pycom01g23930

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0010371
Physical Location & Seq
Forward (+)
21058425 .. 21059520
1096 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g23930.2

Sequence Viewer

Length: 903 bp
ATGCCATTTACAGCGAGACCTCAAACTTTTCTTCGCTTCTTTTACATCCTCGTTCCTTTTTTCATCTCTTTATCGTACTCTGCCACATTCACTATAACAAACAACTGCCCGGAAACCATCTGGCCCGGTACATTAGCGGCTTCTGGCACCCCTCAGCTCCCAACAACGGGGTTTCGGTTGGACCCCGGCCAGAGTGTGAAACTTCCTTCTACTCCAGGATGGTCAGGGCGTATATGGGCTAGGACAGGTTGCACATTCGATGAGCTGGGAGCTGGCACGTGTCAAACTGGCGACTGCGGAGGCAGGCTGGAATGTGGTGGCAGTGGTGCCACTCCACCAGCCTCGCTATTTGAGATAACTCTTGGCAACGGAAATGGTTTAGATTTCTACGATGTCAGCATTGTAGACGGCTACAATCTGCCCCTCATTGCCGCCCCACGCGGCGTGTTTGGTGCATGTAATGCCACCGGCTGCGTTTCAGATATCAACGCAGGTTGCCCGAAAGAGCTTCAGGTGGTGGGAGGAGGAAGCGAAGGGAGCGTGATTGGATGCAAGAGCGCCTGCGAGGCATTTGGTTTGGACCAGTACTGCTGCAGCGGACAGTTTGCTAACCCGACGACATGCCAGCCTTCCAATTATTCCACCATTTTCAAAAGAGCTTGTCCAAGAGCTTACAGTTATGCTTTTGATGATGGCACAAGCACTTTTACATGCAAGGCTTTTGATTACGCCATTTTCTTCTGCCCCAACGGCGGGACTAGAAATTCAGATGATGCGTTAGCTCCTCCAAGATATGAAGTGCTTGGAAGTAGGAAGGTTGTGCAGATGGTTTATTCTTCTTCGAACAGGCTCTTACCAGTTCCGCTGCTAATCCTTCTTCTCATCGTCTACATATTATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

301

Amino Acids

31.88

Weight (kDa)

5.22

Isoelectric Point (pI)

