5 cut(s) 341, 371, 637, 821, 1055
MroI TCCGGA 1 cut(s) 295
MroXI GAANNNNTTC 1 cut(s) 1250
MseI TTAA 3 cut(s) 381, 747, 1151
MspA1I CMGCKG 1 cut(s) 1261
MspI CCGG 2 cut(s) 205, 296
MspR9I CCNGG 2 cut(s) 93, 1189
MvaI CCWGG 2 cut(s) 93, 1189
MwoI GCNNNNNNNGC 3 cut(s) 1009, 1140, 1433
NdeI CATATG 1 cut(s) 1276
NdeII GATC 4 cut(s) 70, 590, 688, 1121
NlaIII CATG 2 cut(s) 650, 1246
NlaIV GGNNCC 4 cut(s) 6, 321, 592, 1159
NmeAIII GCCGAG 1 cut(s) 434
NmuCI GTSAC 1 cut(s) 876
NsbI TGCGCA 1 cut(s) 308
PagI TCATGA 2 cut(s) 646, 1242
PcsI WCGNNNNNNNCGW 3 cut(s) 16, 34, 111
PdmI GAANNNNTTC 1 cut(s) 1250
PfeI GAWTC 8 cut(s) 246, 356, 438, 659, 683, 734, 1115, 1325
PfoI TCCNGGA 1 cut(s) 1187
PkrI GCNGC 2 cut(s) 306, 790
PleI GAGTC 5 cut(s) 340, 370, 637, 820, 1055
PmaCI CACGTG 1 cut(s) 983
PmlI CACGTG 1 cut(s) 983
PpsI GAGTC 5 cut(s) 340, 370, 637, 820, 1055
Ppu21I YACGTR 1 cut(s) 983
PpuMI RGGWCCY 1 cut(s) 319
Psp124BI GAGCTC 1 cut(s) 102
Psp5II RGGWCCY 1 cut(s) 319
Psp6I CCWGG 2 cut(s) 91, 1187
PspCI CACGTG 1 cut(s) 983
PspFI CCCAGC 1 cut(s) 272
PspGI CCWGG 2 cut(s) 91, 1187
PspN4I GGNNCC 4 cut(s) 6, 321, 592, 1159
PspPI GGNCC 3 cut(s) 89, 319, 618
PspPPI RGGWCCY 1 cut(s) 319
PstI CTGCAG 1 cut(s) 1471
PstNI CAGNNNCTG 2 cut(s) 359, 686
PsuI RGATCY 2 cut(s) 590, 1121
PvuII CAGCTG 1 cut(s) 1261
RsaI GTAC 2 cut(s) 339, 1033
RsaNI GTAC 2 cut(s) 338, 1032
SacI GAGCTC 1 cut(s) 102
SaqAI TTAA 3 cut(s) 381, 747, 1151
SatI GCNGC 2 cut(s) 305, 789
Sau3AI GATC 4 cut(s) 70, 590, 688, 1121
Sau96I GGNCC 3 cut(s) 89, 319, 618
SbfI CCTGCAGG 1 cut(s) 1471
ScaI AGTACT 1 cut(s) 339
SchI GAGTC 5 cut(s) 341, 371, 637, 821, 1055
ScrFI CCNGG 2 cut(s) 93, 1189
SdaI CCTGCAGG 1 cut(s) 1471
SduI GDGCHC 2 cut(s) 102, 1014
SfaNI GCATC 3 cut(s) 181, 775, 1445
SfcI CTRYAG 2 cut(s) 1092, 1467
SinI GGWCC 2 cut(s) 319, 618
Sse8387I CCTGCAGG 1 cut(s) 1471
Sse9I AATT 6 cut(s) 132, 155, 225, 382, 473, 924
SsiI CCGC 1 cut(s) 74
SspMI CTAG 4 cut(s) 50, 83, 1119, 1307
SstI GAGCTC 1 cut(s) 102
StyD4I CCNGG 2 cut(s) 91, 1187
TaaI ACNGT 7 cut(s) 187, 342, 401, 622, 701, 779, 1218
TaiI ACGT 2 cut(s) 755, 985
TaqI TCGA 4 cut(s) 37, 191, 441, 1439
TasI AATT 6 cut(s) 132, 155, 225, 382, 473, 924
TatI WGTACW 1 cut(s) 337
TfiI GAWTC 8 cut(s) 246, 356, 438, 659, 683, 734, 1115, 1325
Tru1I TTAA 3 cut(s) 381, 747, 1151
Tru9I TTAA 3 cut(s) 381, 747, 1151
TscAI CASTG 2 cut(s) 406, 784
TseFI GTSAC 1 cut(s) 876
TseI GCWGC 2 cut(s) 304, 788
Tsp45I GTSAC 1 cut(s) 876
TspDTI ATGAA 7 cut(s) 357, 459, 474, 663, 1243, 1259, 1293
TspGWI ACGGA 1 cut(s) 603
TspRI CASTG 2 cut(s) 406, 784
VpaK11BI GGWCC 2 cut(s) 319, 618
XagI CCTNNNNNAGG 1 cut(s) 1470
XapI RAATTY 3 cut(s) 155, 473, 924
XbaI TCTAGA 1 cut(s) 1118
XmnI GAANNNNTTC 1 cut(s) 1250
XspI CTAG 4 cut(s) 50, 83, 1119, 1307
ZrmI AGTACT 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.