40.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010371)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24620 AT5G24620 AT5G24620 AT5G24620
fragaria_vesca FvH4_7g33310
malus_domestica MD01G1231300.v1.1 MD07G1303300.v1.1
prunus_persica Prupe.2G322000_v2.0.a1
pyrus_communis pycom01g23930 pycom07g27620
rosa_chinensis RchiOBHm_Chr1g0383291
rosa_laevigata RLG00000026116
rosa_multiflora Rmu_sc0007173.1_g000020 Rmu_sc0014196.1_g000004
rosa_roxburghii Rroxscaffold_4G00277430
rosa_rugosa Rorug01G0440400
rosa_samantha Rh1AG465900 Rh1BG423300 Rh1CG436500 Rh1DG456000
rosa_wichuraiana Rw1G040650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 482
AccB1I GGYRCC 2 cut(s) 146, 326
AccI GTMKAC 2 cut(s) 405, 888
AccII CGCG 1 cut(s) 441
AciI CCGC 7 cut(s) 137, 297, 432, 441, 597, 753, 863
AcoI YGGCCR 1 cut(s) 187
AcsI RAATTY 1 cut(s) 763
AcuI CTGAAG 1 cut(s) 494
AcvI CACGTG 1 cut(s) 279
AfaI GTAC 3 cut(s) 77, 130, 587
AfiI CCNNNNNNNGG 4 cut(s) 166, 167, 752, 753
AflIII ACRYGT 1 cut(s) 278
AgsI TTSAA 1 cut(s) 652
AjnI CCWGG 1 cut(s) 214
AluBI AGCT 7 cut(s) 157, 265, 272, 508, 659, 671, 782
AluI AGCT 7 cut(s) 157, 265, 272, 508, 659, 671, 782
Alw26I GTCTC 1 cut(s) 10
AoxI GGCC 2 cut(s) 122, 187
ApeKI GCWGC 4 cut(s) 471, 591, 594, 865
ApoI RAATTY 1 cut(s) 763
AspLEI GCGC 1 cut(s) 560
AspS9I GGNCC 3 cut(s) 123, 181, 580
AsuC2I CCSGG 3 cut(s) 110, 126, 186
AsuII TTCGAA 1 cut(s) 842
AvaII GGWCC 2 cut(s) 181, 580
BanI GGYRCC 2 cut(s) 146, 326
BbrPI CACGTG 1 cut(s) 279
BbvCI CCTCAGC 1 cut(s) 153
BbvI GCAGC 4 cut(s) 458, 578, 606, 852
BccI CCATC 4 cut(s) 125, 213, 686, 820
BceAI ACGGC 2 cut(s) 424, 766
BciT130I CCWGG 1 cut(s) 216
BcnI CCSGG 3 cut(s) 110, 126, 186
BcoDI GTCTC 1 cut(s) 10
BfaI CTAG 2 cut(s) 240, 759
BfmI CTRYAG 1 cut(s) 592
BfoI RGCGCY 1 cut(s) 561
BfuAI ACCTGC 1 cut(s) 482
BglI GCCNNNNNGGC 2 cut(s) 566, 750
BisI GCNGC 7 cut(s) 138, 432, 442, 472, 592, 595, 866
BlsI GCNGC 7 cut(s) 139, 433, 443, 473, 593, 596, 867
BmcAI AGTACT 1 cut(s) 587
Bme1390I CCNGG 4 cut(s) 110, 126, 186, 216
Bme18I GGWCC 2 cut(s) 181, 580
BmgT120I GGNCC 3 cut(s) 123, 181, 580
BmiI GGNNCC 3 cut(s) 148, 183, 328
BmrFI CCNGG 4 cut(s) 110, 126, 186, 216
BmsI GCATC 2 cut(s) 539, 763
BpmI CTGGAG 1 cut(s) 198
Bpu10I CCTNAGC 1 cut(s) 153
Bpu14I TTCGAA 1 cut(s) 842
BpuMI CCSGG 3 cut(s) 110, 126, 186
BsaAI YACGTR 1 cut(s) 279
BsaI GGTCTC 1 cut(s) 10
BsaJI CCNNGG 1 cut(s) 184
Bsc4I CCNNNNNNNGG 4 cut(s) 166, 167, 752, 753
Bse118I RCCGGY 1 cut(s) 467
Bse1I ACTGG 3 cut(s) 292, 583, 857
Bse3DI GCAATG 1 cut(s) 426
BseBI CCWGG 1 cut(s) 216
BseDI CCNNGG 1 cut(s) 184
BseGI GGATG 3 cut(s) 45, 224, 554
BseLI CCNNNNNNNGG 4 cut(s) 166, 167, 752, 753
BseMI GCAATG 1 cut(s) 426
BseMII CTCAG 1 cut(s) 167
BseNI ACTGG 3 cut(s) 292, 583, 857
BseRI GAGGAG 2 cut(s) 537, 774
BseXI GCAGC 4 cut(s) 458, 578, 606, 852
BseYI CCCAGC 1 cut(s) 265
BsgI GTGCAG 1 cut(s) 842
Bsh1236I CGCG 1 cut(s) 441
BshFI GGCC 2 cut(s) 124, 189
BshNI GGYRCC 2 cut(s) 146, 326
BsiSI CCGG 4 cut(s) 110, 126, 186, 468
BslFI GGGAC 1 cut(s) 769
BslI CCNNNNNNNGG 4 cut(s) 166, 167, 752, 753
BsmAI GTCTC 1 cut(s) 10
BsmFI GGGAC 1 cut(s) 769
BsnI GGCC 2 cut(s) 124, 189
Bso31I GGTCTC 1 cut(s) 10
Bsp119I TTCGAA 1 cut(s) 842
BspACI CCGC 7 cut(s) 137, 297, 432, 441, 597, 753, 863
BspANI GGCC 2 cut(s) 124, 189
BspCNI CTCAG 1 cut(s) 166
BspFNI CGCG 1 cut(s) 441
BspLI GGNNCC 3 cut(s) 148, 183, 328
BspMAI CTGCAG 1 cut(s) 596
BspMI ACCTGC 1 cut(s) 482
BspT104I TTCGAA 1 cut(s) 842
BspT107I GGYRCC 2 cut(s) 146, 326
BspTNI GGTCTC 1 cut(s) 10
BsrDI GCAATG 1 cut(s) 426
BsrFI RCCGGY 1 cut(s) 467
BsrI ACTGG 3 cut(s) 292, 583, 857
BssAI RCCGGY 1 cut(s) 467
BssECI CCNNGG 1 cut(s) 184
Bst2UI CCWGG 1 cut(s) 216
Bst4CI ACNGT 2 cut(s) 603, 677
BstAPI GCANNNNNTGC 1 cut(s) 461
BstBAI YACGTR 1 cut(s) 279
BstBI TTCGAA 1 cut(s) 842
BstC8I GCNNGC 4 cut(s) 274, 305, 562, 626
BstDEI CTNAG 1 cut(s) 153
BstF5I GGATG 3 cut(s) 45, 224, 554
BstFNI CGCG 1 cut(s) 441
BstH2I RGCGCY 1 cut(s) 561
BstHHI GCGC 1 cut(s) 560
BstMAI GTCTC 1 cut(s) 10
BstMWI GCNNNNNNNGC 4 cut(s) 461, 537, 566, 750
BstNI CCWGG 1 cut(s) 216
BstNSI RCATGY 3 cut(s) 459, 624, 714
BstSCI CCNGG 4 cut(s) 108, 124, 184, 214
BstSFI CTRYAG 1 cut(s) 592
BstUI CGCG 1 cut(s) 441
BstV1I GCAGC 4 cut(s) 458, 578, 606, 852
BsuRI GGCC 2 cut(s) 124, 189
BtsCI GGATG 3 cut(s) 45, 224, 554
BtsI GCAGTG 1 cut(s) 328
BtsIMutI CAGTG 1 cut(s) 328
BveI ACCTGC 1 cut(s) 482
Cac8I GCNNGC 4 cut(s) 274, 305, 562, 626
CfoI GCGC 1 cut(s) 560
Cfr10I RCCGGY 1 cut(s) 467
Cfr13I GGNCC 3 cut(s) 123, 181, 580
Csp6I GTAC 3 cut(s) 76, 129, 586
CviAII CATG 3 cut(s) 456, 621, 711
CviQI GTAC 3 cut(s) 76, 129, 586
DdeI CTNAG 1 cut(s) 153
EaeI YGGCCR 1 cut(s) 187
Eco31I GGTCTC 1 cut(s) 10
Eco32I GATATC 1 cut(s) 484
Eco47I GGWCC 2 cut(s) 181, 580
Eco57I CTGAAG 1 cut(s) 494
Eco72I CACGTG 1 cut(s) 279
EcoRII CCWGG 1 cut(s) 214
EcoRV GATATC 1 cut(s) 484
FaeI CATG 3 cut(s) 459, 624, 714
FaiI YATR 9 cut(s) 95, 233, 235, 457, 622, 681, 712, 795, 893
FaqI GGGAC 1 cut(s) 769
FatI CATG 3 cut(s) 455, 620, 710
FauI CCCGC 1 cut(s) 746
FblI GTMKAC 2 cut(s) 405, 888
Fnu4HI GCNGC 7 cut(s) 138, 432, 442, 472, 592, 595, 866
FokI GGATG 3 cut(s) 32, 231, 561
Fsp4HI GCNGC 7 cut(s) 138, 432, 442, 472, 592, 595, 866
FspBI CTAG 2 cut(s) 240, 759
GlaI GCGC 1 cut(s) 559
GluI GCNGC 7 cut(s) 138, 432, 442, 472, 592, 595, 866
GsaI CCCAGC 1 cut(s) 269
GsuI CTGGAG 1 cut(s) 198
HaeII RGCGCY 1 cut(s) 561
HaeIII GGCC 2 cut(s) 124, 189
HapII CCGG 4 cut(s) 110, 126, 186, 468
HhaI GCGC 1 cut(s) 560
Hin1II CATG 3 cut(s) 459, 624, 714
Hin6I GCGC 1 cut(s) 558
HinP1I GCGC 1 cut(s) 558
HpaII CCGG 4 cut(s) 110, 126, 186, 468
Hpy166II GTNNAC 2 cut(s) 406, 889
Hpy188I TCNGA 2 cut(s) 481, 769
Hpy188III TCNNGA 1 cut(s) 900
Hpy8I GTNNAC 2 cut(s) 406, 889
Hpy99I CGWCG 1 cut(s) 619
HpyAV CCTTC 5 cut(s) 216, 527, 639, 808, 884
HpyCH4III ACNGT 2 cut(s) 603, 677
HpyCH4IV ACGT 1 cut(s) 278
HpyCH4V TGCA 6 cut(s) 252, 455, 552, 594, 714, 823
HpyF10VI GCNNNNNNNGC 4 cut(s) 461, 537, 566, 750
HpyF3I CTNAG 1 cut(s) 153
HpySE526I ACGT 1 cut(s) 278
Hsp92II CATG 3 cut(s) 459, 624, 714
HspAI GCGC 1 cut(s) 558
LmnI GCTCC 4 cut(s) 162, 269, 537, 787
Lsp1109I GCAGC 4 cut(s) 458, 578, 606, 852
LweI GCATC 2 cut(s) 539, 763
MaeI CTAG 2 cut(s) 240, 759
MaeII ACGT 1 cut(s) 278
MboII GAAGA 5 cut(s) 23, 730, 828, 831, 869
MluCI AATT 2 cut(s) 634, 763
MmeI TCCRAC 1 cut(s) 159
MspA1I CMGCKG 2 cut(s) 597, 865
MspI CCGG 4 cut(s) 110, 126, 186, 468
MspR9I CCNGG 4 cut(s) 110, 126, 186, 216
MvaI CCWGG 1 cut(s) 216
MvnI CGCG 1 cut(s) 441
MwoI GCNNNNNNNGC 4 cut(s) 461, 537, 566, 750
NciI CCSGG 3 cut(s) 110, 126, 186
NlaIII CATG 3 cut(s) 459, 624, 714
NlaIV GGNNCC 3 cut(s) 148, 183, 328
NspI RCATGY 3 cut(s) 459, 624, 714
NspV TTCGAA 1 cut(s) 842
PfoI TCCNGGA 1 cut(s) 214
PkrI GCNGC 7 cut(s) 139, 433, 443, 473, 593, 596, 867
PmaCI CACGTG 1 cut(s) 279
PmlI CACGTG 1 cut(s) 279
Ppu21I YACGTR 1 cut(s) 279
Psp6I CCWGG 1 cut(s) 214
PspCI CACGTG 1 cut(s) 279
PspFI CCCAGC 1 cut(s) 265
PspGI CCWGG 1 cut(s) 214
PspN4I GGNNCC 3 cut(s) 148, 183, 328
PspPI GGNCC 3 cut(s) 123, 181, 580
PstI CTGCAG 1 cut(s) 596
RsaI GTAC 3 cut(s) 77, 130, 587
RsaNI GTAC 3 cut(s) 76, 129, 586
SatI GCNGC 7 cut(s) 138, 432, 442, 472, 592, 595, 866
Sau96I GGNCC 3 cut(s) 123, 181, 580
ScaI AGTACT 1 cut(s) 587
ScrFI CCNGG 4 cut(s) 110, 126, 186, 216
SfaNI GCATC 2 cut(s) 539, 763
SfcI CTRYAG 1 cut(s) 592
SfuI TTCGAA 1 cut(s) 842
SinI GGWCC 2 cut(s) 181, 580
Sse9I AATT 2 cut(s) 634, 763
SsiI CCGC 7 cut(s) 137, 297, 432, 441, 597, 753, 863
SspMI CTAG 2 cut(s) 240, 759
StyD4I CCNGG 4 cut(s) 108, 124, 184, 214
TaaI ACNGT 2 cut(s) 603, 677
TaiI ACGT 1 cut(s) 281
TaqI TCGA 2 cut(s) 258, 842
TasI AATT 2 cut(s) 634, 763
TatI WGTACW 1 cut(s) 585
TauI GCSGC 3 cut(s) 140, 434, 444
TscAI CASTG 1 cut(s) 328
TseI GCWGC 4 cut(s) 471, 591, 594, 865
TspDTI ATGAA 2 cut(s) 52, 810
TspGWI ACGGA 1 cut(s) 384
TspRI CASTG 1 cut(s) 328
VpaK11BI GGWCC 2 cut(s) 181, 580
XapI RAATTY 1 cut(s) 763
XceI RCATGY 3 cut(s) 459, 624, 714
XmiI GTMKAC 2 cut(s) 405, 888
XspI CTAG 2 cut(s) 240, 759
ZrmI AGTACT 1 cut(s) 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.